genome.fa.s13935.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013935.1 Kokia drynarioides strain JFW-HI SEQ_128965, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  177514

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13430--13484	16	3.4	16	70	12	51	45	0	1	52	1.11
13432--13512	32	2.5	31	82	6	90	46	1	1	50	1.17
18601--18719	41	3.0	40	80	4	141	37	10	18	33	1.84
19646--19718	31	2.4	31	93	2	121	31	15	17	35	1.91
21737--21801	15	4.6	14	76	14	62	24	0	6	69	1.11
26828--26854	3	9.0	3	100	0	54	66	0	0	33	0.92
35989--36021	14	2.4	14	85	14	50	27	36	12	24	1.91
38733--38758	2	13.0	2	100	0	52	50	0	0	50	1.00
42990--43048	25	2.3	26	77	13	70	67	3	5	23	1.26
57866--57933	35	1.9	35	96	0	127	29	17	20	32	1.96
78389--78419	2	15.5	2	93	0	53	0	3	48	48	1.17
79433--79483	10	5.2	10	79	11	61	29	0	1	68	1.00
79411--79483	20	3.7	19	77	22	64	34	0	1	64	1.02
80976--81033	29	2.0	29	83	6	73	55	13	3	27	1.55
81398--81453	25	2.2	26	78	15	64	42	1	1	53	1.21
82002--82038	18	2.0	20	89	10	60	5	0	37	56	1.22
82867--82905	18	2.2	18	95	0	69	33	2	25	38	1.70
88000--88055	20	2.8	20	91	0	94	42	3	28	25	1.71
89865--89907	15	2.8	15	82	3	50	74	2	2	20	1.04
103989--104106	59	2.0	59	100	0	236	28	18	20	32	1.96
107947--108290	186	1.8	187	84	1	467	29	15	15	39	1.88
108809--108842	3	11.3	3	100	0	68	0	32	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115331--115361	14	2.2	14	100	0	62	35	12	6	45	1.68
116739--116795	25	2.2	26	87	3	80	43	8	15	31	1.78
120676--120717	18	2.2	20	88	12	63	30	0	0	69	0.89
123608--123649	19	2.2	19	86	4	57	47	0	0	52	1.00
124732--125082	172	2.0	176	83	8	439	38	0	37	23	1.61
125115--125170	19	3.1	19	92	5	89	26	10	14	48	1.76
125123--125170	9	5.2	9	80	14	62	29	10	12	47	1.74
125634--125693	19	3.2	19	92	0	93	16	21	28	33	1.95
125942--126073	66	2.0	66	100	0	264	40	9	22	27	1.84
127041--127125	30	2.7	31	83	3	100	27	10	9	52	1.66
128931--128970	21	1.9	21	94	0	71	50	5	15	30	1.65
136348--136644	147	2.0	147	97	0	558	48	11	7	32	1.66
146958--146988	16	1.9	16	93	0	53	32	0	0	67	0.91
148273--148314	22	1.9	22	90	0	66	26	9	14	50	1.73
152455--152530	32	2.4	32	79	0	80	25	2	23	48	1.64
152496--152647	62	2.4	62	84	5	198	21	3	30	45	1.67
153985--154037	23	2.3	23	100	0	106	54	18	18	7	1.67
156416--156466	18	2.8	17	80	11	57	72	3	21	1	1.11
167799--167846	21	2.2	21	85	3	60	33	18	4	43	1.69
170333--170438	10	10.9	9	69	18	54	63	0	2	33	1.16
170334--170405	19	3.8	18	75	10	56	65	1	1	31	1.10
170354--170455	10	10.0	10	69	10	64	62	1	3	31	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
170382--170455	20	3.7	20	77	12	80	63	2	4	29	1.26
170412--170467	29	1.9	29	82	7	69	57	3	5	33	1.39
170491--170547	19	2.9	20	78	5	71	64	0	8	26	1.22
170732--170889	20	8.2	19	71	12	92	35	2	1	60	1.21
170732--170824	19	4.7	19	73	10	78	33	3	3	60	1.29
170731--170824	40	2.4	37	78	15	107	34	3	3	59	1.29
170809--170876	10	6.9	10	72	9	50	42	1	0	55	1.08
170812--170868	28	1.9	31	82	10	75	43	1	0	54	1.10
170732--170889	9	16.4	9	70	17	61	35	2	1	60	1.21
170789--170891	28	3.6	28	67	19	70	35	1	0	62	1.07
176799--176875	17	4.5	17	80	6	84	41	1	5	51	1.32

Tables:   1

The End!