Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013938.1 Kokia drynarioides strain JFW-HI SEQ_128968, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2285
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.32

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:1961 original size:29 final size:29

Alignment explanation


    Indices: 1871--1963  Score: 73
    Period size: 29  Copynumber: 3.2  Consensus size: 29

       1861 ATTTTGTTTC

                                 **      
       1871 ATTTTGGTAAATAATATGATGGGGATATT
          1 ATTTTGGTAAATAATATGATGATGATATT

                 **   *          ** *       
       1900 ATTTTTATAATTAAT-T-ATTTTTTATATTAT
          1 ATTTTGGTAAATAATATGA-TGATGATA-T-T

                                         
       1930 ATTTTGGTAAATAATATGATGATGATATT
          1 ATTTTGGTAAATAATATGATGATGATATT

                 
       1959 ATTTT
          1 ATTTT

       1964 TTATATTATA


Statistics
Matches: 46,  Mismatches: 13, Indels: 10
        0.67            0.19        0.14

Matches are distributed among these distances:
  27    1  0.02
  28    5  0.11
  29   19  0.41
  30   14  0.30
  31    6  0.13
  32    1  0.02

ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53


Consensus pattern (29 bp):   
ATTTTGGTAAATAATATGATGATGATATT
Done.