genome.fa.s13946.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013946.1 Kokia drynarioides strain JFW-HI SEQ_128976, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92706

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2990--3027	19	2.1	19	90	5	60	63	0	2	34	1.09
4589--4639	25	2.0	25	96	0	93	62	7	0	29	1.23
7485--7549	24	2.7	24	86	9	96	13	18	36	30	1.90
25566--25660	43	2.2	42	94	1	163	31	5	24	38	1.77
26224--26386	59	2.7	59	83	4	186	28	20	15	34	1.94
30596--30686	25	3.6	25	88	7	130	47	2	7	42	1.44
30871--30904	6	5.5	6	89	3	50	67	0	2	29	1.05
30860--30898	18	2.2	18	90	0	60	58	2	7	30	1.39
30860--30904	12	3.7	12	87	3	54	62	2	6	28	1.33
31124--31167	19	2.3	19	84	11	54	61	0	0	38	0.96
31840--32179	173	2.0	173	98	0	653	27	24	24	23	2.00
32802--32847	20	2.2	20	84	7	56	32	2	2	63	1.19
32812--32851	20	2.0	20	100	0	80	30	5	5	60	1.40
35035--35174	58	2.4	59	86	5	187	37	10	17	35	1.83
39392--39429	14	2.6	15	87	4	60	65	13	10	10	1.47
39370--39419	20	2.5	20	80	3	66	68	14	10	8	1.40
43671--43727	21	2.8	20	78	7	60	12	15	31	40	1.85
47574--47612	18	2.1	19	86	13	55	56	2	2	38	1.27
47970--48051	30	2.7	30	86	0	119	31	13	24	30	1.93
54933--54969	18	2.1	18	89	0	56	48	0	27	24	1.51
57841--57883	18	2.4	19	81	18	56	62	0	2	34	1.08
59963--59987	13	1.9	13	100	0	50	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62542--62624	24	3.5	24	88	0	130	27	25	24	22	2.00
64679--64758	10	8.0	10	80	0	70	42	5	7	45	1.54
64682--64755	34	2.2	34	90	0	112	41	5	8	44	1.57
64679--64758	20	4.3	20	77	18	82	42	5	7	45	1.54
64679--64756	14	5.6	14	81	0	75	42	5	7	44	1.55
64723--64764	10	4.1	10	87	3	57	40	0	11	47	1.40
67929--67969	4	10.2	4	80	19	50	0	24	0	75	0.80
67929--67968	16	2.5	16	91	0	62	0	25	0	75	0.81
67929--67971	12	3.5	13	81	15	56	0	25	0	74	0.82
70473--70781	29	10.6	29	77	14	271	35	5	26	32	1.79
70473--70779	59	5.3	58	81	9	299	36	5	26	32	1.79
70503--70793	30	10.0	28	74	15	166	35	5	26	32	1.79
71883--71936	22	2.5	21	88	8	81	48	3	0	48	1.19
71886--71944	22	2.7	21	82	10	73	47	3	1	47	1.29
72755--72822	6	11.7	6	81	12	88	52	1	1	44	1.19
72755--72822	23	2.9	22	85	10	82	52	1	1	44	1.19
75870--75905	19	1.9	19	88	5	56	55	0	2	41	1.14
79908--79934	13	2.1	13	100	0	54	51	7	0	40	1.30
81613--81710	48	2.0	48	98	0	187	37	16	16	29	1.90
82020--82357	72	4.7	72	94	2	572	55	15	5	23	1.61
82020--82357	146	2.3	144	93	2	572	55	15	5	23	1.61
82744--82813	18	3.9	18	83	7	97	38	10	10	41	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83907--84088	91	2.0	91	95	0	328	39	17	12	31	1.86
84030--84073	18	2.4	19	81	14	56	50	25	4	20	1.67
88635--88751	61	1.9	61	92	0	198	30	16	25	27	1.96
90343--90372	9	3.3	9	90	0	51	30	10	13	46	1.75
92195--92252	21	2.8	21	72	15	57	36	17	18	27	1.94

Tables:   1

The End!