Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001395.1 Kokia drynarioides strain JFW-HI SEQ_112883, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 645

Length: 1076
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34


Found at i:272 original size:17 final size:17

Alignment explanation


    Indices: 250--283  Score: 50
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        240 CATGGCCTAC

                             
        250 CACACGCTCGTGTGGTT
          1 CACACGCTCGTGTGGTT

                  * *        
        267 CACACGGTTGTGTGGTT
          1 CACACGCTCGTGTGGTT

        284 TGGCCGTGTG


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.12, C:0.24, G:0.32, T:0.32


Consensus pattern (17 bp):   
CACACGCTCGTGTGGTT
Done.