Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013953.1 Kokia drynarioides strain JFW-HI SEQ_128983, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2415
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.35

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:985 original size:25 final size:27

Alignment explanation


    Indices: 953--1007  Score: 78
    Period size: 27  Copynumber: 2.1  Consensus size: 27

        943 ATTAATTTTC

                            *       *  
        953 TTTTCTTTC-ATTTTTGT-ATTTCTTT
          1 TTTTCTTTCTATTTTTATAATTTCATT

                                       
        978 TTTTCTTTCTATTTTTATAATTTCATT
          1 TTTTCTTTCTATTTTTATAATTTCATT

               
       1005 TTT
          1 TTT

       1008 CCTTCACGTT


Statistics
Matches: 26,  Mismatches: 2, Indels: 2
        0.87            0.07        0.07

Matches are distributed among these distances:
  25    9  0.35
  26    7  0.27
  27   10  0.38

ACGTcount: A:0.13, C:0.11, G:0.02, T:0.75


Consensus pattern (27 bp):   
TTTTCTTTCTATTTTTATAATTTCATT

Found at i:1006 original size:26 final size:25

Alignment explanation


    Indices: 953--1013  Score: 70
    Period size: 26  Copynumber: 2.4  Consensus size: 25

        943 ATTAATTTTC

                           *       * 
        953 TTTTCTTTCATTTTTGTATTTCTTT
          1 TTTTCTTTCATTTTTATATTTCTAT

                                       
        978 TTTTCTTTCTATTTTTATAATTTC-AT
          1 TTTTCTTTC-ATTTTTAT-ATTTCTAT

                 *    
       1004 TTTTCCTTCA
          1 TTTTCTTTCA

       1014 CGTTCCCTCC


Statistics
Matches: 31,  Mismatches: 3, Indels: 4
        0.82            0.08        0.11

Matches are distributed among these distances:
  25   10  0.32
  26   16  0.52
  27    5  0.16

ACGTcount: A:0.13, C:0.15, G:0.02, T:0.70


Consensus pattern (25 bp):   
TTTTCTTTCATTTTTATATTTCTAT
Done.