genome.fa.s13955.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013955.1 Kokia drynarioides strain JFW-HI SEQ_128985, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126830

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2767--2865	46	2.2	46	88	0	153	26	23	4	46	1.70
2767--2892	46	2.8	46	81	3	130	26	23	3	45	1.71
10393--10580	59	3.2	59	83	4	236	35	4	9	51	1.55
10393--10615	62	3.7	60	79	7	231	33	5	9	51	1.58
22430--22478	25	2.0	24	84	11	64	48	2	6	42	1.39
22900--22932	17	1.9	17	93	0	57	33	12	12	42	1.79
25987--26033	18	2.6	18	93	0	76	38	12	17	31	1.87
32915--32972	21	2.8	21	78	0	62	34	24	13	27	1.93
39591--39828	52	4.6	52	92	0	379	27	15	24	32	1.95
47898--47978	24	3.4	24	89	0	126	54	8	12	24	1.65
54457--54499	22	1.9	23	90	4	70	32	4	4	58	1.39
55343--55428	30	2.9	29	69	16	77	56	13	6	22	1.61
58158--58195	14	2.5	16	83	12	53	39	0	0	60	0.97
63084--63182	36	2.7	35	83	6	135	35	16	23	25	1.95
69683--69720	20	1.9	19	89	5	58	42	2	2	52	1.29
73455--73565	26	4.2	26	84	4	143	35	23	20	20	1.96
73474--73587	52	2.2	52	80	10	126	35	23	21	19	1.96
73579--73737	28	5.6	28	87	0	201	35	22	12	28	1.91
73577--73737	56	2.9	56	87	0	223	35	22	12	29	1.91
75329--75363	14	2.4	15	90	4	54	51	14	0	34	1.42
77145--77176	16	2.0	16	100	0	64	56	12	12	18	1.67
78548--78832	140	2.0	140	83	4	362	51	11	11	25	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85387--85456	19	3.6	19	82	5	70	54	4	0	41	1.20
85386--85428	20	2.2	20	95	0	77	60	4	0	34	1.17
85419--85478	17	3.6	17	78	14	63	48	1	0	50	1.11
85416--85474	25	2.3	26	80	11	68	47	1	0	50	1.11
85465--85512	21	2.3	20	80	13	53	60	2	6	31	1.33
85554--85653	52	1.9	51	97	2	191	30	7	6	57	1.50
86562--86628	31	2.2	31	83	5	82	26	14	10	47	1.77
96635--96689	27	2.0	27	100	0	110	36	14	3	45	1.63
101059--101125	29	2.3	29	89	0	98	47	22	20	8	1.78
101084--101132	16	3.2	16	69	16	50	51	26	18	4	1.64
105058--105198	51	2.8	51	90	0	219	31	14	24	29	1.95
107383--107458	38	2.0	38	97	0	143	34	15	30	19	1.93
121113--121166	17	3.1	17	81	5	54	59	11	11	18	1.60
121113--121166	18	3.1	18	83	2	65	59	11	11	18	1.60

Tables:   1

The End!