genome.fa.s13959.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013959.1 Kokia drynarioides strain JFW-HI SEQ_128989, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73227

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1204--1250	21	2.2	21	85	7	60	27	2	4	65	1.22
8451--8496	15	3.1	15	70	17	51	26	8	10	54	1.64
13641--14083	138	3.3	133	80	6	457	41	14	13	29	1.85
14835--14865	2	15.5	2	100	0	62	48	0	51	0	1.00
15146--15244	31	3.2	31	77	0	90	30	11	15	43	1.81
17250--17279	2	14.5	2	93	6	51	46	0	3	50	1.18
18805--18886	6	13.7	6	79	7	60	17	30	7	45	1.75
22172--22203	3	10.7	3	100	0	64	65	0	0	34	0.93
22407--22439	17	1.9	17	93	0	57	66	3	0	30	1.06
27823--27890	29	2.3	31	82	10	79	42	1	0	55	1.08
28023--28115	29	3.3	29	74	17	95	48	5	0	46	1.25
27993--28126	56	2.4	56	85	3	164	45	5	0	49	1.24
28260--28326	29	2.3	29	82	12	84	41	0	4	53	1.21
28750--28803	22	2.4	21	73	11	54	61	3	1	33	1.25
32184--32240	19	3.1	19	82	7	64	57	1	0	40	1.09
35109--35210	34	3.0	34	100	0	204	32	17	32	17	1.94
35915--36001	29	3.0	29	88	5	133	37	13	16	32	1.88
38025--38071	23	2.0	23	100	0	94	42	12	17	27	1.85
39088--39170	29	3.2	25	77	15	87	43	2	1	53	1.21
40296--40414	28	4.2	28	75	14	84	31	5	26	36	1.80
40296--40357	27	2.2	28	86	8	83	27	6	29	37	1.82
40362--40418	29	2.0	29	86	13	82	35	5	22	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40343--40657	117	2.7	119	80	8	333	32	3	27	36	1.75
40459--40686	30	7.7	29	81	6	262	31	1	29	38	1.66
40450--40687	59	4.1	60	87	4	317	29	2	30	37	1.71
40450--40717	59	4.5	58	85	6	308	30	2	29	36	1.71
41486--41532	19	2.3	20	85	7	60	23	6	2	68	1.24
42331--42410	39	2.1	39	83	9	101	15	12	26	46	1.81
42445--42527	17	4.6	17	74	14	62	51	7	2	38	1.43
42882--43752	204	4.3	205	89	1	1246	20	20	21	36	1.95
42944--43752	409	2.0	409	90	1	1275	20	20	22	36	1.95
55312--55372	28	2.2	28	81	0	68	26	11	29	32	1.91
55388--55756	29	12.8	29	73	14	241	31	2	27	37	1.70
55474--55571	50	1.9	52	85	10	139	37	1	23	37	1.62
55523--55589	34	2.0	34	88	8	102	32	0	25	41	1.56
57372--57451	39	2.1	39	81	9	92	17	12	23	46	1.82
57485--57535	17	2.9	17	77	8	50	45	5	1	47	1.38
57592--57617	13	2.0	13	100	0	52	38	0	15	46	1.46
59587--59756	90	1.9	90	95	0	304	44	4	10	40	1.60
59724--59818	26	3.6	25	71	10	75	51	0	8	40	1.32
59776--59862	42	2.1	42	85	8	115	51	0	10	37	1.36
59715--59927	97	2.2	98	89	5	335	50	0	8	41	1.33
62352--62376	6	4.2	6	100	0	50	64	0	0	36	0.94
63265--63378	50	2.3	50	90	1	176	50	3	10	35	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68795--68873	24	3.5	23	70	16	76	62	3	2	31	1.27
68801--68888	43	2.0	43	95	0	158	55	4	2	37	1.33
69500--69610	55	2.0	55	100	0	222	39	19	16	24	1.91
70398--70454	17	3.4	17	82	0	78	40	1	1	56	1.20
70393--70457	28	2.3	28	81	5	69	36	1	1	60	1.16
72233--72629	30	13.7	30	74	10	276	31	32	3	31	1.75
72228--72642	59	7.2	58	79	10	379	31	33	3	30	1.76
72358--72469	50	2.2	50	90	0	170	33	31	2	32	1.72

Tables:   1

The End!