genome.fa.s13960.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013960.1 Kokia drynarioides strain JFW-HI SEQ_128991, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137648

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6278--6303	2	13.0	2	100	0	52	50	0	0	50	1.00
7530--7659	65	2.0	65	87	3	190	38	7	29	24	1.83
8352--8382	16	2.0	16	93	6	55	12	25	16	45	1.83
25410--25801	52	7.6	52	85	4	490	27	13	22	36	1.92
25409--25801	102	3.8	103	86	3	488	27	13	22	36	1.92
25409--25801	154	2.5	153	88	3	565	27	13	22	36	1.92
27014--27063	21	2.4	21	96	0	91	14	8	38	40	1.75
30353--30385	6	5.7	6	96	3	59	27	0	0	72	0.85
32224--32286	24	2.6	24	87	0	90	49	11	14	25	1.76
35811--35847	6	6.2	6	100	0	74	16	35	16	32	1.91
47910--47968	30	2.0	30	86	6	84	35	18	3	42	1.67
48061--48523	227	2.0	228	87	2	671	48	12	15	24	1.79
57260--57345	40	2.2	40	97	2	165	51	6	4	37	1.50
65559--65695	29	4.7	29	74	11	111	40	2	27	29	1.71
66637--66724	3	29.0	3	76	11	81	32	2	3	61	1.25
66752--66792	21	2.0	20	86	13	57	41	2	12	43	1.55
67463--67544	6	13.3	6	71	14	51	51	4	3	40	1.41
75736--75766	16	1.9	16	93	0	53	35	0	12	51	1.40
80728--80758	16	1.9	16	100	0	62	77	12	9	0	0.99
81689--82047	30	12.3	29	67	15	127	36	2	27	33	1.71
81689--82001	58	5.4	58	77	10	250	36	2	27	32	1.72
81689--82047	58	6.1	57	77	13	227	36	2	27	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82892--82935	12	3.7	12	96	0	79	31	4	0	63	1.14
82892--82940	3	16.0	3	87	4	71	32	4	0	63	1.13
83707--83770	17	3.7	18	76	19	55	54	3	1	40	1.25
84258--84356	51	1.9	51	100	0	198	26	20	19	34	1.96
84475--84893	49	8.3	49	70	14	203	15	26	19	38	1.91
84553--84893	98	3.5	97	81	4	396	15	26	19	37	1.92
96059--96297	29	8.2	28	70	16	130	40	3	25	30	1.73
96084--96300	29	7.4	29	72	13	160	39	3	26	30	1.73
96002--96314	59	5.4	59	82	6	309	38	3	25	31	1.74
96108--96377	30	9.2	29	70	12	137	37	2	25	34	1.71
96102--96352	59	4.3	58	84	6	249	37	2	26	33	1.71
97492--97539	13	3.7	13	77	0	51	31	4	4	60	1.35
98289--98351	17	3.7	17	82	0	81	52	3	0	44	1.17
98618--98707	46	2.0	45	89	6	137	33	0	5	61	1.19
99822--100240	49	8.3	49	70	14	203	15	26	19	38	1.91
99900--100240	98	3.5	97	81	4	396	15	26	19	37	1.92
111406--111644	29	8.2	28	70	16	130	40	3	25	30	1.73
111431--111647	29	7.4	29	72	13	160	39	3	26	30	1.73
111349--111661	59	5.4	59	82	6	309	38	3	25	31	1.74
111455--111724	30	9.2	29	70	12	137	37	2	25	34	1.71
111449--111699	59	4.3	58	84	6	249	37	2	26	33	1.71
112839--112886	13	3.7	13	77	0	51	31	4	4	60	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113636--113698	17	3.7	17	82	0	81	52	3	0	44	1.17
113965--114054	46	2.0	45	89	6	137	33	0	5	61	1.19
121156--121207	26	2.0	27	85	11	72	46	11	3	38	1.59
137487--137572	4	21.2	4	79	13	61	63	0	36	0	0.94
137486--137559	13	5.9	13	72	15	75	62	0	37	0	0.96
137487--137572	17	5.3	17	74	13	74	63	0	36	0	0.94
137489--137573	29	2.9	29	77	13	93	63	0	36	0	0.95
137486--137563	20	3.8	20	83	8	95	61	0	38	0	0.96

Tables:   1

The End!