genome.fa.s13962.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013962.1 Kokia drynarioides strain JFW-HI SEQ_128993, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94443

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6348--6566	29	7.4	29	78	3	195	31	3	29	35	1.74
6337--6566	59	3.9	59	82	2	246	30	4	30	34	1.77
7649--7696	21	2.3	21	85	7	62	39	4	2	54	1.32
8443--8520	6	13.5	6	70	17	58	52	3	1	42	1.27
8443--8553	18	6.4	17	77	10	116	53	4	0	41	1.27
11584--11622	21	1.9	19	85	10	51	2	23	0	74	0.94
19853--19883	16	1.9	16	93	0	53	51	12	3	32	1.56
30559--30713	71	2.2	70	96	1	283	34	15	12	38	1.85
31342--31396	30	2.0	27	89	10	76	58	14	16	10	1.64
36871--36952	25	3.5	23	75	16	80	62	8	14	14	1.54
36881--36934	20	2.7	20	85	0	72	64	7	16	11	1.47
37929--37962	16	2.1	16	94	0	59	73	0	5	20	1.04
39176--39215	3	13.3	3	87	10	55	67	2	2	27	1.16
43525--43593	30	2.3	31	80	12	81	5	17	10	66	1.40
43633--43695	5	12.6	5	74	12	58	58	15	15	9	1.62
43630--43694	25	2.6	25	100	0	130	56	15	15	12	1.67
49714--49935	39	5.7	39	74	4	142	24	18	18	39	1.92
51682--51887	5	41.2	5	71	14	52	60	11	15	12	1.59
51683--51761	35	2.3	35	86	0	113	63	10	13	12	1.53
51716--51799	25	3.4	25	80	6	98	61	8	15	14	1.54
51747--51825	35	2.3	35	86	0	113	60	8	16	13	1.57
51683--51885	30	6.8	29	75	8	151	61	10	14	12	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51803--51887	40	2.1	40	87	8	120	58	15	16	9	1.61
51728--51887	20	7.8	20	71	15	94	60	11	15	12	1.60
52286--52604	107	3.0	106	90	2	482	39	18	7	35	1.78
53147--53204	15	3.9	15	77	8	55	67	5	8	18	1.37
53202--53254	15	3.5	15	80	10	63	60	11	20	7	1.55
53162--53230	20	3.5	20	85	0	84	65	5	15	13	1.45
53197--53254	30	1.9	30	92	0	98	60	12	20	6	1.54
53197--53264	30	2.3	30	87	5	93	60	13	20	5	1.54
53262--53300	20	2.0	20	89	0	60	79	5	2	12	1.00
53183--53329	75	2.0	75	86	0	204	65	10	12	10	1.46
53282--53342	15	4.1	15	81	8	70	67	9	9	13	1.43
53231--53342	45	2.5	45	77	0	116	66	11	10	11	1.46
54827--55018	17	11.2	17	86	3	251	42	0	2	55	1.15
55711--55768	3	18.7	3	92	7	98	67	0	0	32	0.91
55999--56077	25	3.2	25	70	15	83	50	3	16	29	1.62
55976--56077	49	2.1	49	87	7	145	50	4	14	29	1.63
56838--57187	30	11.7	30	71	10	218	35	25	4	34	1.76
56845--57339	59	8.3	59	74	11	306	36	25	4	33	1.76
57140--57219	29	2.7	30	79	12	94	32	26	3	37	1.74
56837--57336	30	16.8	29	68	15	125	36	25	4	34	1.76
69371--70471	209	5.3	209	90	1	1679	36	17	22	23	1.95
70800--70898	6	17.2	6	69	15	66	41	1	4	53	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70771--70898	17	7.4	17	79	5	132	39	1	4	53	1.31
70834--70896	29	2.2	29	80	5	74	42	1	3	52	1.27
71820--71982	52	3.2	49	77	13	154	52	3	19	25	1.62
71836--71981	49	2.9	49	77	14	147	52	4	15	27	1.61
71859--71929	25	2.8	26	75	14	78	54	4	16	23	1.59
71858--71941	25	3.4	24	69	12	64	50	3	16	29	1.62
72665--73060	29	13.5	28	67	19	132	34	26	6	32	1.83
72674--73063	59	6.7	59	75	15	257	34	26	6	32	1.82
72665--73066	87	4.6	87	74	15	224	34	25	6	32	1.82
72813--73048	58	4.1	57	79	14	234	33	26	7	33	1.85
74562--74625	28	2.3	27	79	10	67	67	3	6	23	1.28
76127--76570	42	10.9	42	74	12	272	26	15	25	33	1.95
76148--76570	81	5.2	81	78	8	369	26	14	26	33	1.95
76199--76325	38	3.2	38	71	13	121	23	15	29	31	1.96
76229--76570	123	2.8	123	80	4	449	26	14	26	32	1.95
77248--77486	119	2.0	119	98	0	460	30	17	21	30	1.97
88175--88228	16	2.7	22	68	31	66	37	3	0	59	1.15
88185--88222	16	2.4	16	100	0	76	34	5	0	60	1.19
88216--88248	17	1.9	17	100	0	66	36	0	3	60	1.12
88971--89035	3	21.3	3	77	3	58	58	1	3	36	1.23
90208--90554	29	11.9	29	68	18	175	29	25	5	39	1.79
90161--90469	58	5.2	59	84	4	372	29	25	4	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90161--90520	58	6.1	58	81	6	357	29	24	5	40	1.78
94029--94086	15	3.9	14	80	6	62	63	10	12	13	1.51

Tables:   1

The End!