Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013981.1 Kokia drynarioides strain JFW-HI SEQ_129012, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2361
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.26
Warning! 128 characters in sequence are not A, C, G, or T
Found at i:478 original size:216 final size:213
Alignment explanation
Indices: 28--1355 Score: 1170
Period size: 216 Copynumber: 6.2 Consensus size: 213
18 AAGTTCGTCC
* * * * * *
28 AAGATTCAAGAGAGAAATAATTGTCACGTAAATAAGATTTTAATTCAAAGAC-CAAATATTGTTT
1 AAGAATCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTATTTCAAAGACAAAAAT-TTGTTT
* * * ** * ** *
92 ATAAAATGACAAAA-GATTTAGACCAAATGATACGATTTCTCGAGCATCAAATGTTCGAAAAATT
65 ACAAAATGA-AAAACTATTTAAACCAAATGATGTGTTTTC-CGAGCATGGAATGTTCGAAAAAAT
* * ** * * * *
156 GCTTGAAGGAATGGATCGTC-T-TACCCTTTAACGAGCAGAAGTTATAAAATAACCCGTAAAAGT
128 GCTGGAAGGAATGGATCGTCATGAATACTTTAAGGAAC-GAAGTTATAAAAGAACTCGTAAAAGT
* * * **
219 TCGACAAGTTCGGAAGTTCGTCC
192 T-GACAAGTTTGGAAGCTCATAA
* * * * *
242 AAGAACCAAGAGAGAAACAATACTCAGGTAAATAAGTTTTTATTTCAAACACAAAAACTTTTTTT
1 AAGAATCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTATTTCAAAGACAAAAA-TTTGTTT
*
307 ACAAAATGAAAAACTATTTAAACCAAATGATGTGTTTTCCGGACCATGGAATGTTCGAAAAAATG
65 ACAAAATGAAAAACTATTTAAACCAAATGATGTGTTTTCC-GAGCATGGAATGTTCGAAAAAATG
* * * * *
372 CTGGAATGAATGGATCATCATGAATACTTTGAGGAACGAGGTTATAAAAGAACTTGTAAAAGCTT
129 CTGGAAGGAATGGATCGTCATGAATACTTTAAGGAACGAAGTTATAAAAGAACTCGTAAAAG-TT
* **
437 GACAAGTTTGGATGCAAATAA
193 GACAAGTTTGGAAGCTCATAA
* * *
458 AAGAATCAAGAGAGAAACAATTCTCACGTAAACAAGTTTTTA-TTCTAAAGACCAAAAGTTGTTT
1 AAGAATCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTATTTC-AAAGACAAAAATTTGTTT
* * * * *
522 ACAAAATGACAAACTATTTAGACCAAATGATGTGATTTGCCGAGCGTGAAATGTTC-AAAAAATT
65 ACAAAATGAAAAACTATTTAAACCAAATGATGTG-TTTTCCGAGCATGGAATGTTCGAAAAAA-T
* * * *
586 GCTGAAAGGAATGGATCGTCTTGAATACTTTAATGATCCGAAGTTATAAAAGAACTCGTAAAAGT
128 GCTGGAAGGAATGGATCGTCATGAATACTTTAAGGA-ACGAAGTTATAAAAGAACTCGTAAAAGT
* * * * **
651 CTGATAAGATCT-GAAGTTCGTCC
192 -TGACAAG-TTTGGAAGCTCATAA
* * * * * *
674 AAGATTCAAGAGAGAAATAATTGTCACGTAAATAAGATTTTAATTCAAAGAC-CAAATGTTGTTT
1 AAGAATCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTATTTCAAAGACAAAAAT-TTGTTT
* * * * * ** *
738 ATAAAATGACAAAA-GATTTAGACCAAATGATGCGATTTCTCGAGCATCAAATGTTCGAAAAATT
65 ACAAAATGA-AAAACTATTTAAACCAAATGATGTGTTTTC-CGAGCATGGAATGTTCGAAAAAAT
* * * * * * *
802 GCTTGAAGGAATGGATCGTC-T-TACACTTTAACGAGCAGAAGTTATAAAATAACCCGTAAAAGT
128 GCTGGAAGGAATGGATCGTCATGAATACTTTAAGGAAC-GAAGTTATAAAAGAACTCGTAAAAGT
* * * **
865 TCGACAAGTTCGGAAGTTCGTCC
192 T-GACAAGTTTGGAAGCTCATAA
* * * * * *
888 AAGAACCAAGAGAGAAACAATACTCAGGTAAATAAGTTTTTATTACAAACACAAAAACTTTTTTT
1 AAGAATCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTATTTCAAAGACAAAAA-TTTGTTT
* * * *
953 ACAAAATGAGAAACTGTTTAAACCAAATGATGCGTTTTCCGGACCATGGAATGTTCGAAAAAATG
65 ACAAAATGAAAAACTATTTAAACCAAATGATGTGTTTTCC-GAGCATGGAATGTTCGAAAAAATG
* * * *
1018 CTGGAATGAATGGATCATCATGAATACTTTGAGGAACGAAGTTATAAAAGAACTTGTAAAAGCTT
129 CTGGAAGGAATGGATCGTCATGAATACTTTAAGGAACGAAGTTATAAAAGAACTCGTAAAAG-TT
*
1083 GACAAGTTTGGAAGTTCATAA
193 GACAAGTTTGGAAGCTCATAA
* * * * * *
1104 AAGAATCAAGGGAGAAACAATTCTCACGTAAACAAGTTTTAATTCCAAAGACCAAAAGTTGTTTA
1 AAGAATCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTATTTCAAAGACAAAAATTTGTTTA
* * * * * *
1169 CAAAATGACAATCTA-TTAAGACCAAATGATGTGATTTGCCGAGCGTGGAATTTTCAAAAAAATG
66 CAAAATGAAAAACTATTTAA-ACCAAATGATGTG-TTTTCCGAGCATGGAATGTTCGAAAAAATG
* * * * * *
1233 CTGAAAGGAATGGATCGTCTTTAATACTTTAATGATCCGAAGTTATAAAAAAACTCGTAAAAGTT
129 CTGGAAGGAATGGATCGTCATGAATACTTTAAGGA-ACGAAGTTATAAAAGAACTCGTAAAAG-T
* * * * **
1298 TGATAA-TATCGGAAGTTCGTCC
192 TGACAAGT-TTGGAAGCTCATAA
* * *
1320 AAGATTCAAGAGAGAAATAATTGTCACGTAAATAAG
1 AAGAATCAAGAGAGAAACAATTCTCACGTAAATAAG
1356 ATAAAATATT
Statistics
Matches: 903, Mismatches: 179, Indels: 62
0.79 0.16 0.05
Matches are distributed among these distances:
213 3 0.00
214 154 0.17
215 315 0.35
216 395 0.44
217 36 0.04
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (213 bp):
AAGAATCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTATTTCAAAGACAAAAATTTGTTTA
CAAAATGAAAAACTATTTAAACCAAATGATGTGTTTTCCGAGCATGGAATGTTCGAAAAAATGCT
GGAAGGAATGGATCGTCATGAATACTTTAAGGAACGAAGTTATAAAAGAACTCGTAAAAGTTGAC
AAGTTTGGAAGCTCATAA
Found at i:848 original size:430 final size:421
Alignment explanation
Indices: 28--1355 Score: 1281
Period size: 430 Copynumber: 3.1 Consensus size: 421
18 AAGTTCGTCC
* * * *
28 AAGATTCAAGAGAGAAATAATTGTCACGTAAATAAGATTTTAATTCAAAGACCAAATATTGTTTA
1 AAGAATCAAGAGAGAAACAATTCTCACGTAAATAAG-TTTTTATTCAAAGACCAAA-ATTGTTTA
* ** * * *
93 TAAAATGACAAAAGATTTAGACCAAATGATACGATTTCTCGAGCATCAAATGTTCGAAAAATTGC
64 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTC-CGAGCATGAAATGTTCAAAAAATTGC
** * * *
158 TTGAAGGAATGGATCGTCTT--ACCCTTTAACGAGCAGAAGTTATAAAATAACCCGTAAAAGT-T
128 -TGAAGGAATGGATCGTCTTGAATACTTTAACGA-CCGAAGTTATAAAAGAACTCGTAAAAGTCT
* * * * *
220 CGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCAGGTAAATAAGTTTTTAT
191 -GACAAG-TCTGAAGTTCGTCCAAGAATCAAGAGAGAAACAATTCTCACGTAAATAAG-TTTTAA
* * * * *
285 TTCAAACACAAAAACT-TTTTTTACAAAATGA-AAAACTATTTAAACCAAATGATGTGTTTTCCG
253 TTCAAAGAC-CAAA-TGTTGTTTACAAAATGACAAAA-TATTTAGACCAAATGATGTGATTTCC-
* * * * * * * *
348 GACCATGGAATGTTCGAAAAAATGCTGGAATGAATGGATCATCATGAATACTTTGAGGAACGAGG
314 GAGCATGGAATGTTCGAAAAAATGCTTGAAGGAATGGATCGTCAT-TATACTTTAACGAACGAAG
* * * *
413 TTATAAAAGAACTTGTAAAAGCTTGACAAGTTTGGATGCAAATAA
378 TTATAAAAAAACTCGTAAAAG-TTGACAAGTTCGGAAGCAAATAA
*
458 AAGAATCAAGAGAGAAACAATTCTCACGTAAACAAGTTTTTATTCTAAAGACCAAAAGTTGTTTA
1 AAGAATCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTATTC-AAAGACCAAAA-TTGTTTA
* *
523 CAAAATGACAAACTATTTAGACCAAATGATGTGATTTGCCGAGCGTGAAATGTTCAAAAAATTGC
64 CAAAATGACAAACTATTTAGACCAAATGATGCGATTT-CCGAGCATGAAATGTTCAAAAAATTGC
*
588 TGAAAGGAATGGATCGTCTTGAATACTTTAATGATCCGAAGTTATAAAAGAACTCGTAAAAGTCT
128 TG-AAGGAATGGATCGTCTTGAATACTTTAACGA-CCGAAGTTATAAAAGAACTCGTAAAAGTCT
* * * *
653 GATAAGATCTGAAGTTCGTCCAAGATTCAAGAGAGAAATAATTGTCACGTAAATAAGATTTTAAT
191 GACAAG-TCTGAAGTTCGTCCAAGAATCAAGAGAGAAACAATTCTCACGTAAATAAG-TTTTAAT
* * *
718 TCAAAGACCAAATGTTGTTTATAAAATGACAAAAGATTTAGACCAAATGATGCGATTTCTCGAGC
254 TCAAAGACCAAATGTTGTTTACAAAATGACAAAATATTTAGACCAAATGATGTGATTTC-CGAGC
** * * *
783 ATCAAATGTTCGAAAAATTGCTTGAAGGAATGGATCGTC-TTACACTTTAACGAGCAGAAGTTAT
318 ATGGAATGTTCGAAAAAATGCTTGAAGGAATGGATCGTCATTATACTTTAACGAAC-GAAGTTAT
* * **** **
847 AAAATAACCCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCC
382 AAAAAAACTCGTAAAAGTT-GACAAGTTCGGAAGCAAATAA
* * * * * *
888 AAGAACCAAGAGAGAAACAATACTCAGGTAAATAAGTTTTTATTACAAACACAAAAACTTTTTTT
1 AAGAATCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTATT-CAAAGACCAAAA--TTGTTT
* * * * * *
953 ACAAAATGAGAAACTGTTTAAACCAAATGATGCGTTTTCCGGACCATGGAATGTTCGAAAAAA-T
63 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC-GAGCATGAAATGTTC-AAAAAATT
* * * * * * *
1017 GCTGGAATGAATGGATCATCATGAATACTTTGAGGAACGAAGTTATAAAAGAACTTGTAAAAG-C
126 GCT-GAAGGAATGGATCGTCTTGAATACTTTAACGACCGAAGTTATAAAAGAACTCGTAAAAGTC
* * ** * *
1081 TTGACAAGTTTGGAAGTTCATAAAAGAATCAAGGGAGAAACAATTCTCACGTAAACAAGTTTTAA
190 -TGACAAGTCT-GAAGTTCGTCCAAGAATCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTAA
* ** *
1146 TTCCAAAGACCAAAAGTTGTTTACAAAATGACAATCTATTAAGACCAAATGATGTGATTTGCCGA
253 TT-CAAAGACCAAATGTTGTTTACAAAATGACAAAATATTTAGACCAAATGATGTGATTT-CCGA
* * * * * *
1211 GCGTGGAATTTTCAAAAAAATGC-TGAAAGGAATGGATCGTCTTTAATACTTTAATGATCCGAAG
316 GCATGGAATGTTCGAAAAAATGCTTG-AAGGAATGGATCGTCATT-ATACTTTAACGA-ACGAAG
* **** **
1275 TTATAAAAAAACTCGTAAAAGTTTGATAA-TATCGGAAGTTCGTCC
378 TTATAAAAAAACTCGTAAAAG-TTGACAAGT-TCGGAAGCAAATAA
* * *
1320 AAGATTCAAGAGAGAAATAATTGTCACGTAAATAAG
1 AAGAATCAAGAGAGAAACAATTCTCACGTAAATAAG
1356 ATAAAATATT
Statistics
Matches: 750, Mismatches: 121, Indels: 52
0.81 0.13 0.06
Matches are distributed among these distances:
429 36 0.05
430 363 0.48
431 159 0.21
432 188 0.25
433 4 0.01
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (421 bp):
AAGAATCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTATTCAAAGACCAAAATTGTTTACA
AAATGACAAACTATTTAGACCAAATGATGCGATTTCCGAGCATGAAATGTTCAAAAAATTGCTGA
AGGAATGGATCGTCTTGAATACTTTAACGACCGAAGTTATAAAAGAACTCGTAAAAGTCTGACAA
GTCTGAAGTTCGTCCAAGAATCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTAATTCAAAGA
CCAAATGTTGTTTACAAAATGACAAAATATTTAGACCAAATGATGTGATTTCCGAGCATGGAATG
TTCGAAAAAATGCTTGAAGGAATGGATCGTCATTATACTTTAACGAACGAAGTTATAAAAAAACT
CGTAAAAGTTGACAAGTTCGGAAGCAAATAA
Found at i:1237 original size:646 final size:646
Alignment explanation
Indices: 1--1357 Score: 2489
Period size: 646 Copynumber: 2.1 Consensus size: 646
1 AAGTCTGATAAGATCGGAAGTTCGTCCAAGATTCAAGAGAGAAATAATTGTCACGTAAATAAGAT
1 AAGTCTGATAAGATCGGAAGTTCGTCCAAGATTCAAGAGAGAAATAATTGTCACGTAAATAAGAT
66 TTTAATTCAAAGACCAAATATTGTTTATAAAATGACAAAAGATTTAGACCAAATGATACGATTTC
66 TTTAATTCAAAGACCAAATATTGTTTATAAAATGACAAAAGATTTAGACCAAATGATACGATTTC
*
131 TCGAGCATCAAATGTTCGAAAAATTGCTTGAAGGAATGGATCGTCTTACCCTTTAACGAGCAGAA
131 TCGAGCATCAAATGTTCGAAAAATTGCTTGAAGGAATGGATCGTCTTACACTTTAACGAGCAGAA
196 GTTATAAAATAACCCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACA
196 GTTATAAAATAACCCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACA
*
261 ATACTCAGGTAAATAAGTTTTTATTTCAAACACAAAAACTTTTTTTACAAAATGAAAAACTATTT
261 ATACTCAGGTAAATAAGTTTTTATTACAAACACAAAAACTTTTTTTACAAAATGAAAAACTATTT
*
326 AAACCAAATGATGTGTTTTCCGGACCATGGAATGTTCGAAAAAATGCTGGAATGAATGGATCATC
326 AAACCAAATGATGCGTTTTCCGGACCATGGAATGTTCGAAAAAATGCTGGAATGAATGGATCATC
* *
391 ATGAATACTTTGAGGAACGAGGTTATAAAAGAACTTGTAAAAGCTTGACAAGTTTGGATGCAAAT
391 ATGAATACTTTGAGGAACGAAGTTATAAAAGAACTTGTAAAAGCTTGACAAGTTTGGAAGCAAAT
* *
456 AAAAGAATCAAGAGAGAAACAATTCTCACGTAAACAAGTTTTTATTCTAAAGACCAAAAGTTGTT
456 AAAAGAATCAAGAGAGAAACAATTCTCACGTAAACAAGTTTTAATTCCAAAGACCAAAAGTTGTT
* *
521 TACAAAATGACAAACTATTTAGACCAAATGATGTGATTTGCCGAGCGTGAAATGTTCAAAAAATT
521 TACAAAATGACAAACTATTAAGACCAAATGATGTGATTTGCCGAGCGTGAAATGTTCAAAAAAAT
*
586 GCTGAAAGGAATGGATCGTCTTGAATACTTTAATGATCCGAAGTTATAAAAGAACTCGTAA
586 GCTGAAAGGAATGGATCGTCTTGAATACTTTAATGATCCGAAGTTATAAAAAAACTCGTAA
*
647 AAGTCTGATAAGATCTGAAGTTCGTCCAAGATTCAAGAGAGAAATAATTGTCACGTAAATAAGAT
1 AAGTCTGATAAGATCGGAAGTTCGTCCAAGATTCAAGAGAGAAATAATTGTCACGTAAATAAGAT
* *
712 TTTAATTCAAAGACCAAATGTTGTTTATAAAATGACAAAAGATTTAGACCAAATGATGCGATTTC
66 TTTAATTCAAAGACCAAATATTGTTTATAAAATGACAAAAGATTTAGACCAAATGATACGATTTC
777 TCGAGCATCAAATGTTCGAAAAATTGCTTGAAGGAATGGATCGTCTTACACTTTAACGAGCAGAA
131 TCGAGCATCAAATGTTCGAAAAATTGCTTGAAGGAATGGATCGTCTTACACTTTAACGAGCAGAA
842 GTTATAAAATAACCCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACA
196 GTTATAAAATAACCCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACA
* *
907 ATACTCAGGTAAATAAGTTTTTATTACAAACACAAAAACTTTTTTTACAAAATGAGAAACTGTTT
261 ATACTCAGGTAAATAAGTTTTTATTACAAACACAAAAACTTTTTTTACAAAATGAAAAACTATTT
972 AAACCAAATGATGCGTTTTCCGGACCATGGAATGTTCGAAAAAATGCTGGAATGAATGGATCATC
326 AAACCAAATGATGCGTTTTCCGGACCATGGAATGTTCGAAAAAATGCTGGAATGAATGGATCATC
***
1037 ATGAATACTTTGAGGAACGAAGTTATAAAAGAACTTGTAAAAGCTTGACAAGTTTGGAAGTTCAT
391 ATGAATACTTTGAGGAACGAAGTTATAAAAGAACTTGTAAAAGCTTGACAAGTTTGGAAGCAAAT
*
1102 AAAAGAATCAAGGGAGAAACAATTCTCACGTAAACAAGTTTTAATTCCAAAGACCAAAAGTTGTT
456 AAAAGAATCAAGAGAGAAACAATTCTCACGTAAACAAGTTTTAATTCCAAAGACCAAAAGTTGTT
* * *
1167 TACAAAATGACAATCTATTAAGACCAAATGATGTGATTTGCCGAGCGTGGAATTTTCAAAAAAAT
521 TACAAAATGACAAACTATTAAGACCAAATGATGTGATTTGCCGAGCGTGAAATGTTCAAAAAAAT
*
1232 GCTGAAAGGAATGGATCGTCTTTAATACTTTAATGATCCGAAGTTATAAAAAAACTCGTAA
586 GCTGAAAGGAATGGATCGTCTTGAATACTTTAATGATCCGAAGTTATAAAAAAACTCGTAA
* *
1293 AAGTTTGATAATATCGGAAGTTCGTCCAAGATTCAAGAGAGAAATAATTGTCACGTAAATAAGAT
1 AAGTCTGATAAGATCGGAAGTTCGTCCAAGATTCAAGAGAGAAATAATTGTCACGTAAATAAGAT
1358 AAAATATTTA
Statistics
Matches: 685, Mismatches: 26, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
646 685 1.00
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (646 bp):
AAGTCTGATAAGATCGGAAGTTCGTCCAAGATTCAAGAGAGAAATAATTGTCACGTAAATAAGAT
TTTAATTCAAAGACCAAATATTGTTTATAAAATGACAAAAGATTTAGACCAAATGATACGATTTC
TCGAGCATCAAATGTTCGAAAAATTGCTTGAAGGAATGGATCGTCTTACACTTTAACGAGCAGAA
GTTATAAAATAACCCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACA
ATACTCAGGTAAATAAGTTTTTATTACAAACACAAAAACTTTTTTTACAAAATGAAAAACTATTT
AAACCAAATGATGCGTTTTCCGGACCATGGAATGTTCGAAAAAATGCTGGAATGAATGGATCATC
ATGAATACTTTGAGGAACGAAGTTATAAAAGAACTTGTAAAAGCTTGACAAGTTTGGAAGCAAAT
AAAAGAATCAAGAGAGAAACAATTCTCACGTAAACAAGTTTTAATTCCAAAGACCAAAAGTTGTT
TACAAAATGACAAACTATTAAGACCAAATGATGTGATTTGCCGAGCGTGAAATGTTCAAAAAAAT
GCTGAAAGGAATGGATCGTCTTGAATACTTTAATGATCCGAAGTTATAAAAAAACTCGTAA
Found at i:2039 original size:214 final size:214
Alignment explanation
Indices: 1666--2257 Score: 715
Period size: 214 Copynumber: 2.8 Consensus size: 214
1656 NNNNNNNNNN
* * ** * * * * *
1666 ACCAAATGATGCG-TTTTCCTGACCATGGAATGTTCGAAAAATTGCTGGAATGAATGGATCATCA
1 ACCAAATGATGCGATTTGCC-GAGCATCAAATGTTCGAAAAATTCCTGAAAGGAATGAATCGTC-
* * * *
1730 TGAATACTTTGAGGAACGAAGTTATAAAAGAACAT-GTAAAAGCTTGACAAGTTTGGAAGTTCAT
64 TTAATACCTTAACGAACGAAGTTATAAAAGAAC-TCGTAAAAGCTTGACAAGTTTGGAAGTTCAT
1794 AAAAGAATCAAGAGAGAAACAATTCTCACGTAAACAAGTTTTTAATCCAAAGACCAAAAGTTGTT
128 AAAAGAATCAAGAGAGAAACAATTCTCACGTAAACAAGTTTTTAATCCAAAGACCAAAAGTTGTT
1859 TACAAAATGACAAACTATTTAG
193 TACAAAATGACAAACTATTTAG
* ** *
1881 ACCAAATGATGCGATTT-CTCGAGCATCAAATGTTCGAAAAATTGCTTCAAGGAATGAATTGTCT
1 ACCAAATGATGCGATTTGC-CGAGCATCAAATGTTCGAAAAATTCCTGAAAGGAATGAATCGTCT
1945 T-ATACCTTAACGAACAGAAGTTATAAAAGAACTCGTAAAAGCTTGACAAGTTTGGAAGTTCATA
65 TAATACCTTAACGAAC-GAAGTTATAAAAGAACTCGTAAAAGCTTGACAAGTTTGGAAGTTCATA
* * * *
2009 AAAGAATCAAGGGAGAAACAATTTTCACGTAAATAAGTTTTTATTCCAAAGACCAAAAGTTGTTT
129 AAAGAATCAAGAGAGAAACAATTCTCACGTAAACAAGTTTTTAATCCAAAGACCAAAAGTTGTTT
2074 ACAAAATGACAAACTATTTAG
194 ACAAAATGACAAACTATTTAG
* ** ** * *
2095 ACCAAATGATGTGATTTGCCGAGTGTGGAATGTTCTAAAAATTCCTGAAAGGAATGGATCGTCTT
1 ACCAAATGATGCGATTTGCCGAGCATCAAATGTTCGAAAAATTCCTGAAAGGAATGAATCGTCTT
* * * * * * * * * *
2160 GAATACTTTAATGATCTGAAGTTTTAAAAGAACTCGTAAAAGTTTGATAAGATCGGAAGTTCGTC
66 -AATACCTTAACGAAC-GAAGTTATAAAAGAACTCGTAAAAGCTTGACAAGTTTGGAAGTTCATA
* * * *
2225 CAAGATTCAAGAGAGAAATAATTGTCACGTAAA
129 AAAGAATCAAGAGAGAAACAATTCTCACGTAAA
2258 TAAGATAAAA
Statistics
Matches: 326, Mismatches: 44, Indels: 13
0.85 0.11 0.03
Matches are distributed among these distances:
213 12 0.04
214 181 0.56
215 49 0.15
216 84 0.26
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (214 bp):
ACCAAATGATGCGATTTGCCGAGCATCAAATGTTCGAAAAATTCCTGAAAGGAATGAATCGTCTT
AATACCTTAACGAACGAAGTTATAAAAGAACTCGTAAAAGCTTGACAAGTTTGGAAGTTCATAAA
AGAATCAAGAGAGAAACAATTCTCACGTAAACAAGTTTTTAATCCAAAGACCAAAAGTTGTTTAC
AAAATGACAAACTATTTAG
Done.