Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013983.1 Kokia drynarioides strain JFW-HI SEQ_129014, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111211
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.34
Warning! 451 characters in sequence are not A, C, G, or T
Found at i:11034 original size:18 final size:18
Alignment explanation
Indices: 10996--11045 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
10986 AACTATAATA
*
10996 AATAAAAATTATTATAATTT
1 AATAAAAA-TA-TAAAATTT
11016 AATAAAAATATAAAATTT
1 AATAAAAATATAAAATTT
*
11034 ATTAAAAATATA
1 AATAAAAATATA
11046 TTTTTTTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 18 0.64
19 2 0.07
20 8 0.29
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
AATAAAAATATAAAATTT
Found at i:11104 original size:37 final size:36
Alignment explanation
Indices: 10997--11105 Score: 87
Period size: 37 Copynumber: 3.0 Consensus size: 36
10987 ACTATAATAA
* * * *
10997 ATAAAAATTATTATAATTTAATAAAAATATAAAATTT
1 ATAAAAAATATTA-AATTTTATAAAAATTTAAAAATT
* *** *
11034 ATTAAAAATATATT--TTTTTATAAATCGTAAAAAATT
1 A-TAAAAA-ATATTAAATTTTATAAAAATTTAAAAATT
11070 ATAAAAAATATTAAACTTTTATAAAAATTTAAAAAT
1 ATAAAAAATATTAAA-TTTTATAAAAATTTAAAAAT
11106 AAAATAAAAT
Statistics
Matches: 53, Mismatches: 14, Indels: 10
0.69 0.18 0.13
Matches are distributed among these distances:
34 5 0.09
35 6 0.11
36 15 0.28
37 17 0.32
38 6 0.11
39 4 0.08
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (36 bp):
ATAAAAAATATTAAATTTTATAAAAATTTAAAAATT
Found at i:11382 original size:9 final size:9
Alignment explanation
Indices: 11289--11455 Score: 59
Period size: 9 Copynumber: 17.2 Consensus size: 9
11279 TTTTAGTACA
11289 ATAATTTTT
1 ATAATTTTT
*
11298 ATATTTTTT
1 ATAATTTTT
* *
11307 TTACGAATTTT
1 ATA--ATTTTT
*
11318 ATATTTCTTT
1 ATAATT-TTT
11328 AT-ATTTTCT
1 ATAATTTT-T
11337 ATAATTTTTCT
1 ATAA-TTTT-T
11348 ATATATTTTT
1 ATA-ATTTTT
***
11358 -TAAAAATT
1 ATAATTTTT
*
11366 ACAATTTTT
1 ATAATTTTT
11375 ATAATTTTTT
1 ATAA-TTTTT
* *
11385 CTAATTTTA
1 ATAATTTTT
*
11394 ATAAATTTTAA
1 AT-AATTTT-T
*
11405 ATATTTTTTT
1 ATA-ATTTTT
11415 ATAATTTTTT
1 ATAA-TTTTT
* *
11425 ATTAAAATTTA
1 A-T-AATTTTT
11436 ATAATTTTT
1 ATAATTTTT
*
11445 ATAACTTTT
1 ATAATTTTT
11454 AT
1 AT
11456 TTTTTTCTTT
Statistics
Matches: 116, Mismatches: 27, Indels: 30
0.67 0.16 0.17
Matches are distributed among these distances:
8 5 0.04
9 45 0.39
10 32 0.28
11 31 0.27
12 3 0.03
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.62
Consensus pattern (9 bp):
ATAATTTTT
Found at i:11389 original size:10 final size:10
Alignment explanation
Indices: 11370--11453 Score: 55
Period size: 10 Copynumber: 8.3 Consensus size: 10
11360 AAAATTACAA
11370 TTTTTATAAT
1 TTTTTATAAT
*
11380 TTTTTCTAA-
1 TTTTTATAAT
*
11389 TTTTAATAAAT
1 TTTTTAT-AAT
** *
11400 TTTAAATATT
1 TTTTTATAAT
11410 TTTTTATAAT
1 TTTTTATAAT
*
11420 TTTTTATTAAA
1 TTTTTA-TAAT
* *
11431 ATTTAATAA-
1 TTTTTATAAT
11440 TTTTTATAACT
1 TTTTTATAA-T
11451 TTT
1 TTT
11454 ATTTTTTTCT
Statistics
Matches: 56, Mismatches: 13, Indels: 9
0.72 0.17 0.12
Matches are distributed among these distances:
9 12 0.21
10 28 0.50
11 16 0.29
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:11436 original size:32 final size:30
Alignment explanation
Indices: 11389--11453 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
11379 TTTTTTCTAA
* * *
11389 TTTTAATAAATTTTAAATATTTTTTTATAATT
1 TTTTAATAAAATTT-AATA-ATTTTTATAACT
*
11421 TTTTATTAAAATTTAATAATTTTTATAACT
1 TTTTAATAAAATTTAATAATTTTTATAACT
11451 TTT
1 TTT
11454 ATTTTTTTCT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 13 0.45
31 4 0.14
32 12 0.41
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (30 bp):
TTTTAATAAAATTTAATAATTTTTATAACT
Found at i:11839 original size:65 final size:65
Alignment explanation
Indices: 11735--11905 Score: 324
Period size: 65 Copynumber: 2.6 Consensus size: 65
11725 TTCCGCCAAT
11735 ATTTTATAATAACTTCTTTAGGCCCTTTGACTTTTGGACTTTATGGGTCATAACCACAATTAAAC
1 ATTTTATAATAACTTCTTTAGGCCCTTTGACTTTTGGACTTTATGGGTCATAACCACAATTAAAC
*
11800 ATTTTAAAATAACTTCTTTAGGCCCTTTGACTTTTGGACTTTATGGGTCATAACCACAATTAAAC
1 ATTTTATAATAACTTCTTTAGGCCCTTTGACTTTTGGACTTTATGGGTCATAACCACAATTAAAC
*
11865 ATTTTATAATAACTTCTTTAGGCCCTTTTACTTTTGGACTT
1 ATTTTATAATAACTTCTTTAGGCCCTTTGACTTTTGGACTT
11906 GGCATAACAA
Statistics
Matches: 103, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 103 1.00
ACGTcount: A:0.28, C:0.18, G:0.12, T:0.42
Consensus pattern (65 bp):
ATTTTATAATAACTTCTTTAGGCCCTTTGACTTTTGGACTTTATGGGTCATAACCACAATTAAAC
Found at i:14687 original size:5 final size:5
Alignment explanation
Indices: 14677--14705 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
14667 CCTCATTCAA
14677 AACCC AACCC AACCC AACCC AACCC AACC
1 AACCC AACCC AACCC AACCC AACCC AACC
14706 TAAACATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.41, C:0.59, G:0.00, T:0.00
Consensus pattern (5 bp):
AACCC
Found at i:20560 original size:17 final size:19
Alignment explanation
Indices: 20533--20567 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
20523 GCCCAGGGGG
20533 TCAAGTTTAAT-TTTTTTT
1 TCAAGTTTAATCTTTTTTT
20551 TCAA-TTTAATCTTTTTT
1 TCAAGTTTAATCTTTTTT
20568 AAATTTACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.23, C:0.09, G:0.03, T:0.66
Consensus pattern (19 bp):
TCAAGTTTAATCTTTTTTT
Found at i:26036 original size:28 final size:28
Alignment explanation
Indices: 26005--26058 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
25995 AATATTATAA
26005 TAAATCATTCATTTCGATAATTAATTTG
1 TAAATCATTCATTTCGATAATTAATTTG
* * *
26033 TAAATGATTCATTTTGATATTTAATT
1 TAAATCATTCATTTCGATAATTAATT
26059 GTTTTTTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.35, C:0.07, G:0.07, T:0.50
Consensus pattern (28 bp):
TAAATCATTCATTTCGATAATTAATTTG
Found at i:41251 original size:18 final size:18
Alignment explanation
Indices: 41228--41268 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
41218 AATGGGGCTG
41228 TTCTTAGTAAGAATCCTT
1 TTCTTAGTAAGAATCCTT
41246 TTCTTAGTAAGAATCCTT
1 TTCTTAGTAAGAATCCTT
41264 TTCTT
1 TTCTT
41269 TATTTGTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.24, C:0.17, G:0.10, T:0.49
Consensus pattern (18 bp):
TTCTTAGTAAGAATCCTT
Found at i:54402 original size:19 final size:19
Alignment explanation
Indices: 54380--54424 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
54370 TTATATTAGG
54380 ATTTAATATTTAAGA-TATT
1 ATTTAATATTTAA-ATTATT
* *
54399 ATTTATTATTTAAATTTTT
1 ATTTAATATTTAAATTATT
54418 ATTTAAT
1 ATTTAAT
54425 TTATGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 1 0.05
19 21 0.95
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (19 bp):
ATTTAATATTTAAATTATT
Found at i:55255 original size:16 final size:16
Alignment explanation
Indices: 55231--55271 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
55221 CTTCCCTATT
55231 TTTTA-TTTCTTTTAA
1 TTTTATTTTCTTTTAA
*
55246 TTTTATTTTCTTTTAT
1 TTTTATTTTCTTTTAA
55262 TTTTAATTTT
1 TTTT-ATTTT
55272 GTTTCTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 5 0.22
16 13 0.57
17 5 0.22
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTATTTTCTTTTAA
Found at i:55276 original size:21 final size:22
Alignment explanation
Indices: 55240--55286 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
55230 TTTTTATTTC
*
55240 TTTTAATTTTATTTTCTTTTAT
1 TTTTAATTTTAGTTTCTTTTAT
55262 TTTTAATTTT-GTTTCTTTTAT
1 TTTTAATTTTAGTTTCTTTTAT
55283 TTTT
1 TTTT
55287 CCTTAGATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 14 0.58
22 10 0.42
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.79
Consensus pattern (22 bp):
TTTTAATTTTAGTTTCTTTTAT
Found at i:73613 original size:22 final size:22
Alignment explanation
Indices: 73577--73623 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
73567 TTAAATGAAT
* *
73577 TTTTTTAAATGATTTATTATTTA
1 TTTTTTAAATAATTTA-AATTTA
73600 TTTTTTAAA-AATTTAAATTTA
1 TTTTTTAAATAATTTAAATTTA
73621 TTT
1 TTT
73624 ATTTGGTGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 8 0.36
22 5 0.23
23 9 0.41
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (22 bp):
TTTTTTAAATAATTTAAATTTA
Found at i:73731 original size:20 final size:18
Alignment explanation
Indices: 73689--73724 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
73679 ATTATATAAT
73689 ATTTAAATATATACTTTA
1 ATTTAAATATATACTTTA
*
73707 ATTTAAATATATATTTTA
1 ATTTAAATATATACTTTA
73725 TTTTTTATGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTTAAATATATACTTTA
Found at i:73782 original size:91 final size:91
Alignment explanation
Indices: 73673--73839 Score: 253
Period size: 91 Copynumber: 1.8 Consensus size: 91
73663 TTTTTATTTT
* * * *
73673 TTATTTATTATATAATATTTAAATATATACTTTAATTTAAATATATATTTTATTTTTTATGGAGT
1 TTATTTATTATATAATATTTAAATATATACTTTAATTAAAATATATATTTTAATTTTGATGGAAT
73738 CATATTAAATGGAGTCACTCGATTAA
66 CATATTAAATGGAGTCACTCGATTAA
* * * *
73764 TTATTTATTATTTAATATTTAAATATATAGTTTAATTAAAATGTATATTTTAATTTTGGTGGAAT
1 TTATTTATTATATAATATTTAAATATATACTTTAATTAAAATATATATTTTAATTTTGATGGAAT
*
73829 CATGTTAAATG
66 CATATTAAATG
73840 ACGTCAGTAA
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
91 67 1.00
ACGTcount: A:0.37, C:0.04, G:0.09, T:0.50
Consensus pattern (91 bp):
TTATTTATTATATAATATTTAAATATATACTTTAATTAAAATATATATTTTAATTTTGATGGAAT
CATATTAAATGGAGTCACTCGATTAA
Found at i:73810 original size:18 final size:18
Alignment explanation
Indices: 73784--73818 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
73774 TTTAATATTT
73784 AAATATATAGTTTAATTA
1 AAATATATAGTTTAATTA
* *
73802 AAATGTATATTTTAATT
1 AAATATATAGTTTAATT
73819 TTGGTGGAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.49
Consensus pattern (18 bp):
AAATATATAGTTTAATTA
Found at i:74484 original size:111 final size:112
Alignment explanation
Indices: 74362--74569 Score: 330
Period size: 113 Copynumber: 1.9 Consensus size: 112
74352 TTTCTGCAGG
* * *
74362 ACTCCAACACTAGTCCCCCTACCTACCTA-TATATGTATTTTAATTTA-TTTTACATTTGTTAGA
1 ACTCCAACACTAG-CCCCCTACCTACCCACTATATATATTTTAATTTATTTTTACATTTATTAGA
74425 AGCATTATTTTTAGGCATATTTTAATATATTATTACTTTTCTGCAACC
65 AGCATTATTTTTAGGCATATTTTAATATATTATTACTTTTCTGCAACC
*
74473 ACTCCAACACTAGCCCCCTACCTACCCACGTCTATATATTTTAATTTATTTTTACATTTATTAGA
1 ACTCCAACACTAGCCCCCTACCTACCCAC-TATATATATTTTAATTTATTTTTACATTTATTAGA
* *
74538 AGTATTGTTTTTAGGCATATTTTAATATATTA
65 AGCATTATTTTTAGGCATATTTTAATATATTA
74570 GAGAGTAATA
Statistics
Matches: 88, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
110 14 0.16
111 13 0.15
112 16 0.18
113 45 0.51
ACGTcount: A:0.29, C:0.20, G:0.07, T:0.44
Consensus pattern (112 bp):
ACTCCAACACTAGCCCCCTACCTACCCACTATATATATTTTAATTTATTTTTACATTTATTAGAA
GCATTATTTTTAGGCATATTTTAATATATTATTACTTTTCTGCAACC
Found at i:77232 original size:11 final size:11
Alignment explanation
Indices: 77216--77240 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
77206 TATGATTTGT
77216 AAATTACTAAG
1 AAATTACTAAG
77227 AAATTACTAAG
1 AAATTACTAAG
77238 AAA
1 AAA
77241 CATCACCTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.08, G:0.08, T:0.24
Consensus pattern (11 bp):
AAATTACTAAG
Found at i:78996 original size:12 final size:13
Alignment explanation
Indices: 78972--79021 Score: 57
Period size: 13 Copynumber: 3.9 Consensus size: 13
78962 GTCATTTAAA
78972 TTAAATAAATTTT
1 TTAAATAAATTTT
78985 TTAAAT-AATTTT
1 TTAAATAAATTTT
** *
78997 TTATTTATATTTT
1 TTAAATAAATTTT
*
79010 TAAAATAAATTT
1 TTAAATAAATTT
79022 AAATTTTTTT
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
12 10 0.34
13 19 0.66
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (13 bp):
TTAAATAAATTTT
Found at i:79027 original size:25 final size:25
Alignment explanation
Indices: 78980--79027 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
78970 AATTAAATAA
* * **
78980 ATTTTTTAAATAATTTTTTATTTAT
1 ATTTTTAAAATAAATTTAAATTTAT
79005 ATTTTTAAAATAAATTTAAATTT
1 ATTTTTAAAATAAATTTAAATTT
79028 TTTTTGTGGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (25 bp):
ATTTTTAAAATAAATTTAAATTTAT
Found at i:79065 original size:77 final size:76
Alignment explanation
Indices: 78899--79051 Score: 193
Period size: 76 Copynumber: 2.0 Consensus size: 76
78889 CACTTTAATT
* * *
78899 AAATAAA-TTTTTTAATTATTTTTTATTTATATTTTTAAAATAATTTAAAATTTTTTTGGTGGCG
1 AAATAAACATTTTAAATAATTTTTTATTTATATTTTTAAAATAATTTAAAATTTTTTTGGTGGCG
* *
78963 TCATTTAAATT
66 CCATTTAAATG
** * *
78974 AAATAAATTTTTTAAATAATTTTTTATTTATATTTTTAAAATAAATTT-AAATTTTTTTTGTGGT
1 AAATAAACATTTTAAATAATTTTTTATTTATATTTTTAAAAT-AATTTAAAATTTTTTTGGTGGC
79038 GCCATATTAAATG
65 GCCAT-TTAAATG
79051 A
1 A
79052 CGTCACCATT
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
75 7 0.10
76 50 0.72
77 12 0.17
ACGTcount: A:0.37, C:0.03, G:0.07, T:0.54
Consensus pattern (76 bp):
AAATAAACATTTTAAATAATTTTTTATTTATATTTTTAAAATAATTTAAAATTTTTTTGGTGGCG
CCATTTAAATG
Found at i:79175 original size:13 final size:13
Alignment explanation
Indices: 79133--79188 Score: 51
Period size: 13 Copynumber: 4.3 Consensus size: 13
79123 TTAAAGTTTA
*
79133 AAAATTAAATACT
1 AAAATTAAATAAT
* ** *
79146 AATATTTTATTAT
1 AAAATTAAATAAT
79159 AAAA-TATAATAAT
1 AAAATTA-AATAAT
79172 AAAATTAAATAAT
1 AAAATTAAATAAT
79185 AAAA
1 AAAA
79189 AAGAAAAATA
Statistics
Matches: 32, Mismatches: 9, Indels: 4
0.71 0.20 0.09
Matches are distributed among these distances:
12 1 0.03
13 29 0.91
14 2 0.06
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (13 bp):
AAAATTAAATAAT
Found at i:92733 original size:35 final size:35
Alignment explanation
Indices: 92687--92765 Score: 140
Period size: 35 Copynumber: 2.2 Consensus size: 35
92677 TTGCGATAGC
92687 ATTAATCATTGCATAGTTAACCAGGTCCTTCCCTT
1 ATTAATCATTGCATAGTTAACCAGGTCCTTCCCTT
92722 ATTAATCATTGCATAGTTAACCAGGTCCTTCCCTT
1 ATTAATCATTGCATAGTTAACCAGGTCCTTCCCTT
*
92757 CTTGAATCA
1 ATT-AATCA
92766 AGGCAATATG
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
35 37 0.88
36 5 0.12
ACGTcount: A:0.27, C:0.25, G:0.11, T:0.37
Consensus pattern (35 bp):
ATTAATCATTGCATAGTTAACCAGGTCCTTCCCTT
Found at i:96962 original size:6 final size:6
Alignment explanation
Indices: 96951--96980 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
96941 GACACACTCT
*
96951 TGCTCC TGCTCC TACTCC TGCTCC TGCTCC
1 TGCTCC TGCTCC TGCTCC TGCTCC TGCTCC
96981 CACTTGGACT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.03, C:0.50, G:0.13, T:0.33
Consensus pattern (6 bp):
TGCTCC
Found at i:96967 original size:18 final size:18
Alignment explanation
Indices: 96946--96980 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
96936 ACCTGGACAC
*
96946 ACTCTTGCTCCTGCTCCT
1 ACTCCTGCTCCTGCTCCT
96964 ACTCCTGCTCCTGCTCC
1 ACTCCTGCTCCTGCTCC
96981 CACTTGGACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.06, C:0.49, G:0.11, T:0.34
Consensus pattern (18 bp):
ACTCCTGCTCCTGCTCCT
Done.