Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013995.1 Kokia drynarioides strain JFW-HI SEQ_129026, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2591
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.35


Found at i:2526 original size:6 final size:6

Alignment explanation


    Indices: 2492--2547  Score: 53
    Period size: 6  Copynumber: 9.5  Consensus size: 6

       2482 TAATAGGGAT

                                   *   *                    *      *
       2492 TTTCAA TTTACAA -TTC-A TATCAC TTTCAA TTTCAA TTTCAC TTTCAC
          1 TTTCAA TTT-CAA TTTCAA TTTCAA TTTCAA TTTCAA TTTCAA TTTCAA

                      
       2539 TTTCAA TTT
          1 TTTCAA TTT

       2548 TGTTCACAAA


Statistics
Matches: 41,  Mismatches: 6, Indels: 6
        0.77            0.11        0.11

Matches are distributed among these distances:
   4    1  0.02
   5    3  0.07
   6   34  0.83
   7    3  0.07

ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50


Consensus pattern (6 bp):   
TTTCAA

Found at i:2534 original size:18 final size:18

Alignment explanation


    Indices: 2511--2547  Score: 65
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       2501 ACAATTCATA

                              
       2511 TCACTTTCAATTTCAATT
          1 TCACTTTCAATTTCAATT

                     *        
       2529 TCACTTTCACTTTCAATT
          1 TCACTTTCAATTTCAATT

             
       2547 T
          1 T

       2548 TGTTCACAAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.24, C:0.24, G:0.00, T:0.51


Consensus pattern (18 bp):   
TCACTTTCAATTTCAATT

Done.