genome.fa.s13998.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013998.1 Kokia drynarioides strain JFW-HI SEQ_129029, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  301293

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14524--14548	5	5.0	5	100	0	50	60	20	20	0	1.37
16756--16791	18	2.1	17	89	5	54	33	19	0	47	1.50
17931--17974	17	2.6	17	96	0	79	38	0	40	20	1.53
17931--18011	17	4.7	17	78	14	76	40	1	39	18	1.59
37784--37861	36	2.2	36	84	11	99	33	14	5	47	1.66
46619--46662	20	2.1	22	87	8	65	38	2	0	59	1.10
46919--46972	23	2.3	23	80	0	72	51	0	5	42	1.25
53777--53801	2	12.5	2	100	0	50	52	48	0	0	1.00
61394--61451	23	2.6	22	81	5	71	13	20	27	37	1.91
62407--62486	23	3.5	22	84	3	97	37	27	21	13	1.91
62471--62528	23	2.5	23	83	8	64	43	17	25	13	1.86
64216--64357	60	2.4	59	88	3	205	30	14	16	38	1.89
83723--83748	2	13.0	2	100	0	52	50	0	0	50	1.00
83745--83782	12	3.2	12	92	0	58	55	7	5	31	1.51
84765--84804	19	2.1	19	100	0	80	55	17	10	17	1.69
90437--90476	21	1.9	21	85	10	55	57	12	15	15	1.66
95812--95864	25	2.1	25	82	6	63	58	1	1	37	1.20
98532--98566	11	3.3	11	84	8	54	25	0	5	68	1.11
111408--111441	3	11.3	3	100	0	68	0	32	0	67	0.91
113645--113736	30	3.1	29	92	6	148	58	13	3	25	1.50
114601--114645	20	2.3	20	85	11	58	60	2	0	37	1.09
119006--119041	3	12.0	3	100	0	72	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120381--120423	16	2.7	16	79	13	52	51	18	13	16	1.77
129100--129399	60	5.0	58	73	14	209	29	16	15	38	1.89
129407--129848	59	7.3	59	72	10	270	38	16	16	27	1.91
129451--129848	119	3.3	116	77	12	367	37	17	17	27	1.92
137224--137259	11	3.2	11	88	4	54	58	0	0	41	0.98
137223--137263	11	3.3	13	80	19	52	58	0	0	41	0.98
139069--139116	25	1.9	25	100	0	96	39	12	31	16	1.86
139129--139191	22	2.9	22	90	0	99	42	28	19	9	1.82
141980--142041	28	2.3	27	86	13	83	46	0	0	53	1.00
141982--142041	18	3.3	18	77	13	52	48	0	0	51	1.00
141974--142039	10	7.0	10	76	11	59	46	0	1	51	1.10
151856--151908	27	2.0	27	85	3	72	66	0	1	32	1.03
156449--156491	22	2.0	22	86	13	63	34	0	0	65	0.93
161977--162019	22	2.0	21	81	9	50	46	0	11	41	1.40
165646--165855	105	2.0	105	97	0	395	38	10	20	31	1.86
167569--167635	6	11.0	6	71	9	55	56	1	2	38	1.24
167615--167661	22	2.1	23	84	4	60	55	8	0	36	1.31
170235--170261	3	9.0	3	100	0	54	33	0	0	66	0.92
170681--170730	20	2.5	20	83	3	66	62	6	4	28	1.37
176995--177037	3	14.3	3	95	0	77	65	0	2	32	1.06
177267--177519	127	2.0	127	95	0	452	33	21	11	33	1.89
177690--177735	18	2.5	19	82	10	51	8	10	2	78	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179905--179996	46	2.0	46	100	0	184	41	19	8	30	1.82
179997--180043	19	2.6	18	83	6	51	53	0	2	44	1.12
180101--180173	9	8.0	9	71	19	53	61	1	4	32	1.23
180056--180120	33	2.0	32	85	8	87	55	4	0	40	1.21
180101--180173	19	4.0	18	72	15	60	61	1	4	32	1.23
181709--181746	13	2.9	13	84	7	51	52	2	7	36	1.45
185828--185909	41	2.0	41	87	0	119	36	10	13	39	1.80
200921--201041	57	2.1	58	87	4	183	26	19	6	47	1.74
211227--211325	29	3.2	29	66	18	83	46	1	9	43	1.42
211215--211337	63	2.0	63	93	0	210	46	1	8	43	1.45
214087--214124	20	1.9	20	84	10	51	44	10	2	42	1.52
214429--214486	23	2.6	23	80	2	73	51	1	3	43	1.28
215007--215042	16	2.1	16	90	10	54	61	0	5	33	1.19
215016--215050	18	1.9	18	88	0	52	60	2	5	31	1.35
215796--215858	21	2.8	23	72	20	60	53	0	1	44	1.10
225531--225609	30	2.6	30	88	4	106	40	2	5	51	1.37
225524--225609	31	2.8	30	82	7	102	40	2	5	51	1.39
225657--225698	21	1.9	21	90	9	66	45	2	0	52	1.13
239409--240397	493	2.0	493	98	0	1924	38	21	13	25	1.91
262630--262676	25	1.9	25	86	4	69	61	10	4	23	1.46
278090--278380	97	3.0	96	88	3	422	38	15	17	28	1.90
278728--278832	28	3.8	28	88	3	131	31	5	29	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
278811--279241	29	14.8	29	74	14	205	37	4	22	36	1.74
278811--279239	88	4.9	86	74	13	283	37	4	22	36	1.73
278991--279061	28	2.5	29	82	11	85	39	4	19	36	1.71
278881--279239	29	12.3	29	73	15	210	36	4	21	37	1.73
278904--279241	30	11.6	30	73	13	233	37	4	21	37	1.72
280963--281016	11	4.8	11	75	4	54	57	1	1	38	1.20
280956--281040	17	5.0	17	80	5	100	57	3	1	37	1.23
280955--281040	23	3.8	23	73	13	70	56	3	1	38	1.24
280956--281040	34	2.5	34	84	3	118	57	3	1	37	1.23
283907--283988	32	2.6	32	84	0	110	24	14	10	50	1.75
290492--290593	30	3.7	29	71	25	85	44	0	1	52	1.18

Tables:   1

The End!