Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001400.1 Kokia drynarioides strain JFW-HI SEQ_112888, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6051
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.34


Found at i:133 original size:19 final size:19

Alignment explanation


    Indices: 98--154  Score: 73
    Period size: 18  Copynumber: 3.1  Consensus size: 19

         88 TTTTAAAAAA

                       *       
         98 TATAAAT-TTTGGAATTTT
          1 TATAAATATTTTGAATTTT

                               
        116 TATAAATATTTTGAA-TTT
          1 TATAAATATTTTGAATTTT

              *                 
        134 TAAAAATTATTTTGAATTTT
          1 TATAAA-TATTTTGAATTTT

             
        154 T
          1 T

        155 TTTGTAATTT


Statistics
Matches: 34,  Mismatches: 2, Indels: 4
        0.85            0.05        0.10

Matches are distributed among these distances:
  18   15  0.44
  19   15  0.44
  20    4  0.12

ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56


Consensus pattern (19 bp):   
TATAAATATTTTGAATTTT

Found at i:1346 original size:31 final size:31

Alignment explanation


    Indices: 1308--1373  Score: 96
    Period size: 31  Copynumber: 2.1  Consensus size: 31

       1298 ATAATTATGC

                       *      *   *        
       1308 ACATAAAACTTTGATTTTTATTTAAATGTAT
          1 ACATAAAACTTCGATTTTAATTCAAATGTAT

                                     *     
       1339 ACATAAAACTTCGATTTTAATTCAATTGTAT
          1 ACATAAAACTTCGATTTTAATTCAAATGTAT

                
       1370 ACAT
          1 ACAT

       1374 TTAATTTTTT


Statistics
Matches: 31,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  31   31  1.00

ACGTcount: A:0.39, C:0.11, G:0.06, T:0.44


Consensus pattern (31 bp):   
ACATAAAACTTCGATTTTAATTCAAATGTAT
Done.