genome.fa.s14026.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014026.1 Kokia drynarioides strain JFW-HI SEQ_129057, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  272674

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1981--2022	12	3.2	13	86	6	50	19	0	2	78	0.86
7818--7999	101	1.8	101	81	0	229	37	20	16	25	1.93
8325--8361	17	2.1	17	90	5	56	72	0	0	27	0.84
10241--10290	25	2.0	25	100	0	100	32	24	12	32	1.91
10593--10677	9	11.2	9	66	33	58	47	0	0	52	1.00
10568--10728	29	5.4	29	93	2	268	47	0	0	50	1.10
12568--13158	292	2.0	292	94	0	1038	31	25	13	29	1.94
14209--14242	2	17.0	2	100	0	68	50	0	0	50	1.00
17613--17651	21	1.9	20	89	5	60	43	2	0	53	1.14
21622--21650	3	9.7	3	100	0	58	34	0	31	34	1.58
25136--25168	16	2.0	17	94	5	59	69	6	0	24	1.10
25699--25728	14	2.1	14	93	0	51	33	0	0	66	0.92
25702--25745	20	2.2	20	83	0	52	29	0	2	68	1.02
31792--31851	30	1.9	32	83	12	81	66	8	1	23	1.28
37381--37438	13	4.5	13	74	25	52	31	0	1	67	1.01
41395--41541	72	2.0	72	94	0	258	44	14	22	18	1.86
53918--53953	18	2.0	18	100	0	72	22	11	11	55	1.66
58122--58195	33	2.2	33	88	4	105	31	5	14	48	1.67
59605--59656	19	2.8	18	80	11	52	7	11	1	78	1.02
62775--62815	3	13.7	3	94	0	73	36	29	34	0	1.58
65814--65847	2	17.0	2	100	0	68	0	50	0	50	1.00
77714--77749	16	2.2	16	90	9	56	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84152--84213	31	2.0	31	100	0	124	6	22	19	51	1.69
84825--85338	269	1.9	269	91	1	852	27	23	15	34	1.94
86550--86598	22	2.2	22	88	0	71	20	24	24	30	1.98
95059--95135	38	2.0	38	94	0	136	44	7	7	40	1.62
99779--99841	26	2.4	27	84	10	85	36	19	25	19	1.94
104621--104663	15	2.9	14	78	21	52	46	4	2	46	1.36
105357--105428	30	2.3	31	85	7	92	50	6	2	40	1.44
107893--107953	20	3.0	21	88	9	74	31	8	18	42	1.79
107907--107953	20	2.3	20	96	3	85	27	4	21	46	1.69
108372--108625	45	5.7	45	77	6	212	37	14	20	28	1.91
112156--112199	3	14.7	3	100	0	88	65	0	0	34	0.93
117661--117719	31	1.9	31	86	3	84	30	16	13	38	1.88
117661--117743	31	2.7	31	76	9	80	33	15	13	37	1.86
124450--124493	22	2.0	22	86	0	61	59	15	11	13	1.62
124526--124552	14	1.9	14	100	0	54	37	0	29	33	1.58
129485--129532	17	2.8	17	74	3	51	68	6	0	25	1.12
130501--130909	89	4.6	89	79	9	399	32	2	27	37	1.70
130501--130910	29	13.8	28	76	11	322	32	2	27	37	1.70
130501--130910	59	6.9	58	78	10	332	32	2	27	37	1.70
132025--132097	3	24.0	3	86	8	94	35	1	1	61	1.13
132072--132143	15	4.8	15	71	6	56	34	8	4	52	1.51
132787--132840	17	3.1	18	82	12	69	50	5	0	44	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146839--146886	17	2.8	17	75	15	53	43	0	12	43	1.42
163881--163945	17	3.9	17	75	20	57	73	9	1	15	1.15
174842--174909	18	3.8	17	78	18	59	51	14	11	22	1.74
175295--175395	3	34.0	3	75	20	70	0	29	1	67	1.08
175296--175395	11	9.5	11	70	17	70	1	30	2	67	1.09
175314--175377	14	4.4	14	72	14	58	0	31	3	65	1.08
175295--175391	44	2.2	45	94	3	169	1	28	2	68	1.08
175873--175906	18	1.9	17	88	5	50	0	32	8	58	1.29
191683--191835	70	2.2	70	83	2	182	24	20	32	22	1.98
197414--197453	12	3.2	12	92	3	62	75	2	5	17	1.10
197419--197453	17	2.1	17	89	10	54	77	0	2	20	0.90
198675--198716	21	2.0	22	85	4	59	9	21	4	64	1.42
208904--208943	19	2.1	19	100	0	80	30	15	10	45	1.78
214801--214931	31	4.2	31	96	1	226	66	10	7	15	1.43
214831--214917	18	5.4	18	64	25	68	68	9	5	16	1.35
215147--215177	16	1.9	16	93	0	53	61	0	16	22	1.34
216941--216983	17	2.5	17	92	0	68	53	9	20	16	1.70
220155--220250	37	2.6	37	84	0	120	18	17	31	32	1.95
220188--220263	37	2.1	37	89	0	116	19	17	32	30	1.95
233978--234177	51	3.9	51	88	0	283	36	23	13	27	1.92
241227--241403	51	3.5	50	86	6	248	31	24	14	29	1.95
245634--245726	45	2.1	45	97	0	177	29	17	16	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
254721--254752	7	4.7	7	96	3	57	25	0	0	75	0.81
257266--257351	43	2.0	42	86	2	118	24	0	18	56	1.41
260191--260259	34	2.1	34	83	8	88	65	5	4	24	1.33
264325--264378	22	2.7	20	78	13	58	31	0	1	66	1.02
264407--264444	20	2.0	20	90	10	62	34	0	2	63	1.09
265828--265873	15	3.1	15	76	17	51	56	6	4	32	1.45
266397--266466	31	2.3	30	82	9	88	52	4	1	41	1.30
270826--270856	3	10.3	3	100	0	62	67	0	0	32	0.91
271559--271873	48	6.6	48	80	5	325	37	16	25	20	1.93
271571--271873	72	4.2	72	80	6	294	37	16	25	20	1.93
271559--271873	24	13.2	24	76	3	260	37	16	25	20	1.93
272537--272588	21	2.5	21	100	0	104	23	17	23	36	1.95

Tables:   1

The End!