Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014030.1 Kokia drynarioides strain JFW-HI SEQ_129061, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4057
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34


Found at i:2100 original size:18 final size:17

Alignment explanation


    Indices: 2073--2106  Score: 50
    Period size: 18  Copynumber: 1.9  Consensus size: 17

       2063 GATTATAAGG

                              
       2073 GTTTTATTGTTGTTTTTT
          1 GTTTTATTGTT-TTTTTT

                 *          
       2091 GTTTTTTTGTTTTTTT
          1 GTTTTATTGTTTTTTT

       2107 GCTTGCATCA


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    5  0.33
  18   10  0.67

ACGTcount: A:0.03, C:0.00, G:0.15, T:0.82


Consensus pattern (17 bp):   
GTTTTATTGTTTTTTTT

Found at i:2916 original size:151 final size:151

Alignment explanation


    Indices: 2639--2952  Score: 493
    Period size: 151  Copynumber: 2.1  Consensus size: 151

       2629 TGTCTAAAAA

                                               *     *      * * *       *    
       2639 TTAGACAAAATATATTTGAAGGCAATGGCTTCGCCCGCACTTGAATCGGATATCTTCAGTGTGTT
          1 TTAGACAAAATATATTTGAAGGCAATGGCTTCGCCAGCACTCGAATCGAAGACCTTCAGTATGTT

                                                                             
       2704 AGACTGACGTGTTTTGTTAGACAATAAAATTTGGTTTGGGATGCTACTCAAAATGTCGGCGATTA
         66 AGACTGACGTGTTTTGTTAGACAATAAAATTTGGTTTGGGATGCTACTCAAAATGTCGGCGATTA

                        *        
       2769 CATGTTGATATCGTGGAATGC
        131 CATGTTGATATCATGGAATGC

                                    *            *                           
       2790 TTAGACAAAATATATTTGAAGGCAGTGGCTTCGCCAGGACTCGAATCGAAGACCTTCAGTATGTT
          1 TTAGACAAAATATATTTGAAGGCAATGGCTTCGCCAGCACTCGAATCGAAGACCTTCAGTATGTT

                                       **                           *        
       2855 AGACTGACGTGTTTTGTTAGACAATAATGTTTGGTTTGGGATGCTACTCAAAATGTGGGCGATTA
         66 AGACTGACGTGTTTTGTTAGACAATAAAATTTGGTTTGGGATGCTACTCAAAATGTCGGCGATTA

                            *    
       2920 CATGTTGATATCATGGCATGC
        131 CATGTTGATATCATGGAATGC

               * *      
       2941 TTAAAGAAAATA
          1 TTAGACAAAATA

       2953 ACATAGGAGT


Statistics
Matches: 148,  Mismatches: 15, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
 151  148  1.00

ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32


Consensus pattern (151 bp):   
TTAGACAAAATATATTTGAAGGCAATGGCTTCGCCAGCACTCGAATCGAAGACCTTCAGTATGTT
AGACTGACGTGTTTTGTTAGACAATAAAATTTGGTTTGGGATGCTACTCAAAATGTCGGCGATTA
CATGTTGATATCATGGAATGC

Done.