genome.fa.s14031.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014031.1 Kokia drynarioides strain JFW-HI SEQ_129062, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  261919

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2440--2503	23	2.8	23	85	0	92	57	14	9	18	1.63
12165--12200	11	3.3	11	92	0	54	0	38	0	61	0.96
13089--13136	20	2.5	19	80	10	53	70	4	2	22	1.15
26350--26436	45	1.9	45	85	0	120	17	8	49	25	1.73
26666--26697	15	2.1	15	100	0	64	31	0	56	12	1.37
36127--36164	20	1.9	20	100	0	76	21	31	2	44	1.66
36128--36171	20	2.2	20	87	0	61	25	31	2	40	1.68
37575--37631	27	2.1	27	83	9	71	36	1	14	47	1.54
39924--39970	20	2.3	20	88	3	67	10	10	8	70	1.35
55416--55453	18	2.2	18	85	4	51	36	2	2	57	1.26
56522--56585	27	2.4	27	100	0	128	26	34	23	15	1.95
96130--96176	16	2.9	16	72	15	51	29	0	2	68	1.02
111313--111352	20	2.0	21	90	9	66	50	0	0	50	1.00
117796--118130	60	5.6	60	74	10	254	28	18	14	38	1.90
117768--118092	123	2.7	123	80	7	323	32	16	12	38	1.86
121843--121890	12	3.7	12	75	20	51	52	0	8	39	1.32
122005--122309	86	3.5	86	88	4	454	43	5	3	46	1.45
123465--123521	30	1.9	30	86	13	82	22	1	5	70	1.17
124733--124775	9	4.6	9	83	11	50	79	2	13	4	1.00
127045--127135	30	3.0	30	90	0	128	27	7	3	61	1.39
127045--127126	6	12.5	6	74	18	58	28	6	2	63	1.31
127675--127815	59	2.4	58	76	11	135	42	14	14	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127811--127952	59	2.4	57	82	4	158	33	14	12	40	1.83
151662--151707	24	2.0	23	86	4	65	17	26	6	50	1.70
154323--154357	17	2.1	17	100	0	70	40	0	5	54	1.24
154563--154608	20	2.3	20	85	10	60	43	17	8	30	1.79
157556--157883	139	2.4	139	98	0	647	35	11	16	35	1.86
169538--169690	49	3.1	49	87	4	186	52	7	5	33	1.53
179698--179742	22	2.0	22	100	0	90	31	24	22	22	1.99
179944--179988	22	2.0	22	100	0	90	31	24	22	22	1.99
179656--180148	246	2.0	246	100	0	986	29	17	21	32	1.95
185904--185930	3	9.0	3	100	0	54	33	0	33	33	1.58
187635--187659	3	8.3	3	100	0	50	32	0	0	68	0.90
188989--189031	21	2.0	22	91	8	72	55	0	0	44	0.99
188982--189033	20	2.7	18	83	13	68	61	0	0	38	0.96
189869--189895	2	13.5	2	100	0	54	48	0	0	51	1.00
199776--199813	14	2.6	15	83	8	51	26	0	2	71	1.00
213715--213751	18	2.1	18	89	0	56	48	0	27	24	1.51
216191--216269	37	2.1	38	83	2	97	34	26	18	20	1.96
219354--219393	14	2.7	15	84	7	55	0	22	5	72	1.04
221733--221810	39	2.1	38	87	4	113	53	1	0	44	1.08
222297--222412	60	1.9	61	91	1	189	41	9	9	39	1.70
243686--243735	24	2.1	24	100	0	100	48	8	26	18	1.75
248023--248085	24	2.6	24	80	14	76	22	0	4	73	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
249619--249761	60	2.4	60	75	6	137	27	18	15	39	1.90
249773--249924	58	2.6	58	81	10	166	26	17	16	39	1.91
250652--250707	22	2.5	23	79	2	60	39	26	21	12	1.89
250652--250749	23	4.3	23	73	1	72	40	22	23	13	1.89
252597--252724	68	1.9	68	100	0	256	25	13	21	39	1.89
252573--252875	151	2.0	151	98	0	588	30	13	20	36	1.91
252748--252883	68	2.0	68	98	0	263	27	14	19	38	1.91
252954--253093	59	2.3	60	78	8	151	41	15	16	27	1.88
257975--258147	60	2.9	58	82	8	168	24	14	8	52	1.70
257975--258147	32	5.9	28	71	17	102	24	14	8	52	1.70
258035--258147	28	4.0	27	73	18	95	25	15	7	50	1.71
258296--258366	31	2.3	31	76	9	72	49	8	12	29	1.70
261475--261503	2	14.5	2	100	0	58	51	0	0	48	1.00

Tables:   1

The End!