genome.fa.s14034.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014034.1 Kokia drynarioides strain JFW-HI SEQ_129065, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43384

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
728--770	19	2.2	20	84	12	54	30	4	16	48	1.66
766--883	6	20.0	6	68	13	75	50	2	4	43	1.35
807--897	41	2.2	41	82	1	121	56	3	4	36	1.36
788--862	17	4.4	17	80	6	80	53	4	2	40	1.34
2256--2298	19	2.2	20	84	12	54	30	4	16	48	1.66
2294--2411	6	20.0	6	68	13	75	50	2	4	43	1.35
2335--2425	41	2.2	41	82	1	121	56	3	4	36	1.36
2316--2390	17	4.4	17	80	6	80	53	4	2	40	1.34
2790--3521	206	3.6	206	91	0	1142	22	22	19	35	1.96
3340--3680	158	2.2	158	95	1	612	22	22	21	33	1.97
3133--3885	364	2.1	364	92	1	1233	22	22	20	34	1.97
3497--3954	206	2.2	206	92	1	785	22	23	19	34	1.97
4155--4348	102	1.9	102	88	0	289	31	18	14	35	1.91
4497--4913	50	8.3	50	69	11	228	14	25	20	39	1.91
4648--4926	101	2.8	101	91	1	443	13	26	21	39	1.90
4509--4783	150	1.8	150	88	1	426	14	24	19	41	1.89
4665--4934	51	5.3	51	70	10	212	12	26	20	40	1.88
11666--11723	28	2.1	28	90	0	89	29	13	29	27	1.94
11824--12113	29	9.9	28	67	23	111	36	3	26	33	1.72
11828--12105	58	4.7	58	79	13	193	36	3	26	33	1.73
11828--12105	59	4.7	59	81	10	243	36	3	26	33	1.73
12063--12147	29	2.9	29	87	3	109	41	1	21	36	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27826--27940	58	2.0	58	91	3	187	46	19	0	33	1.56
31008--31032	7	3.6	7	100	0	50	12	44	32	12	1.78

Tables:   1

The End!