Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014038.1 Kokia drynarioides strain JFW-HI SEQ_129069, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5694
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.31

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:4596 original size:26 final size:26

Alignment explanation


    Indices: 4505--4583  Score: 158
    Period size: 26  Copynumber: 3.0  Consensus size: 26

       4495 GATTTAATAC

                                      
       4505 TACGCTATGTTAAAAGTGCATCTTAT
          1 TACGCTATGTTAAAAGTGCATCTTAT

                                      
       4531 TACGCTATGTTAAAAGTGCATCTTAT
          1 TACGCTATGTTAAAAGTGCATCTTAT

                                      
       4557 TACGCTATGTTAAAAGTGCATCTTAT
          1 TACGCTATGTTAAAAGTGCATCTTAT

             
       4583 T
          1 T

       4584 CGATTATATT


Statistics
Matches: 53,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   53  1.00

ACGTcount: A:0.30, C:0.15, G:0.15, T:0.39


Consensus pattern (26 bp):   
TACGCTATGTTAAAAGTGCATCTTAT

Found at i:5190 original size:26 final size:26

Alignment explanation


    Indices: 5154--5206  Score: 106
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       5144 GATTTAATAC

                                      
       5154 TACGCTATGTTAAAAGTGCATCTTAT
          1 TACGCTATGTTAAAAGTGCATCTTAT

                                      
       5180 TACGCTATGTTAAAAGTGCATCTTAT
          1 TACGCTATGTTAAAAGTGCATCTTAT

             
       5206 T
          1 T

       5207 CGATTATATT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   27  1.00

ACGTcount: A:0.30, C:0.15, G:0.15, T:0.40


Consensus pattern (26 bp):   
TACGCTATGTTAAAAGTGCATCTTAT

Found at i:5218 original size:26 final size:26

Alignment explanation


    Indices: 5154--5219  Score: 89
    Period size: 26  Copynumber: 2.5  Consensus size: 26

       5144 GATTTAATAC

                    *                 
       5154 TACGCTATGTTAAAAGTGCATCTTAT
          1 TACGCTATATTAAAAGTGCATCTTAT

                    *                 
       5180 TACGCTATGTTAAAAGTGCATCTTAT
          1 TACGCTATATTAAAAGTGCATCTTAT

                 *         
       5206 T-CGATTATATTAAA
          1 TACG-CTATATTAAA

       5220 TGGTAGCAAA


Statistics
Matches: 37,  Mismatches: 2, Indels: 2
        0.90            0.05        0.05

Matches are distributed among these distances:
  25    2  0.05
  26   35  0.95

ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39


Consensus pattern (26 bp):   
TACGCTATATTAAAAGTGCATCTTAT
Done.