genome.fa.s14042.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014042.1 Kokia drynarioides strain JFW-HI SEQ_129073, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  199966

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3271--3345	30	2.7	29	82	12	77	46	8	0	45	1.32
4097--4134	20	1.9	20	84	10	51	44	18	0	36	1.50
4868--4901	10	3.3	10	87	4	50	23	0	0	76	0.79
9746--9784	20	2.0	20	84	0	51	28	23	7	41	1.82
12341--12374	13	2.6	13	100	0	68	41	0	5	52	1.25
13118--13158	21	1.9	22	85	5	57	14	26	26	31	1.95
22560--22603	21	2.0	22	86	8	63	36	22	18	22	1.95
27793--27930	36	3.8	37	86	7	178	22	21	15	40	1.91
33207--33242	15	2.4	15	90	0	54	66	5	13	13	1.41
44614--44701	38	2.3	38	80	5	90	34	12	21	31	1.91
51408--51450	22	2.0	22	90	0	68	13	32	23	30	1.93
65055--65101	20	2.3	20	96	0	85	36	6	6	51	1.53
73600--73716	61	1.9	63	94	3	211	36	16	11	35	1.85
76828--77012	92	2.0	92	86	0	253	34	18	19	28	1.95
94312--94350	21	1.9	21	94	5	71	15	12	5	66	1.41
97217--97257	18	2.3	18	86	0	55	80	2	14	2	0.92
105496--105534	18	2.3	18	86	8	55	46	30	10	12	1.75
131594--131640	17	2.8	17	77	9	51	55	12	19	12	1.69
132042--132091	18	2.8	18	81	9	57	4	28	2	66	1.21
132130--132169	21	2.0	20	85	5	53	25	47	10	17	1.78
138274--138328	24	2.2	24	87	3	74	49	9	16	25	1.75
141924--142000	26	3.0	26	80	0	91	31	22	18	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151990--152095	26	4.1	26	88	0	140	30	23	18	27	1.98
153386--153429	22	2.0	23	86	4	63	65	6	18	9	1.42
153549--153595	24	2.0	25	91	8	80	51	0	40	8	1.33
153838--153884	24	2.0	24	87	8	69	48	10	14	25	1.76
160135--160187	24	2.2	24	82	0	61	30	24	20	24	1.99
160147--160202	24	2.3	24	90	0	85	30	23	21	25	1.99
167306--167336	16	1.9	16	93	0	53	61	0	16	22	1.34
181395--181440	15	3.1	15	78	6	58	19	10	6	63	1.48
189493--189517	7	3.6	7	100	0	50	44	28	0	28	1.55
198265--198339	19	4.0	19	80	3	89	24	26	18	30	1.98
198280--198332	18	2.8	19	82	5	63	26	24	20	28	1.99
198319--198396	26	3.0	26	88	0	111	26	24	17	30	1.97

Tables:   1

The End!