genome.fa.s14044.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014044.1 Kokia drynarioides strain JFW-HI SEQ_129075, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110638

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5091--5116	2	13.0	2	100	0	52	0	0	50	50	1.00
7569--7778	72	2.9	72	88	0	330	20	25	24	29	1.99
8747--8808	6	10.3	6	82	0	61	11	51	14	22	1.74
8747--8809	18	3.5	18	82	0	81	11	52	14	22	1.72
8704--8976	108	2.5	111	92	3	435	18	41	15	24	1.89
8872--8922	6	8.5	6	95	0	75	13	49	15	21	1.79
8704--8976	114	2.5	109	92	3	440	18	41	15	24	1.89
8878--9250	90	4.3	89	66	24	218	16	42	17	23	1.89
8900--9041	66	2.2	66	96	0	257	17	40	17	23	1.90
9032--9091	6	10.0	6	77	13	61	11	48	18	21	1.80
9032--9089	24	2.4	24	85	0	80	10	48	18	22	1.78
9056--9250	84	2.3	81	83	10	252	15	42	17	24	1.88
8968--9250	102	2.9	99	82	12	352	15	42	17	24	1.88
12622--12660	18	2.2	18	100	0	78	35	10	0	53	1.35
19575--19632	26	2.3	25	84	3	71	67	3	3	25	1.22
25944--25975	17	1.9	16	93	6	55	0	9	0	90	0.45
25946--25975	10	3.1	10	95	4	53	0	6	0	93	0.35
29200--29230	4	7.8	4	100	0	62	25	0	0	74	0.82
49607--49645	6	6.5	6	93	0	51	23	23	0	53	1.46
49603--49641	18	2.2	18	90	0	60	23	28	0	48	1.51
49607--49645	12	3.2	12	88	0	60	23	23	0	53	1.46
56705--56850	45	3.2	45	68	15	129	24	13	10	50	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56671--56850	90	2.0	91	94	1	317	24	13	11	50	1.74
61095--61152	28	2.1	28	100	0	116	56	0	10	32	1.33
61095--61143	16	3.3	16	67	21	52	57	0	10	32	1.32
86670--86812	76	1.9	76	92	2	243	37	10	23	27	1.88
88439--88468	3	10.0	3	100	0	60	66	0	33	0	0.92
97327--97404	29	2.6	30	79	6	77	46	12	8	32	1.73
97755--97822	31	2.2	31	81	5	75	44	11	17	26	1.83
98948--98997	26	1.9	26	91	0	82	54	6	20	20	1.65
99686--99733	18	2.7	18	75	12	53	70	6	4	18	1.25
100222--100262	15	2.5	17	80	11	59	65	0	0	34	0.93
103017--103065	20	2.6	19	78	18	57	12	8	2	77	1.07
103085--103247	43	4.0	42	67	13	122	17	38	5	38	1.73
103080--103238	80	2.0	80	91	2	257	17	35	6	40	1.75
107116--107348	82	2.8	82	100	0	466	35	24	21	18	1.96
107581--107628	23	2.1	22	85	11	62	37	2	0	60	1.09

Tables:   1

The End!