genome.fa.s14046.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014046.1 Kokia drynarioides strain JFW-HI SEQ_129077, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  246777

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
942--973	16	1.9	17	93	6	57	43	0	0	56	0.99
4706--4779	21	3.7	20	74	15	64	59	2	1	36	1.20
7333--7376	22	2.0	22	100	0	88	22	13	22	40	1.89
18550--18852	79	3.9	79	87	0	412	35	12	10	40	1.78
19076--19160	31	2.7	31	81	0	107	37	9	16	36	1.81
22884--22929	15	3.1	15	90	0	65	43	2	4	50	1.34
29477--29544	33	2.1	33	100	0	136	47	11	14	26	1.79
32366--32447	26	3.2	26	61	19	62	34	20	14	30	1.93
32337--32499	52	3.1	52	94	0	281	35	22	14	27	1.93
43712--43746	17	2.1	17	100	0	70	22	0	17	60	1.37
47239--47627	30	13.2	28	75	11	210	35	2	25	35	1.71
47338--47426	29	3.1	29	78	12	87	26	1	29	42	1.63
47409--47627	60	3.7	60	84	7	268	38	1	24	35	1.66
47409--47627	30	7.3	29	81	6	242	38	1	24	35	1.66
47409--47640	90	2.6	88	82	2	293	38	1	24	35	1.66
48550--48588	20	2.0	20	89	0	60	35	0	0	64	0.94
49902--50353	39	11.6	39	74	4	302	24	17	32	25	1.97
49795--50352	156	3.6	157	78	6	565	24	17	31	25	1.97
49863--50352	78	6.3	78	79	6	499	24	17	32	25	1.97
55598--55636	6	6.5	6	87	0	51	23	30	0	46	1.53
60274--60348	32	2.3	33	95	2	134	48	14	14	22	1.81
68699--69274	279	2.0	284	86	6	790	35	19	16	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73226--73262	15	2.3	17	86	9	51	43	0	2	54	1.14
76389--76457	25	2.8	25	85	12	83	52	5	0	42	1.25
76525--76593	34	2.0	34	82	0	84	17	30	4	47	1.67
77057--77133	33	2.3	33	81	4	91	28	7	18	45	1.77
81989--82047	17	3.5	17	75	9	66	18	37	1	42	1.61
81977--82046	34	2.1	34	94	0	122	17	38	2	41	1.64
82883--82920	16	2.4	16	82	4	51	60	2	0	36	1.11
82907--82963	21	2.8	21	79	12	55	63	1	0	35	1.05
87824--87939	62	1.9	61	87	5	173	51	4	2	41	1.35
90324--90459	39	3.5	39	77	0	101	35	19	18	26	1.95
91002--91072	26	2.7	26	76	4	72	23	15	22	38	1.93
98809--98848	18	2.2	18	95	0	71	45	10	2	42	1.51
99416--99492	38	2.0	38	100	0	154	54	18	7	19	1.67
110847--111201	53	6.7	53	82	0	424	28	16	19	35	1.93
111881--111936	20	2.7	21	83	10	71	28	14	23	33	1.94
118115--118416	53	5.7	53	86	1	419	27	14	22	35	1.94
124191--124345	77	2.0	77	96	0	283	28	20	14	37	1.91
124409--124485	28	2.8	28	89	0	109	24	14	19	41	1.89
143816--143859	23	1.9	23	90	0	70	40	15	13	29	1.86
144310--144386	40	1.9	39	97	2	145	50	0	22	27	1.49
148454--148486	17	2.0	17	88	5	50	27	6	21	45	1.75
150660--150692	18	1.9	17	88	11	50	24	3	12	60	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151721--151861	75	1.9	73	89	4	221	13	34	2	48	1.57
152776--152845	23	3.1	23	81	4	90	44	21	5	28	1.75
156119--156191	21	3.3	21	72	24	69	58	13	4	23	1.52
156140--156263	9	13.6	9	68	21	53	58	16	2	22	1.50
156078--156300	46	4.7	46	80	8	218	57	17	2	22	1.52
156140--156300	55	3.1	53	73	15	165	57	17	2	22	1.52
156470--156533	30	2.1	30	85	0	83	62	6	7	23	1.45
157085--157139	28	2.0	28	96	0	101	43	14	20	21	1.87
160827--160873	6	7.7	6	82	17	53	0	19	0	80	0.70
160829--160869	21	2.0	21	95	0	73	0	19	0	80	0.71
180087--180133	16	3.0	15	87	9	67	2	17	0	80	0.80
193602--193703	23	4.5	22	82	2	105	40	24	21	13	1.90
193598--193703	45	2.3	46	79	6	126	41	23	21	13	1.88
204099--204142	16	2.7	15	80	13	52	65	2	6	25	1.28
204084--204133	25	2.0	26	92	4	84	64	4	2	30	1.23
204891--204920	14	2.2	13	94	5	51	83	3	0	13	0.77
212925--212980	28	2.0	28	100	0	112	28	7	14	50	1.69
231046--231149	43	2.4	43	87	4	149	34	11	25	28	1.91
231046--231165	41	2.9	41	83	6	116	35	10	25	27	1.89
234522--234553	12	2.7	12	100	0	64	28	34	31	6	1.82
237816--237862	24	2.0	24	82	0	58	25	25	25	23	2.00
240424--240774	172	2.0	173	96	2	661	32	23	11	32	1.90

Tables:   1

The End!