Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014047.1 Kokia drynarioides strain JFW-HI SEQ_129078, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6744
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35


Found at i:721 original size:21 final size:21

Alignment explanation


    Indices: 697--750  Score: 65
    Period size: 21  Copynumber: 2.6  Consensus size: 21

        687 GTTGTGATGG

                                  
        697 TTCTACCGATACAAGTGTA-AC
          1 TTCTACCGATACAAGT-TATAC

                     *         * 
        718 TTCTACCGAAACAAGTTATGC
          1 TTCTACCGATACAAGTTATAC

              *         
        739 TTTTACCGATAC
          1 TTCTACCGATAC

        751 TAAAAACTCT


Statistics
Matches: 28,  Mismatches: 4, Indels: 2
        0.82            0.12        0.06

Matches are distributed among these distances:
  20    2  0.07
  21   26  0.93

ACGTcount: A:0.31, C:0.24, G:0.13, T:0.31


Consensus pattern (21 bp):   
TTCTACCGATACAAGTTATAC

Found at i:5659 original size:56 final size:56

Alignment explanation


    Indices: 5560--5666  Score: 128
    Period size: 56  Copynumber: 1.9  Consensus size: 56

       5550 ACCGTGTGCT

                                *            * *        *           
       5560 AGACAGTGTGTACATACTGTGTAGTGACACACGGGTTGAGCACATGGGTGTATGGC
          1 AGACAGTGTGTACATACTGTCTAGTGACACACGAGCTGAGCACACGGGTGTATGGC

                *             *                                  
       5616 AGACCGTGTGTACATACTTTCTAAG-GACACACGAGCT-ACGCACACGGGTGT
          1 AGACAGTGTGTACATACTGTCT-AGTGACACACGAGCTGA-GCACACGGGTGT

       5667 GTGTCATACT


Statistics
Matches: 43,  Mismatches: 6, Indels: 4
        0.81            0.11        0.08

Matches are distributed among these distances:
  55    1  0.02
  56   40  0.93
  57    2  0.05

ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23


Consensus pattern (56 bp):   
AGACAGTGTGTACATACTGTCTAGTGACACACGAGCTGAGCACACGGGTGTATGGC
Done.