Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014048.1 Kokia drynarioides strain JFW-HI SEQ_129079, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5960
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.36


Found at i:5045 original size:15 final size:12

Alignment explanation


    Indices: 5011--5035  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       5001 ATTAAATAAT

                        
       5011 TAATAGCATTCA
          1 TAATAGCATTCA

                        
       5023 TAATAGCATTCA
          1 TAATAGCATTCA

             
       5035 T
          1 T

       5036 CATGATAGCA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36


Consensus pattern (12 bp):   
TAATAGCATTCA

Found at i:5270 original size:12 final size:12

Alignment explanation


    Indices: 5253--5285  Score: 50
    Period size: 12  Copynumber: 2.8  Consensus size: 12

       5243 GGATGGAAGG

                        
       5253 CTAGAGAGAAAA
          1 CTAGAGAGAAAA

                        
       5265 CTAGAGAGAAAA
          1 CTAGAGAGAAAA

             *        
       5277 -AAGAGAGAA
          1 CTAGAGAGAA

       5286 TGAATTGTTT


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  11    8  0.40
  12   12  0.60

ACGTcount: A:0.61, C:0.06, G:0.27, T:0.06


Consensus pattern (12 bp):   
CTAGAGAGAAAA
Done.