Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014049.1 Kokia drynarioides strain JFW-HI SEQ_129080, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7677
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.40
Warning! 100 characters in sequence are not A, C, G, or T
Found at i:776 original size:216 final size:214
Alignment explanation
Indices: 1--1888 Score: 2006
Period size: 216 Copynumber: 8.8 Consensus size: 214
* *
1 TTCTC-TTGGTTCTTGGACGAACTTCTAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
1 TTCTCTTTGGTTCTTGGACGAACTTCTGAACTTATCAAACTTTTACGAGTTCTTTTATAACTTCG
* * * * * * *
65 GTTCCTTACAGTATTCAAGATGATACATTCCTTCTA-TCAACTTTCTTAACATTCTATGCTCGAA
66 GTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGT-AATTTTCTGAACATTCCATGCTCGAG
* * * * * * *
129 AAATCGCATCCTTT--TCTAAATTGATTATCATTTTGTAAACAAGTTTTTGTCTTTAAATTTAAA
130 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGGTCTTTGAA-TTAAA
*
192 ACTTATTTACATGAGAATTGTT
194 ACTTATTTACGTGAGAATTG-T
* * * * * *
214 TCTCTCTCTTTGTTCTTGGATGAACTTCTAAACTTTTCAAACTTTTACAAGTTCTTTCATAACTT
1 T-TCTCT-TTGGTTCTTGGACGAACTTCTGAACTTATCAAACTTTTACGAGTTCTTTTATAACTT
* * * * *
279 CGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGGAATTTT-TTAACATTCCATTCTCGA
64 CGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGTAATTTTCTGAACATTCCATGCTCGA
* * * * * ** * * * **
343 GAATTCGCATCATTTAGTCTAAAAAGTTTTTAATTTTGTAAACGAGTTTTGATCATTAAAACAAG
129 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGGTCTTTGAATTAA-
* * * *
408 AACATATTTTCCTGAGGATT-T
193 AACTTATTTACGTGAGAATTGT
* * *
429 TT-TC-TTGGCTGTTGGACGAACTTCTGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTT-G
1 TTCTCTTTGGTTCTTGGACGAACTTCTGAACTTATCAAACTTTTACGAGTTCTTTTATAACTTCG
** * * * * * *
491 GTTCCTTGCAGTATTCAAGACGATCCAATCCATCAAGCAATTTTCTGAACATTCCATGCTCGTGA
66 GTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGTAATTTTCTGAACATTCCATGCTCGAGA
* * **
556 AATCGCATCATTTGGTCTAAATAGTTTGTCATTGTGTAAAAAACTTTTGGTCACTGAATTAAATA
131 AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGGTCTTTGAATTAAA-A
621 CTTATTTACGTGAGAATTGT
195 CTTATTTACGTGAGAATTGT
* *
641 TTCTCTTTTGGTTCTTGGACGAACTTCTGAACTTATCAAATTTTTACGAGTTCTTTTATAATTTC
1 TTCTC-TTTGGTTCTTGGACGAACTTCTGAACTTATCAAACTTTTACGAGTTCTTTTATAACTTC
* * * * * *
706 AGTTCCATAAAGCATTCAAGACGATCCATTCCTTCGAGTAATTTTCCGAACATTCCATGCTCGGG
65 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGTAATTTTCTGAACATTCCATGCTCGAG
* * *
771 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAGGTTTTGTTGTTTGAATTAAAA
130 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGGTCTTTGAATT-AAA
*
836 ACTTATTTACGTGATAATTGT
194 ACTTATTTACGTGAGAATTGT
* * *
857 TTCTCTCTTGGTTCTTGGACGAACTTCCGAAC-TAGTCAAACTTTTATGAGTT-TTTTCATATCT
1 TTCTCT-TTGGTTCTTGGACGAACTTCTGAACTTA-TCAAACTTTTACGAGTTCTTTT-ATAACT
* * * *
920 TCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGTAATTTTCTGAACGTTCGATTCTTG
63 TCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGTAATTTTCTGAACATTCCATGCTCG
* * * *
985 AGAAATAGCAGCATTTGGTCTAAATAGATTGTCATTTTG-AAAACAAGTTTTGGTCTTTGAATCA
128 AGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAA-AAGTTTTGGTCTTTGAATTA
1049 GAAACTTATTTACGTGAGAATTGT
192 -AAACTTATTTACGTGAGAATTGT
* * * *
1073 TTCTC-TTGGTTCTTTGACGAAATTCTGAACTTGTCAAACTTTTACGAATTCTTTTATAACTTCG
1 TTCTCTTTGGTTCTTGGACGAACTTCTGAACTTATCAAACTTTTACGAGTTCTTTTATAACTTCG
* * * * * * * *
1137 GTTCCTTACAGTATTCAAGATGATACATTGCTTCTA-TCAACTTTCTTAACATTCTATGCTCGAA
66 GTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGT-AATTTTCTGAACATTCCATGCTCGAG
* * * * *
1201 AAATCGCATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTTGTCTTTAAATTTAAA
130 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGGTCTTTGAA-TTAAA
*
1265 ACTTATTTACATGAGAATTGTT
194 ACTTATTTACGTGAGAATTG-T
* * * *
1287 TCTCTCTCTTTGTTCTTGGATGAACTTCTAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTT
1 T-TCTCT-TTGGTTCTTGGACGAACTTCTGAACTTATCAAACTTTTACGAGTTCTTTTATAACTT
* * * *
1352 CGGTTTCTTAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTT-TCGAACATTCCATGCTTG
64 CGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGTAATTTTCT-GAACATTCCATGCTCG
* ** * * * * *
1416 GGAAATCAAATCATTTGGTCTAAATAGTTTGTCATTTTGTTAAAAGGTTTCGTTGTTTGAATTAA
128 AGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGGTCTTTGAATTAA
*
1481 AAGCTTATTTACGTAAGAATTGT
193 AA-CTTATTTACGTGAGAATTGT
* * *
1504 TTCTCTCTTGGTTCTTGGTCGAACTT-TCGAAC-TAGTCAAACTTTTACGAGTT-TTTTCGTATC
1 TTCTCT-TTGGTTCTTGGACGAACTTCT-GAACTTA-TCAAACTTTTACGAGTTCTTTT-ATAAC
* * * *
1566 TTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCTGAACATTCAATTCTT
62 TTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGTAATTTTCTGAACATTCCATGCTC
* * * * *
1631 GAGAAATGGCAGCATTTGGTCTAAAGAGTTTGT-GTTTT-TAAAAACAAGTTTTGGTCTTTGCAT
127 GAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAAA-AAGTTTTGGTCTTTGAAT
*
1694 CAAAAACTTATTTACGTGAGAATTGT
190 -TAAAACTTATTTACGTGAGAATTGT
* * * *
1720 TT-TGC-TTGGTTCTTGGACAAACTTTTGAACTTGTTAAACTTTTACGAGTTCTTTTATTAACTT
1 TTCT-CTTTGGTTCTTGGACGAACTTCTGAACTTATCAAACTTTTACGAGTTCTTTTA-TAACTT
** * * * * * * * * *
1783 CAATTCCTTACAGTAATCAGGATGATACATTCCTTCGAGCAACTTTCTTAACATTCTAAGCTCGA
64 CGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGTAATTTTCTGAACATTCCATGCTCGA
* * *
1848 AAAATCGCATCATTT-TTCTAAATTGTTTGTCATTTTGTAAA
129 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
1889 CNNNNNNNNN
Statistics
Matches: 1399, Mismatches: 229, Indels: 92
0.81 0.13 0.05
Matches are distributed among these distances:
210 39 0.03
211 130 0.09
212 3 0.00
213 61 0.04
214 170 0.12
215 200 0.14
216 567 0.41
217 177 0.13
218 52 0.04
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (214 bp):
TTCTCTTTGGTTCTTGGACGAACTTCTGAACTTATCAAACTTTTACGAGTTCTTTTATAACTTCG
GTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGTAATTTTCTGAACATTCCATGCTCGAGA
AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGGTCTTTGAATTAAAAC
TTATTTACGTGAGAATTGT
Found at i:1421 original size:647 final size:647
Alignment explanation
Indices: 2--7677 Score: 6199
Period size: 647 Copynumber: 11.8 Consensus size: 647
1 T
*
2 TCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
1 TCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * *
67 TCCTTACAGTATTCAAGATGATACATTCCTTCT-A-TCAACTTTCTT--AACATTCTATGCTCGA
66 TCCTTAAAGTATTCAAGACGATCCATTCCTT-TGAGT-AA-TTT-TTCGAACATTCCATGCTCGA
* * * * * * * *
128 AAAATCGCATCCTTT--TCTAAATTGATTATCATTTTGTAAACAAGTTTTTG-TCTTTAAATTTA
127 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAGGTTTTGTTCTTTGAATTAA
* * * ** **
190 AAACTTATTTACATGAGAATTGTTTCTCTCTCTTTGTTCTTGGATGAACTTCTAAACTTTTCAAA
191 AAACTTATTTACGTGAGAATTG-TT-TCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAA
* * * * *
255 CTTTTACAAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGGA
254 CTTTTACGAGTTTTTTCATATCTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * * * * * *
320 ATTTT-TTAACATTCCATTCTCGAGAATTCGCATCATTTAGTCTAAAAAGTTTTTAATTTTGTAA
319 ATTTTCTGAACATTCCATTCTCGAGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGAAA
* * * * * * * * * * * *
384 ACGAGTTTTGATCATTAAAACAAGAACATATTTTCCTGAGGATT-TTT-TCTTGGCTGTTGGACG
384 ACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACG
* * *
447 AACTTCTGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTGCAGTATTCAAGA
449 AACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGA
* * * * * * **
511 CGATCCAATCCATCAAGCAATTTTCTGAACATTCCATGCTCGTGAAATCGCATCATTTGGTCTAA
514 TGATCCATTCCTTCGAGCAACTTTCTTAACATTCCATGCTCGAAAAATCGCATCATTTGGTCTAA
* * * **
576 ATAGTTTGTCATTGTGTAAAAAACTTTTGGTCACTGAATTAAATACTTATTTACGTGAGAATTGT
579 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAA-ACTTATTTACGTGAGAATTGT
641 TTCTC
643 TTCTC
* * * *
646 T-T-TTGGTTCTTGGACGAACTTCTGAACTTATCAAATTTTTACGAGTTCTTTTATAATTTCAGT
1 TCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * * *
709 TCCATAAAGCATTCAAGACGATCCATTCCTTCGAGTAATTTTCCGAACATTCCATGCTCGGGAAA
66 TCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTTCGAACATTCCATGCTCGAGAAA
*
774 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAGGTTTTGTTGTTTGAATTAAAAACT
131 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAGGTTTTGTTCTTTGAATTAAAAACT
* *
839 TATTTACGTGATAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTTTAT
196 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTTTAC
* *
904 GAGTTTTTTCATATCTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGTAATTTTCT
261 GAGTTTTTTCATATCTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT
* * * * *
969 GAACGTTCGATTCTTGAGAAATAGCAGCATTTGGTCTAAATAGATTGTCATTTTGAAAACAAGTT
326 GAACATTCCATTCTCGAGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAGTT
* * * *
1034 TTGGTCTTTGAATCAGAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTTGACGAAATTCT
391 TTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCC
* *
1099 GAACTTGTCAAACTTTTACGAATTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGATGATACA
456 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGATGATCCA
* * * * * *
1164 TTGCTTCTATCAACTTTCTTAACATTCTATGCTCGAAAAATCGCATCATTT-TTCTAAATTGTTT
521 TTCCTTCGAGCAACTTTCTTAACATTCCATGCTCGAAAAATCGCATCATTTGGTCTAAATAGTTT
* * *
1228 GTCATTTTGTAAACAAGTTTTTGTCTTTAAATTTAAAACTTATTTACATGAGAATTGTTTCTC
586 GTCATTTTGTAAACAAGTTTTGGTCTTTGAA-TTAAAACTTATTTACGTGAGAATTGTTTCTC
* * * *
1291 TCTCTTTGTTCTTGGATGAACTTCTAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
1 TCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * *
1356 TTCTTAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTTCGAACATTCCATGCTTGGGAAA
66 TCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTTCGAACATTCCATGCTCGAGAAA
** * * * *
1421 TCAAATCATTTGGTCTAAATAGTTTGTCATTTTGTTAAAAGGTTTCGTTGTTTGAATTAAAAGCT
131 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAGGTTTTGTTCTTTGAATTAAAAACT
* * *
1486 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGTCGAACTTTCGAACTAGTCAAACTTTTAC
196 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTTTAC
* *
1551 GAGTTTTTTCGTATCTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCT
261 GAGTTTTTTCATATCTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT
* * * * * ** *
1616 GAACATTCAATTCTTGAGAAATGGCAGCATTTGGTCTAAAGAGTTTGTGTTTTTAAAAACAAGTT
326 GAACATTCCATTCTCGAGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAGTT
* * *
1681 TTGGTCTTTGCATCAAAAACTTATTTACGTGAGAATTGTTT-TGCTTGGTTCTTGGACAAACTTT
391 TTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCT-CTTGGTTCTTGGACGAACTTC
* * ** * * *
1745 TGAACTTGTTAAACTTTTACGAGTTCTTTTATTAACTTCAATTCCTTACAGTAATCAGGATGATA
455 CGAACTTGTCAAACTTTTACGAGTTCTTTTA-TAACTTCGGTTCCTTACAGTATTCAAGATGATC
* * * *
1810 CATTCCTTCGAGCAACTTTCTTAACATTCTAAGCTCGAAAAATCGCATCATTT-TTCTAAATTGT
519 CATTCCTTCGAGCAACTTTCTTAACATTCCATGCTCGAAAAATCGCATCATTTGGTCTAAATAGT
**********************************************
1874 TTGTCATTTTGTAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
584 TTGTCATTTTGTAAAC---AAGTTTTGGTCTTTGAATTAAAACTTATTTACGTGAGAATTGTTTC
**
1939 NA
646 TC
* * ** * ** * * ** * ** *
1941 TCGCATCATTTTTCTA--AATTGTTTGTCATTTTGT-AAACAAGTTTT-TGTCTT-TAAATTTAA
1 TCTCTTGGTTCTTGGACGAACT-TCTG--AACTTGTCAAAC---TTTTACGAGTTCT---TTTAT
** * * * * ** ** ** * * * * * * *
2001 AACTT-ATTTACATGAGAATTGTTC--CTCTCTCTTTGTTCTTGGA-TGAACTTCT-AAACTTTT
57 AACTTCGGTT-CCTTA-AAGTATTCAAGACGATCCAT-TCCTTTGAGT-AATTTTTCGAACATTC
** ** ** * *
2061 CAAACTTTTACGAGCTCTTCTATAACTTTGGTTCCTTAAAGTA-TTCAAGATGATCCATTCCTT-
118 CATGC-TCGA-GAAATC-GC-ATCA-TTTGG-T-C-TAAA-TAGTT-----TG-T-CATT--TTG
* ** * *** * * * *
2124 TAAGGAATTTTTTAACATTCCATTCTCGAGAATT-CGCA-TCATTTA-GTCTA-AATAGTTTTTA
165 TAA-AAAGGTTTT---GTT-C-TT-T---GAATTAAAAACTTATTTACGT-GAGAATTGTTTCT-
* * * ** *** * ** * * * * *
2185 AT-TTTGTAAACGAGTTTTGATCATT-AAAACAAGAACATA-TTTTCCTGAGGATTTTTTCTTGG
218 CTCTTGGT--TCTTG-GACGAAC-TTCCGAACTAG-TCAAACTTTTAC-GA-G-TTTTTTCAT--
* * * * * * * * * ** **
2247 CTGTTGGACGAACTTCTGCACTTTTCAAACTTTTACGAGTTCTTTTAT-AACTTGGTTCCTTGCA
273 ATCTT---CG---GT-T-C-C--TT-AAAGTATT-CAAG-AC---GATCCA-TTCCTT-CGAGCA
* * * * * ** * * * * **
2311 GTATTC-AAGACGA-TCCATTCCTTCAAGTAATTTTCTGAACATTCCATGCTCGGGAAATCGCAT
319 ATTTTCTGA-AC-ATTCCATT-C-TCGAG-AAATAGC--ATCATT---TGGTC--TAAATAGTTT
** * * ** * *
2374 -T-ATTTGGTCTAAA-TAG-TTT-GTCATTGTGTAAAAAACTT-TTGGT-CATTGANNNNNNNNN
372 GTCATTT--TGAAAACAAGTTTTGGTCTTTGAATCAAAAACTTATT--TAC-GTGA---------
********************
2432 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGACGAACTTCCGAACTTGTCAA
423 ---------------------GAATTGTTTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * * * * * *
2497 ACTTTTACGAGTTCTTTTATAATTTCAGTTCCATAAAGCATTCAAGACGATCCATTCCTTTGAGG
467 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGATGATCCATTCCTTCGAGC
*
2562 AA-TTT-TTCGAACATTCCATGCTCGAAAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTG
532 AACTTTCTT--AACATTCCATGCTCGAAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * ** *
2625 TAAAAAACTTTTGGTCACTGAATTAAATACTTATTTACCTGAGAATTGTTTCTC
595 TAAACAAGTTTTGGTCTTTGAATTAAA-ACTTATTTACGTGAGAATTGTTTCTC
* * * *
2679 T-T-TTGGTTCTTGGACGAACTTCTGAACTTATCAAATTTTTACGAGTTCTTTTATAATTTCAGT
1 TCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * ** * *
2742 TCCATAAAGCATTCAAGACGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAAA
66 TCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTTCGAACATTCCATGCTCGAGAAA
* * * * *
2807 TCGCATCATTTGGTCTAAATATTTTGTCATTTTGTTAAAAGGTTTCGTTGTTTGAATTAAAAGCT
131 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAGGTTTTGTTCTTTGAATTAAAAACT
* * *
2872 TATTTACGTGATAATTGTTTCTCTCTTGGTTCGTGGACGAACTTTCGAACTAGTCAAACTTTTAC
196 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTTTAC
*
2937 GAGTTCTTTCATATCTTCGGTTCCTTAAAGTATTCAA-ACGATCCATTCCTTCGAGCAATTTTCT
261 GAGTTTTTTCATATCTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT
* * * * * *
3001 GAACATTCAATTCTTGAGAAATGGCAGCATTTGGTCTAAAGAGTTTGTCATTTTAAAAACAAGTT
326 GAACATTCCATTCTCGAGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAGTT
* * *
3066 TTGTTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCGCTTGGTTCTTGGACAAACTTCC
391 TTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCC
* * ** *
3131 GAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGATTCCTTACAGTATTCAAGACAATACA
456 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGATGATCCA
* * * * * * *
3196 TTCCTTCTAGCAACTTTCTTAACATTCTATGCTCGAAAAATCACATCGTTT-TTCTAAATTGTAT
521 TTCCTTCGAGCAACTTTCTTAACATTCCATGCTCGAAAAATCGCATCATTTGGTCTAAATAGTTT
* *
3260 GTCATTTTGTGAAACAAGTTTT-GTCTTTAAATTAAAAACTTATTTATGTGAGAATTGTTTCTC
586 GTCATTTTGT-AAACAAGTTTTGGTCTTTGAATT-AAAACTTATTTACGTGAGAATTGTTTCTC
* ** * * *
3323 TCTCTTTGTTCTTGGATAAACTTCTAAACTTTTCAAACTTTTACAAGTTCTTTTATAACTTCGGT
1 TCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* *
3388 TCCTTAAAGTATTCAAGACGATCCATTCCTTTGTGGAATTTTTCGAACATTCCATGCTCGAGAAA
66 TCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTTCGAACATTCCATGCTCGAGAAA
* * * * * *
3453 GCACATCATTTGGTCTAAATAGTTTGTCATTTTGTTAAAAGGTTTCGTTGTTTGAATTAAAAGCT
131 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAGGTTTTGTTCTTTGAATTAAAAACT
* * * *
3518 TATTTATGTGAGAATTGTTTCTCTCTAGGTTCTTGGACGAACTTTCGAAGTAGTCAAACTTTTAC
196 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTTTAC
* * * *
3583 GAGTTCTATCATATCTTCGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAGTAATTTTCT
261 GAGTTTTTTCATATCTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT
* * * * * * *
3648 AAACATTCAATTCTTGAGAAATGGCAGCATTTGGTCTAAAGAGTTTGTCATTTTAAAAACAAGTT
326 GAACATTCCATTCTCGAGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAGTT
* * * *
3713 TTGGTCTTTGAATCAGAAACTTATTTACGTCAGAATTGTTTCGCTTGGTTCTTGGACAAACTTCC
391 TTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCC
* * *
3778 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTACAGTATTCAAGACGATACA
456 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGATGAT-CC
* * * * *
3843 ATT-CTTCCAGCAACTTTCTTAACTTTCTATGCTCGAAAAAT-GACATCATTT-TTCTAAATTGT
520 ATTCCTTCGAGCAACTTTCTTAACATTCCATGCTCGAAAAATCG-CATCATTTGGTCTAAATAGT
* *
3905 TTGTCATTTTGTAAACAAGTTTT-GTCTTTAAATTATAAACTTATTTACATGAGAATTGTTTCTC
584 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA-AAACTTATTTACGTGAGAATTGTTTCTC
* ** * * * *
3969 TCTCTTTGTTCTTGGTTGAACTTCTAAACTTTTTAAACTTTTACGAGTTCTTTTATAACTTCAGT
1 TCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * *
4034 TCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGGAA-TTTTCTAACATTCCATTCTCGAGATA
66 TCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTTCGAACATTCCATGCTCGAGAAA
** * * * * * ** *
4098 -CGCATCATTTATTCTAAATAGTTTTTAATTTTGT-AAACGAGTTTT-TATCATTAAAACAAGAA
131 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAG-GTTTTGT-TCTTTGAATTAAAAA
* * * * * * * ** *
4160 CATATTTTCCTGAGGA-T-TTT-T-TCTTGGCTGTTGGACGAACTTCTGAACTTTTCAAACATTT
194 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTTT
* ** * *
4221 ACGAGTTCTTTT-ATAACTT-GGTTCCTTGCAGTATTCAAGACGATCCATTCCATT-AAGAAATT
259 ACGAGTT-TTTTCATATCTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGCAATT
* * * *
4283 TTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTGTGTAAAA-
322 TTCTGAACATTCCATTCTCGAGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTG-AAAAC
* * * *
4347 AACTTTTGGTCATTGAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACG
386 AAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTC--TTGGTTCTTGGACG
** * * * * * *
4412 AACTTCTAAACTTATCAAATTTTTACGAGTTCTTTTATAATTTCAGTT--TTGTCAAGCATTCAA
449 AACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT-AC-AGTATTCAA
* **
4475 GATGATCCATTCCTTCGAGCAA-TTT-TTCGAACTTTCCATGCTCGGGAAATCGCATCATTTGGT
512 GATGATCCATTCCTTCGAGCAACTTTCTT--AACATTCCATGCTCGAAAAATCGCATCATTTGGT
* * * *
4538 CTAAATAGTTTGTCATTTTGTTAAA-AGGTTTCGTTGTTTGAATTAAAAGCTTATTTACGTGAGA
575 CTAAATAGTTTGTCATTTTG-TAAACAAGTTTTGGTCTTTGAATTAAAA-CTTATTTACGTGAGA
*
4602 ATTG-AT-TC
638 ATTGTTTCTC
* * *
4610 TCTCTTGGTTCTTGGACGAACTT-TCGAACTAGTCAAACTTTTACGAGTTCTTTCATATCTTCGG
1 TCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGG
* * * * * * *
4674 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGGACATTCAATTCTTGAGAA
65 TTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTTCGAACATTCCATGCTCGAGAA
* * * * * *
4739 ATGGCAGCATTTGGTCTAAAGAGTTTGTC-TTTT-TAAAACCAAGTTTTGGTCTTTGAATCAAAA
130 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAA--AGGTTTTGTTCTTTGAATTAAAA
* * * * *
4802 ACTTATTTACGTGAGAATTG-TT-TCGCTTGATTCTTGGACAAACTTTCGAACTTGTCAAACTTT
193 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTT
* ** * * * *
4865 TACGAGTTCTTTT-ATAACTTCAATTCCTTACAGTAATCAAGACGATACATTCCTTCGAGCAACT
258 TACGAGTT-TTTTCATATCTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* * ** * * * * *
4929 TTCTTAACATTCTAAGCTCGAAAAATCGCATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACA
322 TTCTGAACATTCCATTCTCGAGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGAAAACA
* * * *
4993 AGTTTT-GTCTTTAAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTCTTTGTTCTTGGAC
387 AGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAA-T-TGT-T-TCTCTTGGTTCTTGGAC
* * * * *
5057 GAACTTCCAAACTTTTCAAACCTTTACGAGTTCTTTTATAACTCCGGTTCCTTAAAGTATTCAAC
448 GAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAA-
* ** * * *** * *
5122 AAT-ATCCATTCCTTTAAGCAA-TTT-TGAACATTCCATTCTCGGGTAATCGCATCATTTAGTCG
512 GATGATCCATTCCTTCGAGCAACTTTCTTAACATTCCATGCTCGAAAAATCGCATCATTTGGTCT
* * * * *
5184 AAATAGTTTTTCGTTTTGTAAACAAGTTTTTGGTCTTTAAAGCTAAAACTTATTAACGTGAGAAT
577 AAATAGTTTGTCATTTTGTAAACAAG-TTTTGGTCTTTGAA-TTAAAACTTATTTACGTGAGAAT
5249 TG-TT-TC
640 TGTTTCTC
* * * * * *
5255 -C-CTTGGCTGTTGGATGAACTTTTGAACTTTTTAAACTTTTACGAGTTCTTTTATAACTT-GGT
1 TCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * *
5317 TCCCTACAA-TATTCAACATGATCCATTCCTTTCGAGCT-A-TTTTCTGACCATTCCATGCTCGA
66 TCCTTA-AAGTATTCAAGACGATCCATTCCTTT-GAG-TAATTTTTC-GAACATTCCATGCTCGA
* * * * * * * *
5379 AAAATCGCATTATTTTGTCTAAATAGTTTGTCATTTTCTGAACAA-CTTTTGGTCTTCGAATTAA
127 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAAAAGGTTTTGTTCTTTGAATTAA
* * * * * *
5443 ATACTTATTTACGCGAGAATTGTTTCTCTTTTAGTTCTTGGACGAACTTTCGAACTTGTCAAACT
191 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACT
* ** * * *
5508 TTTACAAGTTCTTTTACA-AT-TTAAGTTCCATAAAGCATTCAAGACGATCCATTCATTCGAGCA
256 TTTACGAGTT-TTTT-CATATCTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * * * *
5571 ATTTTTTGAACATTCCGTGCTCGAAAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAA
319 ATTTTCTGAACATTCCATTCTCGAGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTG-AA
* * * *
5636 AA-AGGTTTTGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
383 AACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGG
* * * * *
5700 ACGAACTTCCGAACTAGTCAAACTTTTACGAATT-TTTTCATATCTCCGGTTCCTTAAAGTATTC
446 ACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT-ATAACTTCGGTTCCTTACAGTATTC
* * * * * * * * *
5764 AAGATGATCCATTCCTTCGAGCAATTTTCTAAACGTTCGATTCTAGAGAAATAGCAGCATTTGGT
510 AAGATGATCCATTCCTTCGAGCAACTTTCTTAACATTCCATGCTCGAAAAATCGCATCATTTGGT
* * *
5829 CTAAAGAGTTTGTCATTTTGAAAACAAGTTTTGGTCTTTGAATCAGAAACTTATTTACGTGAGAA
575 CTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA-AAACTTATTTACGTGAGAA
5894 TTG--T-T-
639 TTGTTTCTC
5899 TCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
1 TCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * * *
5964 TCCTTACAGTATTCAAGACGATACATTCCTTCT-AGCAACTTTCTT--AACATTCTATGCTCGAA
66 TCCTTAAAGTATTCAAGACGATCCATTCCTT-TGAGTAA-TTT-TTCGAACATTCCATGCTCGAG
* * * * * * *
6026 AAATCACATCATTT-TTGTAAATTGTATGTCATTTTGTAAAACAAGTTTTG-TCTTTAAATTAAA
128 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAA-AGGTTTTGTTCTTTGAATTAAA
* * * ** **
6089 AACTTATTTACGTGAGAATTATTTCTCTCTCTTTGTTCTTGGATGAACTTCTAAACTTTTCAAAC
192 AACTTATTTACGTGAGAATT-GTT-TCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAAC
* * * *
6154 TTTTACGAGTTCTTTT-ATAACTTCGGTTCCTTAAATTATTCAAGACGATCCATTCCTTTGAGGA
255 TTTTACGAGTT-TTTTCATATCTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* *
6218 ATTTT-TCGAACATTCCATGCTCGGGAAATCA-CATCATTTGGTCTAAATAGTTTGTCATTTTGT
319 ATTTTCT-GAACATTCCATTCTCGAGAAAT-AGCATCATTTGGTCTAAATAGTTTGTCATTTTG-
* * * * * * * * *
6281 TAAA-AGGTTTCGTTGTTTGAATTAGAAGCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCT
381 AAAACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTT
* * * * *
6345 GGATGAACTTCCGAACTAGTCAAACTTTTACGAGTTTTTTTATATCTTCGGTTCCTTAAAGTATT
444 GGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATT
* * * * * * * * * *
6410 CAAGATGATCCAATCCTTCGAGCAATTTTCTGAACGTTCGATTCTAGAGAAATAGCAGCATTTGG
509 CAAGATGATCCATTCCTTCGAGCAACTTTCTTAACATTCCATGCTCGAAAAATCGCATCATTTGG
* * * *
6475 TCTAAAGAGATTGTCATTTTGAAAACAAGTTTTGGTCTTTGAATCAGAAACTTATTTACGTGAGA
574 TCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA-AAACTTATTTACGTGAGA
6540 ATTG--T-T-
638 ATTGTTTCTC
*
6546 TCTCTTGGTTCTTGGACGAAATTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
1 TCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * *
6611 TCCTTACAGTATTCAAGACAATACATTCCTTCT-A-TCAACTTTCTT--AACATTCTATGCTCGA
66 TCCTTAAAGTATTCAAGACGATCCATTCCTT-TGAGT-AA-TTT-TTCGAACATTCCATGCTCGA
* * * * *
6672 AAAATCCCATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACAA-GTTTTG-TCTTTAAATTAA
127 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAGGTTTTGTTCTTTGAATTAA
* * * **
6734 AAACTTATTTACGTGAGAATTATTTCTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTTTCAAA
191 AAACTTATTTACGTGAGAATT-GTT-TCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAA
* * * * *
6799 CCTTTATGAGTTCTTTT-ATAACTCCGGTTCCTTAAAGTATTCAACAAC-ATCCATTCCTTTC-A
254 CTTTTACGAGTT-TTTTCATATCTTCGGTTCCTTAAAGTATTCAA-GACGATCCATTCC-TTCGA
* * * *
6861 GCAA-TTT-TGAACATTCCATTCTCGGGTAATCA-CATCATTTAG--TAAATAGTTTTTCATTTT
316 GCAATTTTCTGAACATTCCATTCTCGAGAAAT-AGCATCATTTGGTCTAAATAGTTTGTCATTTT
* * * * * * *
6921 GTAAACAAGTTTTTGGTCTTTAAAACGAAAACTTATTAACGTGAGAATTGTTTCTCTTGGCTGTT
380 GAAAACAAG-TTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTT
* * * * * * *
6986 GGATGAACTTCTGAACTTTTTAAACTTTTACGAGATCTTTTATAACTT-GGCTGCC-TACAATAT
444 GGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGG-TTCCTTACAGTAT
* * * * * * *
7049 TCAAGATGATCCATTCCTTCGAGCTATTTTCTAAACATTCCATGCTCGGAAAATCGTATAATTTT
508 TCAAGATGATCCATTCCTTCGAGCAACTTTCTTAACATTCCATGCTCGAAAAATCGCATCATTTG
* * * *
7114 GTCTAAATAGTTTGTCATTTTGTGAACAACTTTTGGTCTTTGTATTAAATACTTATTTACGCGAG
573 GTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAA-ACTTATTTACGTGAG
7179 AATTGTTTCTC
637 AATTGTTTCTC
* * * *
7190 T-T-TTAGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAATTTCAGT
1 TCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * * * * *
7253 TCCATAAAGCATTCAAGACGATCCATTGCTTCGAGAAATTTTTTGAACATTCCATGCTCGAAAAA
66 TCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTTCGAACATTCCATGCTCGAGAAA
*
7318 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAGGTTTTGTTGTTTGAATTAAAAACT
131 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAGGTTTTGTTCTTTGAATTAAAAACT
*
7383 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTAGTCAAACTTTTAC
196 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTTTAC
*
7448 GAGTTTTTTCATATCTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCT
261 GAGTTTTTTCATATCTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT
* * * * *
7513 GAACGTTCGATTCTAGAGAAATAGCAGCATTTGGTCTAAAGAGTTTGTCATTTTGAAAACAAGTT
326 GAACATTCCATTCTCGAGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAGTT
* * *
7578 TTGGTCTTTGAATCATAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAAATTCT
391 TTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCC
7643 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
456 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
Statistics
Matches: 5693, Mismatches: 1051, Indels: 575
0.78 0.14 0.08
Matches are distributed among these distances:
639 132 0.02
640 180 0.03
641 271 0.05
642 521 0.09
643 376 0.07
644 352 0.06
645 716 0.13
646 959 0.17
647 1379 0.24
648 125 0.02
649 4 0.00
650 13 0.00
651 5 0.00
652 3 0.00
653 19 0.00
654 24 0.00
655 10 0.00
657 3 0.00
658 5 0.00
659 1 0.00
660 1 0.00
661 6 0.00
662 2 0.00
666 2 0.00
667 1 0.00
668 4 0.00
669 2 0.00
670 7 0.00
673 11 0.00
674 3 0.00
675 17 0.00
676 30 0.01
677 10 0.00
678 7 0.00
679 19 0.00
680 11 0.00
681 4 0.00
682 10 0.00
683 15 0.00
684 10 0.00
685 1 0.00
687 3 0.00
689 2 0.00
690 7 0.00
691 3 0.00
692 1 0.00
693 2 0.00
694 1 0.00
695 3 0.00
696 7 0.00
697 3 0.00
699 2 0.00
700 1 0.00
701 7 0.00
702 18 0.00
703 2 0.00
704 10 0.00
705 5 0.00
706 7 0.00
707 23 0.00
708 5 0.00
709 24 0.00
710 29 0.01
711 5 0.00
712 9 0.00
713 2 0.00
716 7 0.00
717 2 0.00
718 4 0.00
719 1 0.00
720 2 0.00
724 2 0.00
725 6 0.00
726 1 0.00
727 1 0.00
728 5 0.00
729 3 0.00
730 1 0.00
731 9 0.00
732 21 0.00
733 19 0.00
734 3 0.00
735 5 0.00
736 9 0.00
737 5 0.00
738 7 0.00
739 65 0.01
740 63 0.01
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.40
Consensus pattern (647 bp):
TCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
TCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTTCGAACATTCCATGCTCGAGAAA
TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAGGTTTTGTTCTTTGAATTAAAAACT
TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTTTAC
GAGTTTTTTCATATCTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT
GAACATTCCATTCTCGAGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAGTT
TTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCC
GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGATGATCCA
TTCCTTCGAGCAACTTTCTTAACATTCCATGCTCGAAAAATCGCATCATTTGGTCTAAATAGTTT
GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAACTTATTTACGTGAGAATTGTTTCTC
Found at i:2791 original size:216 final size:215
Alignment explanation
Indices: 1940--7677 Score: 5755
Period size: 216 Copynumber: 26.7 Consensus size: 215
1930 NNNNNNNNNN
* * * * *
1940 ATCGCATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTTGTCTTTAAATTTAAAAC
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGGTCTTTGAA-TTAAAAC
* * * *
2004 TTATTTACATGAGAATTGTTCCTCTCTCTTT-GTTCTTGGATGAACTTCTAAACTTTTCAAACTT
65 TTATTTACGTGAGAATTGTT--TCTCT-TTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTT
* * * * ** *
2068 TTACGAGCTCTTCTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGGAATT
127 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* *
2133 TT-TTAACATTCCATTCTCGAGAA
192 TTCTGAACATTCCATGCTCGAGAA
* * * * ** * * * **
2156 TTCGCATCATTTAGTCTAAATAGTTTTTAATTTTGTAAACGAGTTTTGATCATTAAAACAAGAAC
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGGTCTTTGAATTAA-AAC
* * * * * * * *
2221 ATATTTTCCTGAGGATT-TTT-TC--TTGGCTGTTGGACGAACTTCTGCACTTTTCAAACTTTTA
65 TTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTA
** * *
2282 CGAGTTCTTTTATAACTT-GGTTCCTTGCAGTATTCAAGACGATCCATTCCTTCAAGTAATTTTC
130 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC
*
2346 TGAACATTCCATGCTCGGGAA
195 TGAACATTCCATGCTCGAGAA
* * * * *
2367 ATCGCATTATTTGGTCTAAATAGTTTGTCATTGTGTAAAAAACTTTTGGTCATTGANNNNNNNNN
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGGTCTTTGA--------A
***************************************** *
2432 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGACGAACTTCCGAACTTGTCAA
58 TTAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCTGAACTTGTCAA
* * * * * *
2497 ACTTTTACGAGTTCTTTTATAATTTCAGTTCCATAAAGCATTCAAGACGATCCATTCCTTTGAGG
123 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
*
2562 AATTTT-TCGAACATTCCATGCTCGAAAA
188 AATTTTCT-GAACATTCCATGCTCGAGAA
* * **
2590 ATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCACTGAATTAAATAC
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGGTCTTTGAATTAAA-AC
* * *
2655 TTATTTACCTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCTGAACTTATCAAATTTTTA
65 TTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTA
* * * * *
2720 CGAGTTCTTTTATAATTTCAGTTCCATAAAGCATTCAAGACGATCCATTCCTTCGACCAATTTTC
130 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC
* *
2785 CGAACATTCCATGCTCGGGAA
195 TGAACATTCCATGCTCGAGAA
* * * * * *
2806 ATCGCATCATTTGGTCTAAATATTTTGTCATTTTGTTAAAAGGTTTCGTTGTTTGAATTAAAAGC
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGGTCTTTGAATTAAAA-C
* * * *
2871 TTATTTACGTGATAATTGTTTCTCTCTTGGTTCGTGGACGAACTT-TCGAACTAGTCAAACTTTT
65 TTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTT
* *
2935 ACGAGTTCTTTCATATCTTCGGTTCCTTAAAGTATTCAA-ACGATCCATTCCTTCGAGCAATTTT
129 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * *
2999 CTGAACATTCAATTCTTGAGAA
194 CTGAACATTCCATGCTCGAGAA
* * * * * *
3021 ATGGCAGCATTTGGTCTAAAGAGTTTGTCATTTT-AAAAACAAGTTTTGTTCTTTGAATCAAAAA
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAA-AAGTTTTGGTCTTTGAAT-TAAAA
* * *
3085 CTTATTTACGTGAGAATTGTTTCGC--TTGGTTCTTGGACAAACTTCCGAACTTGTCAAACTTTT
64 CTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTT
* * * * * * *
3148 ACAAGTTCTTTTATAACTTCGATTCCTTACAGTATTCAAGACAATACATTCCTTCTAGCAACTTT
129 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * *
3213 CTTAACATTCTATGCTCGAAAA
194 CTGAACATTCCATGCTCGAGAA
* * * * * * *
3235 ATCACATCGTTT-TTCTAAATTGTATGTCATTTTGTGAAACAAGTTTT-GTCTTTAAATTAAAAA
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAAAAAGTTTTGGTCTTTGAATT-AAAA
* * ** * *
3298 CTTATTTATGTGAGAATTGTTTCTCTCTCTTTGTTCTTGGATAAACTTCTAAACTTTTCAAACTT
64 CTTATTTACGTGAGAATTGTTTCTCT-T-TTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTT
* * * *
3363 TTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGTGGAATT
127 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
3428 TT-TCGAACATTCCATGCTCGAGAA
192 TTCT-GAACATTCCATGCTCGAGAA
* * * * * * *
3452 AGCACATCATTTGGTCTAAATAGTTTGTCATTTTGTTAAAAGGTTTCGTTGTTTGAATTAAAAGC
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGGTCTTTGAATTAAAA-C
* * * * *
3517 TTATTTATGTGAGAATTGTTTCTCTCTAGGTTCTTGGACGAACTT-TCGAAGTAGTCAAACTTTT
65 TTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTT
* * * * *
3581 ACGAGTTCTATCATATCTTCGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAGTAATTTT
129 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * *
3646 CTAAACATTCAATTCTTGAGAA
194 CTGAACATTCCATGCTCGAGAA
* * * * *
3668 ATGGCAGCATTTGGTCTAAAGAGTTTGTCATTTT-AAAAACAAGTTTTGGTCTTTGAATCAGAAA
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAA-AAGTTTTGGTCTTTGAATTA-AAA
* * * *
3732 CTTATTTACGTCAGAATTGTTTCGC--TTGGTTCTTGGACAAACTTCCGAACTTGTCAAACTTTT
64 CTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTT
* * * * *
3795 ACGAGTTCTTTTATAACTTCAGTTCCTTACAGTATTCAAGACGATACAATT-CTTCCAGCAACTT
129 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT-CCATTCCTTCGAGCAATTT
* * * *
3859 TCTTAACTTTCTATGCTCGAAAA
193 TCTGAACATTCCATGCTCGAGAA
* * * *
3882 AT-GACATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTTTT-GTCTTTAAATTATAAA
1 ATCG-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGGTCTTTGAATTA-AAA
* * ** * * *
3944 CTTATTTACATGAGAATTGTTTCTCTCTCTTTGTTCTTGGTTGAACTTCTAAACTTTTTAAACTT
64 CTTATTTACGTGAGAATTGTTTCTCT-T-TTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTT
* * *
4009 TTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGGAATT
127 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* *
4074 TTCT-AACATTCCATTCTCGAGAT
192 TTCTGAACATTCCATGCTCGAGAA
** * * ** ** * * **
4097 A-CGCATCATTTATTCTAAATAGTTTTTAATTTTGTAAACGAGTTTTTATCATTAAAACAAGAAC
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGGTCTTTGAATTAA-AAC
* * * * * * * *
4161 ATATTTTCCTGAGGATT-TTT-TC--TTGGCTGTTGGACGAACTTCTGAACTTTTCAAACATTTA
65 TTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTA
** * *
4222 CGAGTTCTTTTATAACTT-GGTTCCTTGCAGTATTCAAGACGATCCATTCCATT-AAGAAATTTT
130 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGCAATTTT
*
4285 CTGAACATTCCATGCTCGGGAA
194 CTGAACATTCCATGCTCGAGAA
* * *
4307 ATCGCATCATTTGGTCTAAATAGTTTGTCATTGTGTAAAAAACTTTTGGTCATTGAATTAAATAC
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGGTCTTTGAATTAAA-AC
* * *
4372 TTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCTAAACTTATCAAATTTTTA
65 TTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTA
* * * * * *
4437 CGAGTTCTTTTATAATTTCAGTT-TTGTCAAGCATTCAAGATGATCCATTCCTTCGAGCAATTTT
130 CGAGTTCTTTTATAACTTCGGTTCCT-TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* *
4501 -TCGAACTTTCCATGCTCGGGAA
194 CT-GAACATTCCATGCTCGAGAA
* * * * *
4523 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTTAAAAGGTTTCGTTGTTTGAATTAAAAGC
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGGTCTTTGAATTAAAA-C
* * *
4588 TTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACGAACTT-TCGAACTAGTCAAACTTTT
65 TTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTT
* *
4652 ACGAGTTCTTTCATATCTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
129 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * *
4717 TTGGACATTCAATTCTTGAGAA
194 CTGAACATTCCATGCTCGAGAA
* * * *
4739 ATGGCAGCATTTGGTCTAAAGAGTTTGTC-TTTT-TAAAACCAAGTTTTGGTCTTTGAATCAAAA
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAA--AAGTTTTGGTCTTTGAAT-TAAA
* * *
4802 ACTTATTTACGTGAGAATTGTTTCGC--TTGATTCTTGGACAAACTT-TCGAACTTGTCAAACTT
63 ACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTT
** * * * *
4864 TTACGAGTTCTTTTATAACTTCAATTCCTTACAGTAATCAAGACGATACATTCCTTCGAGCAACT
127 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* * * *
4929 TTCTTAACATTCTAAGCTCGAAAA
192 TTCTGAACATTCCATGCTCGAGAA
* * * *
4953 ATCGCATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTTTT-GTCTTTAAATTAAAAAC
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGGTCTTTGAATT-AAAAC
* * ** * *
5016 TTATTTACGTGAGAATTATTTCTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTTTCAAACCTT
65 TTATTTACGTGAGAATTGTTTCTCT-T-TTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTT
* * ** **
5081 TACGAGTTCTTTTATAACTCCGGTTCCTTAAAGTATTCAACAATATCCATTCCTTTAAGCAA-TT
128 TACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
* * *
5145 T-TGAACATTCCATTCTCGGGTA
193 TCTGAACATTCCATGCTCGAGAA
* * * * * * *
5167 ATCGCATCATTTAGTCGAAATAGTTTTTCGTTTTGTAAACAAGTTTTTGGTCTTTAAAGCTAAAA
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAG-TTTTGGTCTTTGAA-TTAAAA
* * * * * * * *
5232 CTTATTAACGTGAGAATTGTTTC-C-CTTGGCTGTTGGATGAACTTTTGAACTTTTTAAACTTTT
64 CTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTT
* * * *
5295 ACGAGTTCTTTTATAACTT-GGTTCCCTACAA-TATTCAACATGATCCATTCCTTTCGAGCTATT
129 ACGAGTTCTTTTATAACTTCGGTTCCTTA-AAGTATTCAAGACGATCCATTCC-TTCGAGCAATT
* *
5358 TTCTGACCATTCCATGCTCGAAAA
192 TTCTGAACATTCCATGCTCGAGAA
* * * * * * *
5382 ATCGCATTATTTTGTCTAAATAGTTTGTCATTTTCTGAACAACTTTTGGTCTTCGAATTAAATAC
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGGTCTTTGAATTAAA-AC
* *
5447 TTATTTACGCGAGAATTGTTTCTCTTTTAGTTCTTGGACGAACTT-TCGAACTTGTCAAACTTTT
65 TTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTT
* * * ** * * *
5511 ACAAGTTCTTTTACAATTTAAGTTCCATAAAGCATTCAAGACGATCCATTCATTCGAGCAATTTT
129 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * *
5576 TTGAACATTCCGTGCTCGAAAA
194 CTGAACATTCCATGCTCGAGAA
* * * *
5598 ATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAGGTTTTGTTGTTTGAATTAAAAAC
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGGTCTTTGAATT-AAAAC
* * *
5663 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAACTTTTA
65 TTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTA
* * * *
5728 CGAATT-TTTTCATATCTCCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTT
130 CGAGTTCTTTT-ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * *
5792 CTAAACGTTCGATTCTAGAGAA
194 CTGAACATTCCATGCTCGAGAA
* * * *
5814 ATAGCAGCATTTGGTCTAAAGAGTTTGTCATTTTG-AAAACAAGTTTTGGTCTTTGAATCAGAAA
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAA-AAGTTTTGGTCTTTGAATTA-AAA
5878 CTTATTTACGTGAGAATTGTTTCTC--TTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTT
64 CTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTT
* * * *
5941 ACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACGATACATTCCTTCTAGCAACTTT
129 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * *
6006 CTTAACATTCTATGCTCGAAAA
194 CTGAACATTCCATGCTCGAGAA
* * * * * *
6028 ATCACATCATTT-TTGTAAATTGTATGTCATTTTGTAAAACAAGTTTT-GTCTTTAAATTAAAAA
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAA-AAGTTTTGGTCTTTGAATT-AAAA
* * * * *
6091 CTTATTTACGTGAGAATTATTTCTCTCTCTTTGTTCTTGGATGAACTTCTAAACTTTTCAAACTT
64 CTTATTTACGTGAGAATTGTTTCTCT-T-TTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTT
* * *
6156 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAATTATTCAAGACGATCCATTCCTTTGAGGAATT
127 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
*
6221 TT-TCGAACATTCCATGCTCGGGAA
192 TTCT-GAACATTCCATGCTCGAGAA
* * * * * * *
6245 ATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTTAAAAGGTTTCGTTGTTTGAATTAGAAGC
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGGTCTTTGAATTA-AAAC
* * * * *
6310 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCTGGATGAACTTCCGAACTAGTCAAACTTTTA
65 TTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTA
* * * *
6375 CGAGTTTTTTTATATCTTCGGTTCCTTAAAGTATTCAAGATGATCCAATCCTTCGAGCAATTTTC
130 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC
* * * *
6440 TGAACGTTCGATTCTAGAGAA
195 TGAACATTCCATGCTCGAGAA
* * * * *
6461 ATAGCAGCATTTGGTCTAAAGAGATTGTCATTTTG-AAAACAAGTTTTGGTCTTTGAATCAGAAA
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAA-AAGTTTTGGTCTTTGAATTA-AAA
*
6525 CTTATTTACGTGAGAATTGTTTCTC--TTGGTTCTTGGACGAAATTCTGAACTTGTCAAACTTTT
64 CTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTT
* * * * * *
6588 ACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACAATACATTCCTTCTATCAACTTT
129 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * *
6653 CTTAACATTCTATGCTCGAAAA
194 CTGAACATTCCATGCTCGAGAA
* * * * *
6675 ATCCCATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTTTT-GTCTTTAAATTAAAAAC
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGGTCTTTGAATT-AAAAC
* * ** * *
6738 TTATTTACGTGAGAATTATTTCTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTTTCAAACCTT
65 TTATTTACGTGAGAATTGTTTCTCT-T-TTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTT
* * *
6803 TATGAGTTCTTTTATAACTCCGGTTCCTTAAAGTATTCAACAAC-ATCCATTCCTTTC-AGCAA-
128 TACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA-GACGATCCATTCC-TTCGAGCAAT
* * *
6865 TTT-TGAACATTCCATTCTCGGGTA
191 TTTCTGAACATTCCATGCTCGAGAA
* * * * * **
6889 ATCACATCATTTAG--TAAATAGTTTTTCATTTTGTAAACAAGTTTTTGGTCTTTAAAACGAAAA
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAG-TTTTGGTCTTT-GAATTAAAA
* * * * * *
6952 CTTATTAACGTGAGAATTGTTTCTC--TTGGCTGTTGGATGAACTTCTGAACTTTTTAAACTTTT
64 CTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTT
* * * *
7015 ACGAGATCTTTTATAACTT-GGCTGCC-TACAA-TATTCAAGATGATCCATTCCTTCGAGCTATT
129 ACGAGTTCTTTTATAACTTCGG-TTCCTTA-AAGTATTCAAGACGATCCATTCCTTCGAGCAATT
*
7077 TTCTAAACATTCCATGCTCG-GAAA
192 TTCTGAACATTCCATGCTCGAG-AA
* * * * * * *
7101 ATCGTATAATTTTGTCTAAATAGTTTGTCATTTTGTGAACAACTTTTGGTCTTTGTATTAAATAC
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGGTCTTTGAATTAAA-AC
* * *
7166 TTATTTACGCGAGAATTGTTTCTCTTTTAGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTA
65 TTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTA
* * * * * * *
7231 CGAGTTCTTTTATAATTTCAGTTCCATAAAGCATTCAAGACGATCCATTGCTTCGAGAAATTTTT
130 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC
*
7296 TGAACATTCCATGCTCGAAAA
195 TGAACATTCCATGCTCGAGAA
* * *
7317 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAGGTTTTGTTGTTTGAATTAAAAAC
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGGTCTTTGAATT-AAAAC
* * * *
7382 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTAGTCAAACTTTTA
65 TTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTA
* *
7447 CGAGTT-TTTTCATATCTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTT
130 CGAGTTCTTTT-ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * *
7511 CTGAACGTTCGATTCTAGAGAA
194 CTGAACATTCCATGCTCGAGAA
* * * *
7533 ATAGCAGCATTTGGTCTAAAGAGTTTGTCATTTTG-AAAACAAGTTTTGGTCTTTGAATCATAAA
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAA-AAGTTTTGGTCTTTGAATTA-AAA
*
7597 CTTATTTACGTGAGAATTGTTTCTC--TTGGTTCTTGGACGAAATTCTGAACTTGTCAAACTTTT
64 CTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTT
7660 ACGAGTTCTTTTATAACT
129 ACGAGTTCTTTTATAACT
Statistics
Matches: 4545, Mismatches: 831, Indels: 294
0.80 0.15 0.05
Matches are distributed among these distances:
209 43 0.01
210 135 0.03
211 226 0.05
212 166 0.04
213 367 0.08
214 707 0.16
215 439 0.10
216 1812 0.40
217 384 0.08
218 112 0.02
222 46 0.01
223 108 0.02
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (215 bp):
ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGGTCTTTGAATTAAAACT
TATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTAC
GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT
GAACATTCCATGCTCGAGAA
Found at i:3831 original size:430 final size:429
Alignment explanation
Indices: 1940--7677 Score: 5785
Period size: 430 Copynumber: 13.3 Consensus size: 429
1930 NNNNNNNNNN
* * * *
1940 ATCGCATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTTGTCTTTAAATTTAAAAC
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA-TTAAAAC
* * * ** *
2004 TTATTTACATGAGAATTGTTCCTCTCTCTTTGTTCTTGGATGAACTTCTAAACTTTTCAAACTTT
65 TTATTTACGTGAGAATTG-T--TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTT
* * * * ** *
2069 TACGAGCTCTTCTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTAAGGAATTT
127 TACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
* * * * * * **
2134 TT-TAACATTCCATTCTCGAGAATTCGCATCATTTAGTCTAAATAGTTTTTAATTTTGTAAACGA
192 TTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAA
* * * ** * * * * * *
2198 GTTTTGATCATTAAAACAAGAACATATTTTCCTGAGGA-T-TTT-T-TCTTGGCTGTTGGACGAA
257 GTTTTGGTCTTTGAATTAA-AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
* * **
2259 CTTCTGCACTTTTCAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTGCAGTATTCAAGACG
321 CTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * *
2323 ATCCATTCCTTCAAGTAATTTTCTGAACATTCCATGCTCGGGAA
386 ATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAA
* * * * *
2367 ATCGCATTATTTGGTCTAAATAGTTTGTCATTGTGTAAAAAACTTTTGGTCATTGANNNNNNNNN
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGA---------
*****************************************
2432 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGACGAACTTCCGAACTTGTCAA
57 ATTAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * * * *
2497 ACTTTTACGAGTTCTTTTATAATTTCAGTTCCATAAAGCATTCAAGACGATCCATTCCTTTGAGG
122 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* *
2562 AATTTTTCGAACATTCCATGCTCGAAAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTA
187 AATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* ** * *
2627 AAAAACTTTTGGTCACTGAATTAAATACTTATTTACCTGAGAATTGTTTCTCTTTTGGTTCTTGG
252 AAAAAGTTTTGGTCTTTGAATTAAA-ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * * * *
2692 ACGAACTTCTGAACTTATCAAATTTTTACGAGTTCTTTTATAATTTCAGTTCCATAAAGCATTCA
316 ACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA
* * *
2757 AGACGATCCATTCCTTCGACCAATTTTCCGAACATTCCATGCTCGGGAA
381 AGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAA
* * * * *
2806 ATCGCATCATTTGGTCTAAATATTTTGTCATTTTGTTAAA-AGGTTTCGTTGTTTGAATTAAAAG
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAAGTTTTGGTCTTTGAATTAAAA-
* * * *
2870 CTTATTTACGTGATAATTGTTTCTCTCTTGGTTCGTGGACGAACTTTCGAACTAGTCAAACTTTT
64 CTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTT
* *
2935 ACGAGTTCTTTCATATCTTCGGTTCCTTAAAGTATTCAA-ACGATCCATTCCTTCGAGCAA-TTT
128 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * * * *
2998 TCTGAACATTCAATTCTTGAGAAATGGCAGCATTTGGTCTAAAGAGTTTGTCATTTT-AAAAACA
193 TC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAA-A
* * * *
3062 AGTTTTGTTCTTTGAATCAAAAACTTATTTACGTGAGAATTG-TT-TCGCTTGGTTCTTGGACAA
256 AGTTTTGGTCTTTGAAT-TAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* * * *
3125 ACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGATTCCTTACAGTATTCAAGAC
320 ACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAC
* * * * * * *
3190 AATACATTCCTTCTAGCAACTTTCTTAACATTCTATGCTCGAAAA
385 GATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAA
* * * * * *
3235 ATCACATCGTTT-TTCTAAATTGTATGTCATTTTGTGAAACAAGTTTT-GTCTTTAAATTAAAAA
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAGTTTTGGTCTTTGAATT-AAAA
* * ** ** *
3298 CTTATTTATGTGAGAATTGTTTCTCTCTCTTTGTTCTTGGATAAACTTCTAAACTTTTCAAACTT
64 CTTATTTACGTGAGAATTG--T-TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTT
* * * *
3363 TTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGTGGAATT
126 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* * *
3428 TTTCGAACATTCCATGCTCGAGAAAGCACATCATTTGGTCTAAATAGTTTGTCATTTTGTTAAAA
191 TTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAA
* * * * * *
3493 GGTTTCGTTGTTTGAATTAAAAGCTTATTTATGTGAGAATTGTTTCTCTCTAGGTTCTTGGACGA
256 AGTTTTGGTCTTTGAATTAAAA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* * * * *
3558 ACTT-TCGAAGTAGTCAAACTTTTACGAGTTCTATCATATCTTCGGTTCCTTAAAGTATTCAAGA
320 ACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * * * *
3622 CGATCCATTTCTTCGAGTAATTTTCTAAACATTCAATTCTTGAGAA
384 CGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAA
* * * ** *
3668 ATGGCAGCATTTGGTCTAAAGAGTTTGTCATTTTAAAAACAAGTTTTGGTCTTTGAATCAGAAAC
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA-AAAC
* * *
3733 TTATTTACGTCAGAATTGTT-TCGCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAACTTTTAC
65 TTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * *
3797 GAGTTCTTTTATAACTTCAGTTCCTTACAGTATTCAAGACGATACAATT-CTTCCAGCAACTTTC
130 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT-CCATTCCTTCGAGCAA-TTT-
* * * * * *
3861 TT--AACTTTCTATGCTCGAAAAAT-GACATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACA
192 TTCGAACATTCCATGCTCGAGAAATCG-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAA
* * * **
3922 AGTTTT-GTCTTTAAATTATAAACTTATTTACATGAGAATTGTTTCTCTCTCTTTGTTCTTGGTT
256 AGTTTTGGTCTTTGAATTA-AAACTTATTTACGTGAGAATTG-TT-TCTCTCTTGGTTCTTGGAC
* * * *
3986 GAACTTCTAAACTTTTTAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAG
318 GAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAG
* * * *
4051 ACGATCCATTCCTTTGAGGAATTTTCT-AACATTCCATTCTCGAGAT
383 ACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAA
** * * * ** * * **
4097 A-CGCATCATTTATTCTAAATAGTTTTTAATTTTGTAAACGAGTTTTTATCATTAAAACAAGAAC
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA-AAC
* * * * * * * * *
4161 ATATTTTCCTGAGGATT-TT-T-TCTTGGCTGTTGGACGAACTTCTGAACTTTTCAAACATTTAC
65 TTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
** * *
4223 GAGTTCTTTTATAACTT-GGTTCCTTGCAGTATTCAAGACGATCCATTCCATT-AAG-AAATTTT
130 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGCAATTTTT
* * *
4285 CTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTGTGTAAAAAAC
194 C-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAG
* *
4350 TTTTGGTCATTGAATTAAATACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGACGAAC
258 TTTTGGTCTTTGAATTAAA-ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * * * * * * *
4415 TTCTAAACTTATCAAATTTTTACGAGTTCTTTTATAATTTCAGTT-TTGTCAAGCATTCAAGATG
322 TTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT-TAAAGTATTCAAGACG
* *
4479 ATCCATTCCTTCGAGCAATTTT-TCGAACTTTCCATGCTCGGGAA
386 ATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCGAGAA
* * * *
4523 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTTAAA-AGGTTTCGTTGTTTGAATTAAAAG
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAAGTTTTGGTCTTTGAATTAAAA-
* *
4587 CTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAAACTTTT
64 CTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTT
* *
4652 ACGAGTTCTTTCATATCTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
128 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * * * * *
4717 TTGGACATTCAATTCTTGAGAAATGGCAGCATTTGGTCTAAAGAGTTTGTC-TTTT-TAAAACCA
193 TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAA--A
* * * *
4780 AGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTG-TT-TCGCTTGATTCTTGGACAA
256 AGTTTTGGTCTTTGAAT-TAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
** * *
4843 ACTT-TCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAATTCCTTACAGTAATCAAGA
320 ACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * * * *
4907 CGATACATTCCTTCGAGCAACTTTCTTAACATTCTAAGCTCGAAAA
384 CGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAA
* * *
4953 ATCGCATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTTTT-GTCTTTAAATTAAAAAC
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AAAAC
* * * * *
5016 TTATTTACGTGAGAATTATTTCTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTTTCAAACCTT
65 TTATTTACGTGAGAA-T-TGT-TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTT
* * ** **
5081 TACGAGTTCTTTTATAACTCCGGTTCCTTAAAGTATTCAACAATATCCATTCCTTTAAGCAA-TT
127 TACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
* * * * * * * *
5145 TT-GAACATTCCATTCTCGGGTAATCGCATCATTTAGTCGAAATAGTTTTTCGTTTTGTAAACAA
192 TTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAA
* * * * * *
5209 GTTTTTGGTCTTTAAAGCTAAAACTTATTAACGTGAGAATTGTTTC-C-CTTGGCTGTTGGATGA
257 G-TTTTGGTCTTTGAA-TTAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* * * * *
5272 ACTTTTGAACTTTTTAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCCTACAA-TATTCAACA
320 ACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AAGTATTCAAGA
* * * *
5335 TGATCCATTCCTTTCGAGCTATTTTCTGACCATTCCATGCTCGAAAA
384 CGATCCATTCC-TTCGAGCAATTTTCTGAACATTCCATGCTCGAGAA
* * * * * *
5382 ATCGCATTATTTTGTCTAAATAGTTTGTCATTTTCTGAACAACTTTTGGTCTTCGAATTAAATAC
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAA-AC
* * * *
5447 TTATTTACGCGAGAATTGTTTCTCTTTTAGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTA
65 TTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTA
* * * ** * * *
5512 CAAGTTCTTTTACAATTTAAGTTCCATAAAGCATTCAAGACGATCCATTCATTCGAGCAATTTTT
129 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT
* * * * *
5577 TGAACATTCCGTGCTCGAAAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAGGT
194 CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGT
* *
5642 TTTGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
259 TTTGGTCTTTGAATT-AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * *
5707 TCCGAACTAGTCAAACTTTTACGAATT-TTTTCATATCTCCGGTTCCTTAAAGTATTCAAGATGA
323 TCTGAACTTGTCAAACTTTTACGAGTTCTTTT-ATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* * * * *
5771 TCCATTCCTTCGAGCAATTTTCTAAACGTTCGATTCTAGAGAA
387 TCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAA
* * * * *
5814 ATAGCAGCATTTGGTCTAAAGAGTTTGTCATTTTGAAAACAAGTTTTGGTCTTTGAATCAGAAAC
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA-AAAC
*
5879 TTATTTACGTGAGAATTGTT-TCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTAC
65 TTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * *
5943 GAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGACGATACATTCCTTCTAGCAACTTTCT
130 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTT-T
* * * * * * *
6008 T--AACATTCTATGCTCGAAAAATCACATCATTT-TTGTAAATTGTATGTCATTTTGTAAAACAA
193 TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAA-AA
* * * *
6070 GTTTT-GTCTTTAAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTCTTTGTTCTTGGATG
257 GTTTTGGTCTTTGAATT-AAAACTTATTTACGTGAGAATT-GTT-TCTCTCTTGGTTCTTGGACG
* * *
6134 AACTTCTAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAATTATTCAAGA
319 AACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * *
6199 CGATCCATTCCTTTGAGGAATTTT-TCGAACATTCCATGCTCGGGAA
384 CGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCGAGAA
* * * * * *
6245 ATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTTAAA-AGGTTTCGTTGTTTGAATTAGAAG
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAAGTTTTGGTCTTTGAATTA-AAA
* * *
6309 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCCTGGATGAACTTCCGAACTAGTCAAACTTTT
64 CTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTT
* * * *
6374 ACGAGTTTTTTTATATCTTCGGTTCCTTAAAGTATTCAAGATGATCCAATCCTTCGAGCAA-TTT
128 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * * * * *
6438 TCTGAACGTTCGATTCTAGAGAAATAGCAGCATTTGGTCTAAAGAGATTGTCATTTTG-AAAACA
193 TC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAA-A
*
6502 AGTTTTGGTCTTTGAATCAGAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGA
256 AGTTTTGGTCTTTGAATTA-AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* *
6565 AATTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACAGTATTCAAGAC
320 ACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAC
* * * * * * * *
6630 AATACATTCCTTCTATCAACTTTCTTAACATTCTATGCTCGAAAA
385 GATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAA
* * * *
6675 ATCCCATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAGTTTT-GTCTTTAAATTAAAAAC
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AAAAC
* * * * *
6738 TTATTTACGTGAGAATTATTTCTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTTTCAAACCTT
65 TTATTTACGTGAGAA-T-TGT-TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTT
* * *
6803 TATGAGTTCTTTTATAACTCCGGTTCCTTAAAGTATTCAACAAC-ATCCATTCCTTTC-AGCAA-
127 TACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA-GACGATCCATTCC-TTCGAGCAAT
* * * * * * *
6865 TTTT-GAACATTCCATTCTCGGGTAATCACATCATTTAG--TAAATAGTTTTTCATTTTGTAAAC
190 TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAA
* ** * * * *
6927 AAGTTTTTGGTCTTTAAAACGAAAACTTATTAACGTGAGAATTG-TT-TCTCTTGGCTGTTGGAT
255 AAG-TTTTGGTCTTT-GAATTAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
* * * *
6990 GAACTTCTGAACTTTTTAAACTTTTACGAGATCTTTTATAACTT-GGCTGCC-TACAA-TATTCA
318 GAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGG-TTCCTTA-AAGTATTCA
* * *
7052 AGATGATCCATTCCTTCGAGCTATTTTCTAAACATTCCATGCTCG-GAAA
381 AGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAG-AA
* * * * * *
7101 ATCGTATAATTTTGTCTAAATAGTTTGTCATTTTGTGAACAACTTTTGGTCTTTGTATTAAATAC
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAA-AC
* * *
7166 TTATTTACGCGAGAATTGTTTCTCTTTTAGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTA
65 TTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTA
* * * * * *
7231 CGAGTTCTTTTATAATTTCAGTTCCATAAAGCATTCAAGACGATCCATTGCTTCGAGAAATTTTT
129 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT
* * *
7296 TGAACATTCCATGCTCGAAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAGGT
194 CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGT
* * *
7361 TTTGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACA
259 TTTGGTCTTTGAATT-AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * *
7426 TCCGAACTAGTCAAACTTTTACGAGTT-TTTTCATATCTTCGGTTCCTTAAAGTATTCAAGATGA
323 TCTGAACTTGTCAAACTTTTACGAGTTCTTTT-ATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* * * *
7490 TCCATTCCTTCGAGCAATTTTCTGAACGTTCGATTCTAGAGAA
387 TCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAA
* * * * *
7533 ATAGCAGCATTTGGTCTAAAGAGTTTGTCATTTTGAAAACAAGTTTTGGTCTTTGAATCATAAAC
1 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA-AAAC
* *
7598 TTATTTACGTGAGAATTGTT-TCTCTTGGTTCTTGGACGAAATTCTGAACTTGTCAAACTTTTAC
65 TTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
7662 GAGTTCTTTTATAACT
130 GAGTTCTTTTATAACT
Statistics
Matches: 4329, Mismatches: 831, Indels: 299
0.79 0.15 0.05
Matches are distributed among these distances:
422 2 0.00
423 2 0.00
424 8 0.00
425 149 0.03
426 267 0.06
427 233 0.05
428 373 0.09
429 544 0.13
430 1002 0.23
431 583 0.13
432 456 0.11
433 378 0.09
434 171 0.04
435 1 0.00
436 3 0.00
437 1 0.00
438 52 0.01
439 100 0.02
440 4 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (429 bp):
ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAACT
TATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
AACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTT
TGGTCTTTGAATTAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT
GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
TTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAA
Found at i:6933 original size:20 final size:19
Alignment explanation
Indices: 6895--6934 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
6885 GGTAATCACA
*
6895 TCATTTAGTAAATAGTTTT
1 TCATTTAGTAAAAAGTTTT
*
6914 TCATTTTGTAAACAAGTTTT
1 TCATTTAGTAAA-AAGTTTT
6934 T
1 T
6935 GGTCTTTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.30, C:0.07, G:0.10, T:0.53
Consensus pattern (19 bp):
TCATTTAGTAAAAAGTTTT
Done.