genome.fa.s14052.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014052.1 Kokia drynarioides strain JFW-HI SEQ_129083, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99011

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
828--957	29	4.5	28	70	14	102	34	30	3	31	1.76
1822--1854	16	2.1	16	88	5	50	33	9	3	54	1.47
5319--5764	195	2.3	194	84	5	571	28	18	25	26	1.98
8181--8238	22	2.6	22	88	0	89	36	15	13	34	1.87
10008--10046	18	2.0	20	85	9	55	41	15	0	43	1.46
10501--10551	24	2.1	24	82	7	59	9	9	7	72	1.28
13041--13083	21	2.1	22	84	16	58	46	4	2	46	1.36
19028--19216	43	4.4	42	81	10	222	33	11	26	27	1.91
20678--20747	34	2.1	34	100	0	140	50	14	24	11	1.75
34652--34738	25	3.4	25	76	4	86	26	19	21	32	1.97
35434--35493	24	2.5	24	94	0	102	25	28	28	18	1.98
40384--40416	11	3.0	11	90	0	57	33	0	3	63	1.10
46921--46967	21	2.3	21	78	10	53	34	36	6	23	1.80
47041--47106	7	10.5	6	78	12	62	48	36	0	15	1.45
47025--47106	19	4.3	19	86	12	98	47	35	0	17	1.48
47041--47105	13	5.1	13	75	17	57	49	35	0	15	1.45
48624--48798	77	2.2	80	86	8	243	57	12	12	17	1.66
50975--51039	30	2.2	30	85	0	85	26	3	12	58	1.49
51498--51543	24	1.9	24	83	16	60	41	10	6	41	1.66
51496--51552	25	2.3	26	81	9	73	49	8	5	36	1.57
56377--56504	40	3.3	39	68	20	115	21	25	18	34	1.96
66625--66766	23	6.1	23	72	11	85	11	27	20	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66700--66797	25	4.0	24	76	12	92	15	27	18	38	1.91
66690--66797	48	2.3	48	83	4	130	13	28	18	38	1.89
69743--69789	13	3.6	13	80	11	60	46	0	17	36	1.48
69745--69800	26	2.1	26	86	3	76	44	0	17	37	1.49
72485--72520	10	3.5	10	88	3	54	0	19	0	80	0.71
74727--74919	98	2.0	96	84	7	248	38	14	18	27	1.90
76302--76362	29	2.0	32	81	9	74	34	3	0	62	1.12
76328--76569	121	2.0	121	90	0	376	43	7	9	39	1.64
77107--77198	23	4.0	22	73	16	69	50	7	2	40	1.43
77117--77160	24	1.9	22	86	9	61	52	6	2	38	1.41
77145--77234	17	4.9	17	70	15	63	54	6	1	37	1.34
77708--77821	49	2.3	49	86	0	147	11	29	20	38	1.87
77798--78508	50	14.3	50	70	10	347	17	32	15	34	1.91
77906--78484	149	3.9	149	86	3	747	17	32	14	34	1.90
78041--78509	99	4.7	100	74	8	404	18	33	14	34	1.91
86768--87015	29	8.5	30	77	10	167	35	4	25	35	1.75
86796--87022	58	3.9	59	78	8	223	36	3	24	35	1.73
86849--87028	87	2.0	89	83	6	224	36	2	25	35	1.70
86820--87022	29	6.9	30	78	11	174	36	2	24	35	1.71
88051--88111	29	2.0	32	81	9	74	34	3	0	62	1.12
88893--88956	17	3.8	17	87	0	92	57	4	0	37	1.19
88852--88918	24	2.8	24	73	10	66	49	5	1	43	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88897--88950	28	1.9	28	85	7	74	59	5	0	35	1.21
98033--98108	30	2.5	31	78	8	84	48	6	1	43	1.37

Tables:   1

The End!