genome.fa.s14056.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014056.1 Kokia drynarioides strain JFW-HI SEQ_129087, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  156565

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1289--1335	23	2.0	23	83	4	58	48	6	17	27	1.71
6680--6736	12	4.7	13	75	14	59	15	35	5	43	1.70
6680--6735	24	2.3	24	96	0	103	16	35	3	44	1.65
12098--12138	21	2.0	20	85	4	55	70	4	0	24	1.06
15824--15883	28	2.1	28	82	11	70	45	8	11	35	1.71
16721--16773	20	2.8	18	88	8	79	22	7	15	54	1.65
16748--16793	24	1.9	24	95	0	83	26	8	15	50	1.73
21286--21348	21	3.0	21	97	0	117	36	9	15	38	1.81
21531--21573	19	2.2	20	95	4	79	27	13	4	53	1.60
22465--22527	31	2.0	31	96	0	117	31	12	12	42	1.81
23887--23927	21	2.0	21	90	0	64	36	7	14	41	1.74
29561--29629	24	2.9	24	91	0	102	55	8	10	26	1.62
29549--29630	24	3.4	24	82	0	83	50	10	12	26	1.73
30130--30265	64	2.1	64	98	0	263	34	16	15	33	1.90
31576--31664	24	3.7	24	83	0	79	52	6	12	28	1.64
34880--34915	17	2.1	17	94	0	63	36	5	2	55	1.38
35406--35434	13	2.1	14	93	6	51	24	6	34	34	1.82
39509--39741	86	2.7	86	84	2	306	36	9	22	31	1.85
39509--39701	43	4.5	43	92	0	296	35	9	22	32	1.86
42193--42529	43	7.8	43	88	0	449	35	9	22	32	1.87
47250--47306	28	2.0	28	100	0	114	31	21	3	43	1.69
49574--49606	13	2.5	13	86	13	50	0	15	0	84	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50674--50709	12	3.2	12	85	14	51	0	38	0	61	0.96
65399--65449	25	2.0	25	96	0	93	27	27	9	35	1.88
73521--73560	18	2.2	20	86	13	59	67	0	2	30	1.04
74854--74914	30	2.0	30	96	0	113	27	6	22	42	1.78
77477--77517	21	1.9	21	85	5	55	14	34	26	24	1.94
83716--83744	11	2.6	11	100	0	58	17	10	0	72	1.11
88909--88960	24	2.1	26	82	7	63	17	7	17	57	1.62
90910--90984	29	2.6	29	77	6	73	42	16	20	21	1.89
90969--91036	26	2.6	26	90	0	100	38	20	22	19	1.94
91069--91263	29	6.7	29	75	8	182	45	24	9	20	1.81
93468--93518	21	2.4	21	83	3	57	9	21	1	66	1.31
93502--93535	18	1.9	18	88	5	52	8	20	2	67	1.31
108226--108263	19	2.1	19	85	5	51	55	7	36	0	1.29
113768--113808	21	2.0	21	95	0	73	41	21	14	21	1.89
114626--114658	11	3.0	11	86	13	50	63	3	0	33	1.10
126737--126805	29	2.4	31	80	11	92	46	0	2	50	1.16
127994--128094	30	3.4	29	72	9	98	48	1	0	48	1.19
127994--128094	28	3.5	27	76	14	96	48	1	0	48	1.19
128016--128078	27	2.3	27	81	5	65	53	1	1	42	1.19
139955--140015	29	2.0	28	81	12	68	13	4	49	32	1.63
143272--143367	29	3.3	29	76	4	104	45	22	9	21	1.80
143259--143330	17	4.5	17	73	16	64	44	26	8	20	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143272--143389	29	4.1	29	75	4	103	44	22	10	23	1.83
146770--146811	17	2.5	17	88	0	57	40	21	14	23	1.90
146858--146904	17	3.1	17	74	25	59	38	12	17	31	1.87
146791--146902	29	3.9	29	75	1	109	41	16	13	27	1.86

Tables:   1

The End!