Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014059.1 Kokia drynarioides strain JFW-HI SEQ_129090, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1817
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30


Found at i:540 original size:45 final size:45

Alignment explanation


    Indices: 489--656  Score: 221
    Period size: 45  Copynumber: 3.7  Consensus size: 45

        479 ATCGCGATGC

                       *  *   *       **       *          
        489 CTCGTCAAACTCAGCCTGTTATCCTTCCCTAT-AGTATTGCGGTGG
          1 CTCGTCAAACTGAGGCTGATATCCTTGGCT-TGAGCATTGCGGTGG

                     *            *                      
        534 CTCGTCAAATTGAGGCTGATATTCTTGGCTTGAGCATTGCGGTGG
          1 CTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGCATTGCGGTGG

                     * *                                 
        579 CTCGTCAAATTAAGGCTGATATCCTTGGCTTGAGCATTGCGGTGG
          1 CTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGCATTGCGGTGG

                          *                  
        624 CTCGTCAAACTGAGACTGATATCCTTGGCTTGA
          1 CTCGTCAAACTGAGGCTGATATCCTTGGCTTGA

        657 TGAGCTATGC


Statistics
Matches: 109,  Mismatches: 13, Indels: 2
        0.88            0.10        0.02

Matches are distributed among these distances:
  44    1  0.01
  45  108  0.99

ACGTcount: A:0.20, C:0.23, G:0.26, T:0.32


Consensus pattern (45 bp):   
CTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGCATTGCGGTGG
Done.