genome.fa.s14062.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014062.1 Kokia drynarioides strain JFW-HI SEQ_129093, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131825

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381--536	23	6.8	23	87	7	135	12	24	25	37	1.90
438--536	45	2.2	45	81	5	110	13	24	27	35	1.92
24686--24736	19	2.7	19	84	0	57	58	3	0	37	1.16
24762--24811	17	2.9	17	88	8	75	54	2	4	40	1.31
24870--24901	2	16.0	2	100	0	64	50	0	0	50	1.00
35468--35501	3	11.3	3	100	0	68	67	0	0	32	0.91
36641--36917	29	9.7	30	70	18	139	35	29	1	33	1.68
36706--36746	20	2.0	21	85	4	57	34	29	0	36	1.58
36664--36809	79	1.8	79	86	0	211	38	28	1	31	1.66
36752--36956	59	3.5	59	78	10	165	36	30	1	31	1.69
41980--42068	6	15.3	6	68	19	55	44	2	3	49	1.31
42032--42076	24	1.9	23	90	4	72	48	0	0	51	1.00
41979--42061	17	4.9	17	82	5	96	44	2	3	49	1.32
42805--42846	15	2.8	15	82	7	50	50	0	7	42	1.30
42790--42824	18	1.9	18	88	0	52	48	0	5	45	1.26
43873--44097	30	7.7	28	76	14	181	35	29	4	30	1.77
43842--44109	89	3.0	86	80	13	253	34	30	4	30	1.78
43902--44105	59	3.4	58	87	5	291	35	29	3	30	1.76
43847--44112	29	9.0	29	75	9	234	34	30	4	30	1.79
47156--47201	24	1.9	23	86	8	65	54	6	4	34	1.46
47613--47657	22	2.1	22	87	4	65	46	4	2	46	1.35
47634--47669	19	1.9	18	88	5	54	33	2	2	61	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50037--50159	58	2.2	56	89	5	185	51	12	13	23	1.74
50120--50227	31	3.3	30	70	18	81	53	10	12	24	1.68
52806--52848	13	3.3	13	87	6	52	39	2	18	39	1.64
55632--55668	17	2.1	18	90	5	58	32	13	8	45	1.73
58230--58291	32	2.0	32	90	9	101	37	6	4	51	1.49
59203--59263	28	2.2	28	96	0	113	49	14	3	32	1.60
68396--68437	21	2.1	20	82	8	50	45	9	0	45	1.36
78004--78039	18	2.0	18	100	0	72	33	38	11	16	1.84
78470--78516	24	2.0	24	82	0	58	34	17	25	23	1.96
82722--82762	17	2.4	17	100	0	82	46	9	0	43	1.36
84444--84477	17	2.0	17	88	0	50	14	26	32	26	1.95
91620--91649	3	10.0	3	100	0	60	66	0	0	33	0.92
91970--92030	29	2.1	29	81	6	70	44	4	4	45	1.46
102244--102357	23	4.7	23	69	19	72	55	6	1	36	1.35
102233--102374	22	6.0	22	69	18	63	51	6	1	40	1.36
102247--102395	74	2.0	74	97	0	280	49	8	2	39	1.46
103458--103828	29	12.8	29	76	9	332	33	5	28	32	1.80
103457--103828	59	6.4	57	80	7	328	33	5	28	32	1.80
104879--104989	3	35.0	3	70	13	62	36	3	0	58	1.22
104903--104989	19	4.7	18	78	16	88	39	2	1	57	1.19
104888--104991	19	5.6	18	75	14	86	38	2	0	57	1.20
104960--104990	16	1.9	16	93	0	53	38	6	0	54	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105703--105773	17	4.1	17	83	1	70	49	4	1	45	1.30
105718--105764	6	8.2	6	76	9	53	53	2	0	44	1.12
105842--105872	2	15.5	2	93	0	53	54	0	0	45	0.99
110597--110621	2	12.5	2	100	0	50	48	0	0	52	1.00
116522--116563	8	5.2	8	77	11	50	33	2	0	64	1.07
116522--116562	15	2.6	16	84	7	57	34	2	0	63	1.08

Tables:   1

The End!