Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014064.1 Kokia drynarioides strain JFW-HI SEQ_129095, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 18514
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Warning! 17 characters in sequence are not A, C, G, or T
Found at i:140 original size:21 final size:20
Alignment explanation
Indices: 100--139 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
90 ATAATAAGTT
100 TTTATTTTATTTTTTAAAAA
1 TTTATTTTATTTTTTAAAAA
120 TTTATTTTATTTTTTAAAAA
1 TTTATTTTATTTTTTAAAAA
140 AACCATTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTATTTTATTTTTTAAAAA
Found at i:1115 original size:29 final size:28
Alignment explanation
Indices: 1063--1338 Score: 161
Period size: 29 Copynumber: 9.5 Consensus size: 28
1053 TAAACAGTCT
* **
1063 AAAAATTACATTTTTACCTTGAAATTCC
1 AAAAATTCCATTTTTACCCCGAAATTCC
*
1091 AAAAATTCCATTTTTGACCCCGAAAATTCT
1 AAAAATTCCATTTTT-ACCCCG-AAATTCC
* * *
1121 AAAAATTCTATTTTTACCCTTGAACTTCC
1 AAAAATTCCATTTTTACCC-CGAAATTCC
* * *
1150 AAAATTTCCATTTTTGATCCTGAAACTTCC
1 AAAAATTCCATTTTT-ACCCCGAAA-TTCC
*
1180 AAAAATTACCATTTTAACCCC-AAATGTCC
1 AAAAATT-CCATTTTTACCCCGAAAT-TCC
* * *
1209 AAAAACTCCATTTTTGACCTCGAAACTCTC
1 AAAAATTCCATTTTT-ACCCCGAAATTC-C
* *
1239 -AAAATTACC-CTTATACCCCG-AATGTCC
1 AAAAATT-CCATTTTTACCCCGAAAT-TCC
* * * *
1266 AAAAATTCCATCTTTAATCCCGAATTTTCT
1 AAAAATTCCAT-TTTTACCCCGAA-ATTCC
*
1296 AAAAATTACCA-TTTCACCCCCGAGAA-TCC
1 AAAAATT-CCATTTTTA-CCCCGA-AATTCC
1325 -AAAATTACCATTTT
1 AAAAATT-CCATTTT
1339 GCCCCCGAGT
Statistics
Matches: 192, Mismatches: 35, Indels: 41
0.72 0.13 0.15
Matches are distributed among these distances:
27 5 0.03
28 45 0.23
29 72 0.38
30 58 0.30
31 12 0.06
ACGTcount: A:0.36, C:0.26, G:0.05, T:0.34
Consensus pattern (28 bp):
AAAAATTCCATTTTTACCCCGAAATTCC
Found at i:1164 original size:59 final size:58
Alignment explanation
Indices: 1060--1309 Score: 211
Period size: 59 Copynumber: 4.3 Consensus size: 58
1050 CCCTAAACAG
1060 TCTAAAAATTACATTTTTACCTTGAAATTCCAAAAATTCCATTTTTGACCCCGAAAAT
1 TCTAAAAATTACATTTTTACCTTGAAATTCCAAAAATTCCATTTTTGACCCCGAAAAT
* * * * *
1118 TCTAAAAATT-CTATTTTTACCCTTGAACTTCCAAAATTTCCATTTTTGATCCTGAAACT
1 TCTAAAAATTAC-ATTTTTA-CCTTGAAATTCCAAAAATTCCATTTTTGACCCCGAAAAT
* * ** * * *
1177 TCCAAAAATTACCATTTTAACC-CCAAATGTCCAAAAACTCCATTTTTGACCTCG-AAAC
1 TCTAAAAATTA-CATTTTTACCTTGAAAT-TCCAAAAATTCCATTTTTGACCCCGAAAAT
* ** * ** * * * **
1235 TCTCAAAATTACCCTTATACCCCG-AATGTCCAAAAATTCCATCTTTAATCCCGAATTT
1 TCTAAAAATTACATTTTTACCTTGAAAT-TCCAAAAATTCCATTTTTGACCCCGAAAAT
1293 TCTAAAAATTACCATTT
1 TCTAAAAATTA-CATTT
1310 CACCCCCGAG
Statistics
Matches: 149, Mismatches: 35, Indels: 15
0.75 0.18 0.08
Matches are distributed among these distances:
57 31 0.21
58 43 0.29
59 68 0.46
60 6 0.04
61 1 0.01
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.35
Consensus pattern (58 bp):
TCTAAAAATTACATTTTTACCTTGAAATTCCAAAAATTCCATTTTTGACCCCGAAAAT
Found at i:2407 original size:49 final size:47
Alignment explanation
Indices: 2354--2779 Score: 260
Period size: 49 Copynumber: 8.7 Consensus size: 47
2344 CATGAAACAC
* *
2354 GAAGGGAAAGGTTTAAGTCGTAACGGCGAACCTTGTACCTCAGAAGCAT
1 GAAGGGAAAGGTTTAAGTCGCAACGGCGAACCTTGTACCAC-GAAG-AT
* * ** * *
2403 GAAGGG-AAGATTTAAG-CTACAACGATGAATCC-AGTACCACGGAGAT
1 GAAGGGAAAGGTTTAAGTC-GCAACGGCGAA-CCTTGTACCACGAAGAT
* * *
2449 ACGAAGGGAAAGGTTTAAGTCGCAACGGTGAACCTTGTACCTCAGAAGAAA
1 --GAAGGGAAAGGTTTAAGTCGCAACGGCGAACCTTGTACCAC-GAAG-AT
* * * * ** *
2500 AAAGGGAAAGATTTAAGTCGTAATGGCGAATCC-AATACCACGGAGAT
1 GAAGGGAAAGGTTTAAGTCGCAACGGCGAA-CCTTGTACCACGAAGAT
* *
2547 ACGAAGGGAAAGGTTTAAGTCGTAACGGCAAACCTTGTACCTTA-GAAGAAT
1 --GAAGGGAAAGGTTTAAGTCGCAACGGCGAACCTTGTACC--ACGAAG-AT
* * * *
2598 GAAGGGAAAGATTTAAG-CGGCAACGACGAATCC-AGTACCACGGAGAT
1 GAAGGGAAAGGTTTAAGTC-GCAACGGCGAA-CCTTGTACCACGAAGAT
**
2645 ACGAAGGGAAAGGTTTAAGTCGCAACGGTAAACCTTGTAGCTCA-GAAGCAT
1 --GAAGGGAAAGGTTTAAGTCGCAACGGCGAACCTTGTA-C-CACGAAG-AT
* * * *
2696 GAAAGGGAAAGATTTGAG-CTGCAATGGCGAATCC-AGTACCACGAAGACAT
1 G-AAGGGAAAGGTTTAAGTC-GCAACGGCGAA-CCTTGTACCACGAAG--AT
* *
2746 GAGGGGAAAGGTTTAAGTCGCAAAGGCGAACCTT
1 GAAGGGAAAGGTTTAAGTCGCAACGGCGAACCTT
2780 ATAAGCATGA
Statistics
Matches: 289, Mismatches: 55, Indels: 66
0.70 0.13 0.16
Matches are distributed among these distances:
46 2 0.01
47 8 0.03
48 45 0.16
49 178 0.62
50 46 0.16
51 10 0.03
ACGTcount: A:0.37, C:0.17, G:0.28, T:0.18
Consensus pattern (47 bp):
GAAGGGAAAGGTTTAAGTCGCAACGGCGAACCTTGTACCACGAAGAT
Found at i:2567 original size:98 final size:98
Alignment explanation
Indices: 2352--2779 Score: 563
Period size: 98 Copynumber: 4.4 Consensus size: 98
2342 ACCATGAAAC
* * *
2352 ACGAAGGGAAAGGTTTAAGTCGTAACGGCGAACCTTGTACCTCAGAAGCATGAAGGG-AAGATTT
1 ACGAAGGGAAAGGTTTAAGTCGCAACGGCGAACCTTGTACCTCAGAAGAATAAAGGGAAAGATTT
** *
2416 AAGCTACAACGATGAATCCAGTACCACGGAGAT
66 AAGCGGCAACGACGAATCCAGTACCACGGAGAT
* *
2449 ACGAAGGGAAAGGTTTAAGTCGCAACGGTGAACCTTGTACCTCAGAAGAAAAAAGGGAAAGATTT
1 ACGAAGGGAAAGGTTTAAGTCGCAACGGCGAACCTTGTACCTCAGAAGAATAAAGGGAAAGATTT
* * * *
2514 AAGTC-GTAATGGCGAATCCAATACCACGGAGAT
66 AAG-CGGCAACGACGAATCCAGTACCACGGAGAT
* * * *
2547 ACGAAGGGAAAGGTTTAAGTCGTAACGGCAAACCTTGTACCTTAGAAGAATGAAGGGAAAGATTT
1 ACGAAGGGAAAGGTTTAAGTCGCAACGGCGAACCTTGTACCTCAGAAGAATAAAGGGAAAGATTT
2612 AAGCGGCAACGACGAATCCAGTACCACGGAGAT
66 AAGCGGCAACGACGAATCCAGTACCACGGAGAT
** * *
2645 ACGAAGGGAAAGGTTTAAGTCGCAACGGTAAACCTTGTAGCTCAGAAGCATGAAAGGGAAAGATT
1 ACGAAGGGAAAGGTTTAAGTCGCAACGGCGAACCTTGTACCTCAGAAGAAT-AAAGGGAAAGATT
* * * * * *
2710 TGAGCTGCAATGGCGAATCCAGTACCACGAAGAC
65 TAAGCGGCAACGACGAATCCAGTACCACGGAGAT
* * *
2744 ATGAGGGGAAAGGTTTAAGTCGCAAAGGCGAACCTT
1 ACGAAGGGAAAGGTTTAAGTCGCAACGGCGAACCTT
2780 ATAAGCATGA
Statistics
Matches: 289, Mismatches: 38, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
97 53 0.18
98 164 0.57
99 72 0.25
ACGTcount: A:0.37, C:0.17, G:0.28, T:0.18
Consensus pattern (98 bp):
ACGAAGGGAAAGGTTTAAGTCGCAACGGCGAACCTTGTACCTCAGAAGAATAAAGGGAAAGATTT
AAGCGGCAACGACGAATCCAGTACCACGGAGAT
Found at i:2691 original size:196 final size:196
Alignment explanation
Indices: 2341--2779 Score: 659
Period size: 196 Copynumber: 2.2 Consensus size: 196
2331 CAGGTCTTAG
* *
2341 TACCATGAA-ACACGAAGGGAAAGGTTTAAGTCGTAACGGCGAACCTTGTACCTCAGAAGCATGA
1 TACCACGAAGACACGAAGGGAAAGGTTTAAGTCGTAACGGCGAACCTTGTACCTCAGAAGAATGA
* *
2405 AGGGAAGATTTAAGCTACAACGATGAATCCAGTACCACGGAGATACGAAGGGAAAGGTTTAAGTC
66 AGGGAAGATTTAAGCGACAACGACGAATCCAGTACCACGGAGATACGAAGGGAAAGGTTTAAGTC
* *
2470 GCAACGGTGAACCTTGTACCTCAGAAG-AAAAAAGGGAAAGATTTAAG-TCGTAATGGCGAATCC
131 GCAACGGTAAACCTTGTACCTCAGAAGCAAAAAAGGGAAAGATTTAAGCT-GCAATGGCGAATCC
2533 AA
195 AA
* * * *
2535 TACCACGGAGATACGAAGGGAAAGGTTTAAGTCGTAACGGCAAACCTTGTACCTTAGAAGAATGA
1 TACCACGAAGACACGAAGGGAAAGGTTTAAGTCGTAACGGCGAACCTTGTACCTCAGAAGAATGA
*
2600 AGGGAAAGATTTAAGCGGCAACGACGAATCCAGTACCACGGAGATACGAAGGGAAAGGTTTAAGT
66 AGGG-AAGATTTAAGCGACAACGACGAATCCAGTACCACGGAGATACGAAGGGAAAGGTTTAAGT
* ** *
2665 CGCAACGGTAAACCTTGTAGCTCAGAAGCATGAAAGGGAAAGATTTGAGCTGCAATGGCGAATCC
130 CGCAACGGTAAACCTTGTACCTCAGAAGCAAAAAAGGGAAAGATTTAAGCTGCAATGGCGAATCC
*
2730 AG
195 AA
* * * *
2732 TACCACGAAGACATGAGGGGAAAGGTTTAAGTCGCAAAGGCGAACCTT
1 TACCACGAAGACACGAAGGGAAAGGTTTAAGTCGTAACGGCGAACCTT
2780 ATAAGCATGA
Statistics
Matches: 218, Mismatches: 23, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
194 7 0.03
195 55 0.25
196 83 0.38
197 72 0.33
198 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.27, T:0.18
Consensus pattern (196 bp):
TACCACGAAGACACGAAGGGAAAGGTTTAAGTCGTAACGGCGAACCTTGTACCTCAGAAGAATGA
AGGGAAGATTTAAGCGACAACGACGAATCCAGTACCACGGAGATACGAAGGGAAAGGTTTAAGTC
GCAACGGTAAACCTTGTACCTCAGAAGCAAAAAAGGGAAAGATTTAAGCTGCAATGGCGAATCCA
A
Found at i:3279 original size:17 final size:16
Alignment explanation
Indices: 3246--3304 Score: 73
Period size: 17 Copynumber: 3.4 Consensus size: 16
3236 CCTAACTTGC
3246 ATTTCAAATTGATTTTAA
1 ATTT-AAATT-ATTTTAA
*
3264 GTTTACAATTATTTTAA
1 ATTTA-AATTATTTTAA
3281 ATTTAAATTTATTTTAA
1 ATTTAAA-TTATTTTAA
3298 ATTTAAA
1 ATTTAAA
3305 AATTTAAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
16 2 0.05
17 28 0.76
18 7 0.19
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.53
Consensus pattern (16 bp):
ATTTAAATTATTTTAA
Found at i:3913 original size:6 final size:6
Alignment explanation
Indices: 3902--3950 Score: 53
Period size: 6 Copynumber: 7.8 Consensus size: 6
3892 ATAGGTTTAA
** *
3902 TAATAT TAATAT TAACGT TAATAT TAATAT TAATAAT AAAATAT TAATA
1 TAATAT TAATAT TAATAT TAATAT TAATAT TAAT-AT -TAATAT TAATA
3951 ATTTTAATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
6 28 0.80
7 4 0.11
8 3 0.09
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (6 bp):
TAATAT
Found at i:4871 original size:30 final size:30
Alignment explanation
Indices: 4835--4945 Score: 122
Period size: 30 Copynumber: 3.7 Consensus size: 30
4825 CCTTACACTG
*
4835 TCAAAAAT-CATATTTTGACCCCTGAACTTT
1 TCAAAAATCCAT-TTTTGACCCCTAAACTTT
4865 TCAAAAATTCCATTTTTGACCCC-AAACTTT
1 TCAAAAA-TCCATTTTTGACCCCTAAACTTT
* *
4895 TTAAAAATTACATTTTT-ACCCCTAAACTTCT
1 TCAAAAA-TCCATTTTTGACCCCTAAACTT-T
*
4926 T-AAAATTCCATTTTTGACCC
1 TCAAAAATCCATTTTTGACCC
4946 TAATTTTTGA
Statistics
Matches: 71, Mismatches: 5, Indels: 10
0.83 0.06 0.12
Matches are distributed among these distances:
29 13 0.18
30 42 0.59
31 13 0.18
32 3 0.04
ACGTcount: A:0.33, C:0.24, G:0.04, T:0.39
Consensus pattern (30 bp):
TCAAAAATCCATTTTTGACCCCTAAACTTT
Found at i:4915 original size:29 final size:28
Alignment explanation
Indices: 4859--4998 Score: 131
Period size: 29 Copynumber: 4.8 Consensus size: 28
4849 TTGACCCCTG
*
4859 AACTTTTCAAAAATTCCATTTTTGACCCCA
1 AACTTTT-TAAAATTCCATTTTT-ACCCCA
*
4889 AACTTTTTAAAAATTACATTTTTACCCCTA
1 AACTTTTT-AAAATTCCATTTTTACCCC-A
* *
4919 AACTTCTTAAAATTCCATTTTTGA-CCCT
1 AACTTTTTAAAATTCCATTTTT-ACCCCA
* *
4947 AA-TTTTTGAAAATTACATTTTTACCCTCG
1 AACTTTTT-AAAATTCCATTTTTACCC-CA
**
4976 AACTTCCTAAAATTCCATTTTTA
1 AACTTTTTAAAATTCCATTTTTA
4999 ACCCTAAAAT
Statistics
Matches: 92, Mismatches: 11, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
27 5 0.05
28 17 0.18
29 38 0.41
30 32 0.35
ACGTcount: A:0.33, C:0.22, G:0.03, T:0.42
Consensus pattern (28 bp):
AACTTTTTAAAATTCCATTTTTACCCCA
Found at i:4968 original size:57 final size:58
Alignment explanation
Indices: 4837--5005 Score: 209
Period size: 57 Copynumber: 2.9 Consensus size: 58
4827 TTACACTGTC
* * * *
4837 AAAAATCATATTTTGACCCCTGAACTT-TTCAAAAATTCCATTTTTGACCCCAAACTTTTT
1 AAAAATTACATTTTTACCCCTGAACTTCTT--AAAATTCCATTTTTGA-CCCTAACTTTTT
*
4897 AAAAATTACATTTTTACCCCTAAACTTCTTAAAATTCCATTTTTGACCCTAA-TTTTT
1 AAAAATTACATTTTTACCCCTGAACTTCTTAAAATTCCATTTTTGACCCTAACTTTTT
* * *
4954 GAAAATTACATTTTTA-CCCTCGAACTTCCTAAAATTCCATTTTTAACCCTAA
1 AAAAATTACATTTTTACCCCT-GAACTTCTTAAAATTCCATTTTTGACCCTAA
5006 AATTTCCCAA
Statistics
Matches: 98, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
56 4 0.04
57 48 0.49
58 5 0.05
59 16 0.16
60 23 0.23
61 2 0.02
ACGTcount: A:0.34, C:0.23, G:0.04, T:0.40
Consensus pattern (58 bp):
AAAAATTACATTTTTACCCCTGAACTTCTTAAAATTCCATTTTTGACCCTAACTTTTT
Found at i:5071 original size:28 final size:29
Alignment explanation
Indices: 5012--5074 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 29
5002 CTAAAATTTC
* *
5012 CCAAAATTTACCATTTTGCCCTAGAGTGT
1 CCAAAATTTACCATTTTACCCTAGAGTAT
* *
5041 CCAAAA-TTACCATTTTACCCTCGGGTAT
1 CCAAAATTTACCATTTTACCCTAGAGTAT
5069 CCAAAA
1 CCAAAA
5075 ATCTCATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 24 0.80
29 6 0.20
ACGTcount: A:0.32, C:0.27, G:0.11, T:0.30
Consensus pattern (29 bp):
CCAAAATTTACCATTTTACCCTAGAGTAT
Found at i:11154 original size:40 final size:40
Alignment explanation
Indices: 11091--11186 Score: 93
Period size: 40 Copynumber: 2.4 Consensus size: 40
11081 TATCACAGTT
* * * * * * * *
11091 TTTACAGTGTCTCTCCCAGTTCAATTTTAATGTCGTAGAG
1 TTTACAGTGTCACTGCTAATTCAACTATAATATCGCAGAG
* * *
11131 TTTATAGTGTCACTGCTAATTCAACTATAATATTGCAGTG
1 TTTACAGTGTCACTGCTAATTCAACTATAATATCGCAGAG
11171 TTTACAGTGTCACTGC
1 TTTACAGTGTCACTGC
11187 CAGTCCAGTA
Statistics
Matches: 44, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.40
Consensus pattern (40 bp):
TTTACAGTGTCACTGCTAATTCAACTATAATATCGCAGAG
Found at i:11628 original size:128 final size:127
Alignment explanation
Indices: 11525--11931 Score: 530
Period size: 128 Copynumber: 3.2 Consensus size: 127
11515 TGACATACAC
* * * ** * *
11525 CTGTGTGTCCAACCCGTGTGTCCCCTGTACGCTAGTTTACAAAATAGTATGCATACACGGTCTGA
1 CTGTGGGTCCAGCCCGTGTATATCCTGTATGCTAGTTTACAAAATAGTATGCACACACGGTCTGA
* *
11590 CACACGCTTGTGTGCCTAGCCTGTGTGTCACTAAACAGTATGTACACACAGTCTAGCACACGA
66 CACACGCTT-TGTGCCCAGCCTGTGTGTCACTAAACAGTATGTACACACGGTCTAGCACACGA
* *
11653 CTGTGGGTCCAGCCCGTGTATATCCTGTATGCTAGTTTACAAAACAGTATGCACACACGGTTTGA
1 CTGTGGGTCCAGCCCGTGTATATCCTGTATGCTAGTTTACAAAATAGTATGCACACACGGTCTGA
* * *
11718 CACACGCTTTGTGCCCAACCCGTGTGTCACTAAACAGTATGTACACACGATCTAGCACACGA
66 CACACGCTTTGTGCCCAGCCTGTGTGTCACTAAACAGTATGTACACACGGTCTAGCACACGA
* ** *
11780 -TCGTGGGTCCAGCCTGTGTATATTTTGTATGCTAGTTTACAAAATTGTATGCACACACGGTCTG
1 CT-GTGGGTCCAGCCCGTGTATATCCTGTATGCTAGTTTACAAAATAGTATGCACACACGGTCTG
* * * *
11844 ACACACACCCTTGTGCCCAG-CTCGTGTGTCACTAAATAGTATGTACACACGGTCTAGCACACGG
65 ACACAC-GCTTTGTGCCCAGCCT-GTGTGTCACTAAACAGTATGTACACACGGTCTAGCACACGA
* * **
11908 TTGTGGCTATAGCCCGTGTATATC
1 CTGTGGGTCCAGCCCGTGTATATC
11932 TTATACCTTC
Statistics
Matches: 243, Mismatches: 32, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
126 1 0.00
127 111 0.46
128 130 0.53
129 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (127 bp):
CTGTGGGTCCAGCCCGTGTATATCCTGTATGCTAGTTTACAAAATAGTATGCACACACGGTCTGA
CACACGCTTTGTGCCCAGCCTGTGTGTCACTAAACAGTATGTACACACGGTCTAGCACACGA
Found at i:15170 original size:20 final size:20
Alignment explanation
Indices: 15129--15170 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
15119 GAAACCTACT
*
15129 TAATATATCACATCAATGAA
1 TAATATATCACATCAATAAA
*
15149 TAATATA-CATATCATATAAA
1 TAATATATCACATCA-ATAAA
15169 TA
1 TA
15171 TGCAATCTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.52, C:0.12, G:0.02, T:0.33
Consensus pattern (20 bp):
TAATATATCACATCAATAAA
Done.