Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014072.1 Kokia drynarioides strain JFW-HI SEQ_129103, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39067
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.31
Found at i:1009 original size:216 final size:216
Alignment explanation
Indices: 619--2962 Score: 2908
Period size: 216 Copynumber: 10.9 Consensus size: 216
609 ACCAGTTCAA
* * * * *
619 AAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCTCGTAAAAAAGTTTTTAATTGAAAAACCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAA
*
684 AAGTTGTTTACAAAATGACAAACTATTAAGACCAAATGATGCGATTTCCCGATCATGGAATGTTC
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTC
* ** * * *
749 ATAAAATTGGTCGAAGGAATGGATCGTCTTGACCACTATCAGGAACCGAACTTATAAAAGAACTA
131 AGAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTA
814 GTAAATGTTTGACAAGTTCGG
196 GTAAATGTTTGACAAGTTCGG
* *
835 TACTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAA
* * * *
900 AAGTTGTTTACAAAATGACAAACTTTTTTGTCCAAATGATGCGATTTCCCGAGCATGGAATGTTC
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTC
* * * *
965 AGAAAATTGGTCGAAGGAATGGATCATCTTGAATAATCTCAGGAATTGAAGTTATAAAAGAACTC
131 AGAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTA
*
1030 GTAAAGGTTTGACAAGTTCGG
196 GTAAATGTTTGACAAGTTCGG
* * * * * *
1051 ATGTTCGTCCAAGAA-CAAGAGAAAAACG-ACTCACACGTAAATAAGTTTTTAATTCAAAGGCCA
1 AAGTTCGTCCAAGAACCAAGAGAGAAA-GAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACC-
* **
1114 AAAAG-TGTTTCCAAAATGACAAACTATGAAGACCAAATGATGCGATTTCCCGATCATGGAATGT
64 AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGATCATGGAATGT
* * * * * * * *
1178 TC-GAAAAAATGGTCAAAGGAATGGATCGTCTCGACTACTATCAGGAATCGACGTAATAAAAAAA
129 TCAG-AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAA
1242 CTAGTAAATGTTTGACAAGTTCGG
193 CTAGTAAATGTTTGACAAGTTCGG
* *
1266 AAGTTCGTCCAAGAAACAAGAGAGAAAGAATTCTCACGTAAAAAAGTTTTTAATTTAAAGACCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAA
* * * ** *
1331 AAGTTATTTACAAAATGGCAAACTATTTTGACCAAATGATGCGATTTTTCGATCATGGAATATTC
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTC
* * * *
1396 -GAAAAATTTGTCAAAGGAATGGATTGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACT
131 AG-AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACT
* * *
1460 TGTAAAAGTTTGACAAGTTCGT
195 AGTAAATGTTTGACAAGTTCGG
* * * * * * * *
1482 ATGTTCATCCAAGAACCAAAAG-GAAACAACTCTCATGTAAATAAGTATTTAATTCAAAGACCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAA
* * * * * ** *
1546 ATGTTTTTTACAAAATGAAAAACTATTTAGATCAAATGAAGCGATTTCCCGGGCATGGAACGTTC
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTC
* * * * *
1611 AAAAAATTGGTCGAAAGAATGGATCGTCTTTAATACTCTCAGGAACCGAAGTTATAAAAGAACTC
131 AGAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTA
* * *
1676 GTAAATGTTTCACGAGTTCAG
196 GTAAATGTTTGACAAGTTCGG
* * * * * * *
1697 AAGTTCATCAAAGAACTAATAGAGAAACAATTCTCATGTAAAATAGTTTTTAATTCAAAGACCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAA
* * * *
1762 AAGTTGCTTACAAAATGACAAACTATTTAGACCAAGTGATGCGATTTCTC-AGCATGGAAT-TTC
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTC
* * * * * *
1825 AGAAAATTGCTCAAATGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTT
131 AGAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTA
* * *
1890 G-AAATATTTTGACCAA-TTTGT
196 GTAAAT-GTTTGA-CAAGTTCGG
* * * *
1911 ATGTTCGTCCAAGAACCAAGA-AGGAAACAATGCTCACGTAAAAAAGTATTTAATTCAAAG-CAC
1 AAGTTCGTCCAAGAACCAAGAGA-GAAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGAC-C
* * * *
1974 AAAAGTTGTTTACAAAATGACAAACTATTAAGACCAAATTATGTGAATTCCCGATCATGGAATGT
64 AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGATCATGGAATGT
* * * * * *
2039 TCAAAAAATTGGTCGAAGGAATGGATTGTCTTGACTACTATCAGGAACCGAAGTTATAGAAGAAC
129 TCAGAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAAC
* *
2104 TAGTAAATGTTTGACAAATTCGA
194 TAGTAAATGTTTGACAAGTTCGG
* * *
2127 AAGTTTGTCCAAGAA-CAAGTAGAGAAAGAACTCTAACGTAAAAAAGTTTTTAATTCAAAAGACC
1 AAGTTCGTCCAAGAACCAAG-AGAGAAAGAATTCTCACGTAAAAAAGTTTTTAATTC-AAAGACC
* * * * * ** *
2191 AAAATTTATTTATAAAATGAAAAACTATTTTGACCAAAAAATGCGATTTCCCGATCATGGAATCT
64 AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGATCATGGAATGT
* * *
2256 TCTA-AAAATTAGTCAAAGGAATGGATCGTCTTGGATACTCTCAGGAATCGAAGTTATAAAAGAA
129 TC-AGAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAA
* * *
2320 CTCGTAAATGTTTAACCAGTTCGG
193 CTAGTAAATGTTTGACAAGTTCGG
* *
2344 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCTA-GTAAAAAAGTTTTTAATTGAAAGACCA
1 AAGTTCGTCCAAGAACCAAGAGAGAAAGAATTCTC-ACGTAAAAAAGTTTTTAATTCAAAGACCA
* *
2408 AAAGTTGTTTACAAAATAACAAACTATTTAGACCAAATGATGCGATTTCCTGATCATGGAATGTT
65 AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTT
* ** * *
2473 CATAAAATTGGTCGAAGGAATGGATCGTCTTGACCACTATCAGGAATCGAACTTATAAAAGAACT
130 CAGAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACT
2538 AGTAAATGTTTGACAAGTTCGG
195 AGTAAATGTTTGACAAGTTCGG
* * *
2560 TACTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCACGTAAAAAAGTTTTTAATTTAAAGACCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAA
* * * *
2625 AAGTTGTTTACAAAATGACAAACTTTTTTGTCCAAATGATGCGATTTCCCGAGCATGGAATGTTC
66 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTC
* * * *
2690 AGAAAATTGGTCGAAGGAATGGATCATCTTGAATAATCTCAGGAATTGAAGTTATAAAAGAACTC
131 AGAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTA
*
2755 GTAAAGGTTTGACAAGTTCGG
196 GTAAATGTTTGACAAGTTCGG
* * * * *
2776 AAGTTCGTCCAAGAA-CAAGAGAAAAACG-ACTCACACGTAAATAAGTTTTTAATTCAAAGGCCA
1 AAGTTCGTCCAAGAACCAAGAGAGAAA-GAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACC-
* ** *
2839 AAAAG-TGTTTCCAAAATGACAAACTATGAAGACCAAATGATGCGATTTCCCGATCATGAAATGT
64 AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGATCATGGAATGT
* * * * * *
2903 TC-GAAAAAATGGTCAAAGGAATGGATCGTCTTGACTACTATCAGGAATCGACGTAATAAA
129 TCAG-AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAA
2963 CGCATGTTCA
Statistics
Matches: 1820, Mismatches: 280, Indels: 57
0.84 0.13 0.03
Matches are distributed among these distances:
213 6 0.00
214 163 0.09
215 531 0.29
216 932 0.51
217 181 0.10
218 7 0.00
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (216 bp):
AAGTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAA
AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTC
AGAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGAACTA
GTAAATGTTTGACAAGTTCGG
Found at i:1438 original size:431 final size:431
Alignment explanation
Indices: 594--2962 Score: 3077
Period size: 431 Copynumber: 5.5 Consensus size: 431
584 GTTTTGAATC
** * ** * * * *
594 ACTCGTAAAGGTTAAACCAGTTCAAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCTCGTA
1 ACTCGTAAAGGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAAAACAACTCTCACGTA
* *
659 AAAAAGTTTTTAATTGAAAAACCAAAAGTTGTTTACAAAATGACAAACTATTAAGACCAAATGAT
66 AAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTAAGACCAAATGAT
* * *
724 GCGATTTCCCGATCATGGAATGTTCATAAAATTGGTCGAAGGAATGGATCGTCTTGACCACTATC
131 GCGATTTCCCGATCATGGAATGTTCA-AAAAATGGTCAAAGGAATGGATCGTCTTGACTACTATC
* * *
789 AGGAACCGAAC-TTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGTACTTCGTCCAAGAACCA
195 AGGAACCG-ACGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAAACA
853 AGAGAGAAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
259 AGAGAGAAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* * *
918 CAAACTTTTTTGTCCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGGTCGAAGGA
324 CAAACTATTTTGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGGTCAAAGGA
* * *
983 ATGGATCATCTTGAATAATCTCAGGAATTGAAGTTATAAAAGA
389 ATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGA
* * *
1026 ACTCGTAAAGGTTTGACAAGTTCGGATGTTCGTCCAAGAA-CAAGAGAAAAACGACTCACACGTA
1 ACTCGTAAAGGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAAAACAACTCTCACGTA
* * * *
1090 AATAAGTTTTTAATTCAAAGGCCAAAAAG-TGTTTCCAAAATGACAAACTATGAAGACCAAATGA
66 AAAAAGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTATTAAGACCAAATGA
*
1154 TGCGATTTCCCGATCATGGAATGTTCGAAAAAATGGTCAAAGGAATGGATCGTCTCGACTACTAT
130 TGCGATTTCCCGATCATGGAATGTTC-AAAAAATGGTCAAAGGAATGGATCGTCTTGACTACTAT
* * *
1219 CAGGAATCGACGTAATAAAAAAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAAACA
194 CAGGAACCGACGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAAACA
* * *
1284 AGAGAGAAAGAATTCTCACGTAAAAAAGTTTTTAATTTAAAGACCAAAAGTTATTTACAAAATGG
259 AGAGAGAAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
** * * *
1349 CAAACTATTTTGACCAAATGATGCGATTTTTCGATCATGGAATATTC-GAAAAATTTGTCAAAGG
324 CAAACTATTTTGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAG-AAAATTGGTCAAAGG
* *
1413 AATGGATTGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGA
388 AATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGA
* * * * * * * *
1457 ACTTGTAAAAGTTTGACAAGTTCGTATGTTCATCCAAGAACCAAAAG-GAAACAACTCTCATGTA
1 ACTCGTAAAGGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAAAACAACTCTCACGTA
* * * * * * * *
1521 AATAAGTATTTAATTCAAAGACCAAATGTTTTTTACAAAATGAAAAACTATTTAGATCAAATGAA
66 AAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTAAGACCAAATGAT
** * * * *
1586 GCGATTTCCCGGGCATGGAACGTTCAAAAAATTGGTCGAAA-GAATGGATCGTCTTTAATACTCT
131 GCGATTTCCCGATCATGGAATGTTCAAAAAA-TGGTC-AAAGGAATGGATCGTCTTGACTACTAT
* * * * * * *
1650 CAGGAACCGAAGTTATAAAAGAACTCGTAAATGTTTCACGAGTTCAGAAGTTCATCAAAG-AACT
194 CAGGAACCGACGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAAAC-
* * * * *
1714 AATAGAGAAACAATTCTCATGTAAAATAGTTTTTAATTCAAAGACCAAAAGTTGCTTACAAAATG
258 AAGAGAGAAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG
* * * * *
1779 ACAAACTATTTAGACCAAGTGATGCGATTTCTC-AGCATGGAAT-TTCAGAAAATTGCTCAAATG
323 ACAAACTATTTTGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGGTCAAAGG
* *
1842 AATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGA
388 AATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGA
* ** * * * *
1886 ACTTG-AAATATTTTGACCAA-TTTGTATGTTCGTCCAAGAACCAAGA-AGGAAACAA-TGCTCA
1 ACTCGTAAA-GGTTTGA-CAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA-AAAACAACT-CTCA
*
1947 CGTAAAAAAGTATTTAATTCAAAG-CACAAAAGTTGTTTACAAAATGACAAACTATTAAGACCAA
62 CGTAAAAAAGTTTTTAATTCAAAGAC-CAAAAGTTGTTTACAAAATGACAAACTATTAAGACCAA
* * * * *
2011 ATTATGTGAATTCCCGATCATGGAATGTTCAAAAAATTGGTCGAAGGAATGGATTGTCTTGACTA
126 ATGATGCGATTTCCCGATCATGGAATGTTCAAAAAA-TGGTCAAAGGAATGGATCGTCTTGACTA
* * * * *
2076 CTATCAGGAACCGAAGTTATAGAAGAACTAGTAAATGTTTGACAAATTCGAAAGTTTGTCCAAG-
190 CTATCAGGAACCGACGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGA
* * * * *
2140 AACAAGTAGAGAAAGAACTCTAACGTAAAAAAGTTTTTAATTCAAAAGACCAAAATTTATTTATA
255 AACAAG-AGAGAAAGAATTCTCACGTAAAAAAGTTTTTAATTC-AAAGACCAAAAGTTGTTTACA
* ** * * *
2205 AAATGAAAAACTATTTTGACCAAAAAATGCGATTTCCCGATCATGGAATCTTCTA-AAAATTAGT
318 AAATGACAAACTATTTTGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AGAAAATTGGT
*
2269 CAAAGGAATGGATCGTCTTGGATACTCTCAGGAATCGAAGTTATAAAAGA
382 CAAAGGAATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGA
* * * * *
2319 ACTCGTAAATGTTTAACCAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCTA-GT
1 ACTCGTAAAGGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAAAACAACTCTC-ACGT
* * *
2383 AAAAAAGTTTTTAATTGAAAGACCAAAAGTTGTTTACAAAATAACAAACTATTTAGACCAAATGA
65 AAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTAAGACCAAATGA
* * * *
2448 TGCGATTTCCTGATCATGGAATGTTCATAAAATTGGTCGAAGGAATGGATCGTCTTGACCACTAT
130 TGCGATTTCCCGATCATGGAATGTTCA-AAAAATGGTCAAAGGAATGGATCGTCTTGACTACTAT
* * * *
2513 CAGGAATCGAAC-TTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGTACTTCGTCCAAGAACC
194 CAGGAACCG-ACGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAAAC
*
2577 AAGAGAGAAAGAATTCTCACGTAAAAAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATG
258 AAGAGAGAAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG
* * *
2642 ACAAACTTTTTTGTCCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGGTCGAAGG
323 ACAAACTATTTTGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGGTCAAAGG
* * *
2707 AATGGATCATCTTGAATAATCTCAGGAATTGAAGTTATAAAAGA
388 AATGGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGA
* *
2751 ACTCGTAAAGGTTTGACAAGTTCGGAAGTTCGTCCAAGAA-CAAGAGAAAAACGACTCACACGTA
1 ACTCGTAAAGGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAAAACAACTCTCACGTA
* * * *
2815 AATAAGTTTTTAATTCAAAGGCCAAAAAG-TGTTTCCAAAATGACAAACTATGAAGACCAAATGA
66 AAAAAGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTATTAAGACCAAATGA
*
2879 TGCGATTTCCCGATCATGAAATGTTCGAAAAAATGGTCAAAGGAATGGATCGTCTTGACTACTAT
130 TGCGATTTCCCGATCATGGAATGTTC-AAAAAATGGTCAAAGGAATGGATCGTCTTGACTACTAT
* *
2944 CAGGAATCGACGTAATAAA
194 CAGGAACCGACGTTATAAA
2963 CGCATGTTCA
Statistics
Matches: 1679, Mismatches: 222, Indels: 73
0.85 0.11 0.04
Matches are distributed among these distances:
428 3 0.00
429 95 0.06
430 236 0.14
431 815 0.49
432 218 0.13
433 294 0.18
434 18 0.01
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (431 bp):
ACTCGTAAAGGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAAAACAACTCTCACGTA
AAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTAAGACCAAATGAT
GCGATTTCCCGATCATGGAATGTTCAAAAAATGGTCAAAGGAATGGATCGTCTTGACTACTATCA
GGAACCGACGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAAACAAG
AGAGAAAGAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACA
AACTATTTTGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGGTCAAAGGAAT
GGATCGTCTTGAATACTCTCAGGAATCGAAGTTATAAAAGA
Found at i:2371 original size:647 final size:645
Alignment explanation
Indices: 620--2962 Score: 2969
Period size: 647 Copynumber: 3.6 Consensus size: 645
610 CCAGTTCAAA
* * * *
620 AGTTCATCCAAGAACCAAGAGAGAAACAATTCTCTCGTAAAAAAGTTTTTAATTGAAAAACCAAA
1 AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTTAAAGACCAAA
685 AGTTGTTTACAAAATGACAAACTATTAAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCA
66 AGTTGTTTACAAAATGACAAACTATTAAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCA
* ** *
750 TAAAATTGGTCGAAGGAATGGATCGTCTTGACCACTATCAGGAACCGAACTTATAAAAGAACTAG
131 AAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTATCAGGAACCGAAGTTATAAAAGAACTAG
* * * *
815 TAAATGTTTGACAAGTTCGGTACTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCACGTAAAAAA
196 TAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAAGAACTCTAACGTAAAAAA
* * * * * *
880 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTTTTTTGTCCAAATGATGCGAT
261 GTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGAAAAACTATTTAGACCAAATAATGCGAT
* * * *
945 TTCCCGAGCATGGAATGTTCAGAAAATTGGTCGAAGGAATGGATCATCTTGAATAATCTCAGGAA
326 TTCCCGAGCATGGAATCTTCA-AAAATTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAA
* * * * *
1010 TTGAAGTTATAAAAGAACTCGTAAAGGTTTGACAAGTTCGGATGTTCGTCCAAGAA-CAAGAGAA
390 TCGAAGTTATAAAAGAACTCGTAAATGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAG
* * * * * *
1074 AAACGACTCACACGT-AAATAAGTTTTTAATTCAAAGGCCAAAAAG-TGTTTCCAAAATGACAAA
455 AAACAATTCTCATGTAAAAT-AGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAA
** * *
1137 CTATGAAGACCAAATGATGCGATTTCCCGATCATGGAATGTTC-GAAAAAATGGTCAAAGGAATG
518 CTATTTAGACCAAATGATGCGATTTCTC-ATCATGGAATGTTCAG-AAAATTGGTCAAAGGAATG
* * * *
1201 GATCGTCTCGACTACTATCAGGAATCGACGTAATAAAAAAACTAGTAAATGTTTGACAAGTTCGG
581 GATCGTCTTGACTACTATCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTC-G
*
1266 A
645 T
* *
1267 AGTTCGTCCAAGAAACAAGAGAGAAAGAATTCTCACGTAAAAAAGTTTTTAATTTAAAGACCAAA
1 AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTTAAAGACCAAA
* * ** ** * *
1332 AGTTATTTACAAAATGGCAAACTATTTTGACCAAATGATGCGATTTTTCGATCATGGAATATTCG
66 AGTTGTTTACAAAATGACAAACTATTAAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCA
* * * * *
1397 AAAAATTTGTCAAAGGAATGGATTGTCTTGAATACTCTCAGGAACCGAAGTTATAAAAGAACTTG
131 AAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTATCAGGAACCGAAGTTATAAAAGAACTAG
* * * * * * * * *
1462 TAAAAGTTTGACAAGTTCGTATGTTCATCCAAGAACCAAAAG-GAAACAACTCTCATGTAAATAA
196 TAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAAGAACTCTAACGTAAAAAA
* * *
1526 GTATTTAATTCAAAGACC-AAATGTTTTTTACAAAATGAAAAACTATTTAGATCAAATGAA-GCG
261 GTTTTTAATTCAAAGACCAAAAT-TTGTTTACAAAATGAAAAACTATTTAGACCAAAT-AATGCG
* *
1589 ATTTCCCGGGCATGGAA-CGTTCAAAAAATTGGTCGAAA-GAATGGATCGTCTTTAATACTCTCA
324 ATTTCCCGAGCATGGAATC-TTC-AAAAATTGGTC-AAAGGAATGGATCGTCTTGAATACTCTCA
* * * * * * * *
1652 GGAACCGAAGTTATAAAAGAACTCGTAAATGTTTCACGAGTTCAGAAGTTCATCAAAGAACTAAT
386 GGAATCGAAGTTATAAAAGAACTCGTAAATGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAG
*
1717 AGAGAAACAATTCTCATGTAAAATAGTTTTTAATTCAAAGACCAAAAGTTGCTTACAAAATGACA
451 AGAGAAACAATTCTCATGTAAAATAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACA
* * * *
1782 AACTATTTAGACCAAGTGATGCGATTTCTCAGCATGGAAT-TTCAGAAAATTGCTCAAATGAATG
516 AACTATTTAGACCAAATGATGCGATTTCTCATCATGGAATGTTCAGAAAATTGGTCAAAGGAATG
* * * * * *
1846 GATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTTG-AAATATTTTGACCAA-TTT
581 GATCGTCTTGACTACTATCAGGAATCGAAGTTATAAAAGAACTAGTAAAT-GTTTGA-CAAGTTC
1909 GT
644 GT
* * *
1911 ATGTTCGTCCAAGAACCAAGA-AGGAAACAATGCTCACGTAAAAAAGTATTTAATTCAAAG-CAC
1 A-GTTCGTCCAAGAACCAAGAGA-GAAACAATTCTCACGTAAAAAAGTTTTTAATTTAAAGAC-C
* * *
1974 AAAAGTTGTTTACAAAATGACAAACTATTAAGACCAAATTATGTGAATTCCCGATCATGGAATGT
63 AAAAGTTGTTTACAAAATGACAAACTATTAAGACCAAATGATGCGATTTCCCGATCATGGAATGT
* * *
2039 TCAAAAAATTGGTCGAAGGAATGGATTGTCTTGACTACTATCAGGAACCGAAGTTATAGAAGAAC
128 TCAAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTATCAGGAACCGAAGTTATAAAAGAAC
* * *
2104 TAGTAAATGTTTGACAAATTCGAAAGTTTGTCCAAGAA-CAAGTAGAGAAAGAACTCTAACGTAA
193 TAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAG-AGAGAAAGAACTCTAACGTAA
* * * *
2168 AAAAGTTTTTAATTCAAAAGACCAAAATTTATTTATAAAATGAAAAACTATTTTGACCAAAAAAT
257 AAAAGTTTTTAATTC-AAAGACCAAAATTTGTTTACAAAATGAAAAACTATTTAGACCAAATAAT
* * *
2233 GCGATTTCCCGATCATGGAATCTTCTAAAAATTAGTCAAAGGAATGGATCGTCTTGGATACTCTC
321 GCGATTTCCCGAGCATGGAATCTTC-AAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTCTC
*
2298 AGGAATCGAAGTTATAAAAGAACTCGTAAATGTTTAACCAGTTCGGAAGTTCGTCCAAGAACCAA
385 AGGAATCGAAGTTATAAAAGAACTCGTAAATGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAA
* * *
2363 GAGAGAAACAATTCTC-TAGTAAAAAAGTTTTTAATTGAAAGACCAAAAGTTGTTTACAAAATAA
450 GAGAGAAACAATTCTCAT-GTAAAATAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* * *
2427 CAAACTATTTAGACCAAATGATGCGATTTCCTGATCATGGAATGTTCATAAAATTGGTCGAAGGA
514 CAAACTATTTAGACCAAATGATGCGATTT-CTCATCATGGAATGTTCAGAAAATTGGTCAAAGGA
* *
2492 ATGGATCGTCTTGACCACTATCAGGAATCGAACTTATAAAAGAACTAGTAAATGTTTGACAAGTT
578 ATGGATCGTCTTGACTACTATCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTT
2557 CGGT
643 C-GT
* *
2561 ACTTCGTCCAAGAACCAAGAGAGAAAGAATTCTCACGTAAAAAAGTTTTTAATTTAAAGACCAAA
1 AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTTAAAGACCAAA
* ** * *
2626 AGTTGTTTACAAAATGACAAACTTTTTTGTCCAAATGATGCGATTTCCCGAGCATGGAATGTTCA
66 AGTTGTTTACAAAATGACAAACTATTAAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCA
* * * * ** *
2691 GAAAATTGGTCGAAGGAATGGATCATCTTGAATAATCTCAGGAATTGAAGTTATAAAAGAACTCG
131 AAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTATCAGGAACCGAAGTTATAAAAGAACTAG
* * *
2756 TAAAGGTTTGACAAGTTCGGAAGTTCGTCCAAGAA-CAAGAGAAAAACG-ACTC-ACACGTAAAT
196 TAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAA-GAACTCTA-ACGTAAAA
* ** * * ** *
2818 AAGTTTTTAATTCAAAGGCCAAAAAGTGTTTCCAAAATGACAAACTATGAAGACCAAATGATGCG
259 AAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGAAAAACTATTTAGACCAAATAATGCG
* * * * * *
2883 ATTTCCCGATCATGAAATGTTCGAAAAAATGGTCAAAGGAATGGATCGTCTTGACTACTATCAGG
324 ATTTCCCGAGCATGGAATCTTC-AAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGG
* *
2948 AATCGACGTAATAAA
388 AATCGAAGTTATAAA
2963 CGCATGTTCA
Statistics
Matches: 1455, Mismatches: 210, Indels: 62
0.84 0.12 0.04
Matches are distributed among these distances:
644 11 0.01
645 265 0.18
646 220 0.15
647 628 0.43
648 53 0.04
649 269 0.18
650 9 0.01
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (645 bp):
AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTTAAAGACCAAA
AGTTGTTTACAAAATGACAAACTATTAAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCA
AAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTATCAGGAACCGAAGTTATAAAAGAACTAG
TAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAAGAACTCTAACGTAAAAAA
GTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGAAAAACTATTTAGACCAAATAATGCGAT
TTCCCGAGCATGGAATCTTCAAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAAT
CGAAGTTATAAAAGAACTCGTAAATGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA
AACAATTCTCATGTAAAATAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
TTTAGACCAAATGATGCGATTTCTCATCATGGAATGTTCAGAAAATTGGTCAAAGGAATGGATCG
TCTTGACTACTATCAGGAATCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGT
Found at i:11795 original size:15 final size:15
Alignment explanation
Indices: 11733--11801 Score: 61
Period size: 15 Copynumber: 4.6 Consensus size: 15
11723 TTGGAAGATA
*
11733 TGAACACTGATGCTG
1 TGAACACTCATGCTG
*
11748 CGAACACTCATG-TCG
1 TGAACACTCATGCT-G
* *
11763 TGGACACTCACAGC-G
1 TGAACACTCA-TGCTG
*
11778 TGAACACTGATGCTG
1 TGAACACTCATGCTG
11793 TGAACACTC
1 TGAACACTC
11802 GCATTACGAA
Statistics
Matches: 41, Mismatches: 9, Indels: 8
0.71 0.16 0.14
Matches are distributed among these distances:
14 3 0.07
15 37 0.90
16 1 0.02
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.22
Consensus pattern (15 bp):
TGAACACTCATGCTG
Found at i:13494 original size:216 final size:215
Alignment explanation
Indices: 13100--13538 Score: 564
Period size: 216 Copynumber: 2.0 Consensus size: 215
13090 GAGCTCGTAT
* * *
13100 CAAAAAGTTGTTTACAAAATGACAAACTTTTTAGATCAAGTGATGCGATTTCCCGAGCATGAAAT
1 CAAAAA-TTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCCAAGCATGAAAT
*
13165 GTTCGAAAAATAAGTAGAAGGAATGGATAGTCTTAAATACTCTCAGGAATCGAAGTTATAAAAGA
65 GTTCGAAAAATAAGTAGAAGGAATGGATAGTCTTAAATACTCTCAGGAATAGAAGTTATAAAAGA
* * * ** **
13230 ACTCGTAAATGTTTGACAAGTTCTAAAGTTCGTCCAAGAACTAAGAGAGCTACAATTCTCAGGTA
130 ACTCGTAAATGTTAGACAAGTTCTAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACATA
13295 AATAAGTTTTTAATTCAAAGA
195 AATAAGTTTTTAATTCAAAGA
* * *
13316 CCAAAAATTGTTTACAAAATGACACACTTTTTAGACCAAATTATGCGATTTCCTAAGCATAGAAA
1 -CAAAAATTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCCAAGCAT-GAAA
* * * * *
13381 -GTTCAGAAAATTTA-TCGAAGGAATGGATCA-TCTTGAATACTCTTAGGAATAGAAGTTATAAA
64 TGTTC-GAAAAATAAGTAGAAGGAATGGAT-AGTCTTAAATACTCTCAGGAATAGAAGTTATAAA
* * *
13443 AGAACTCGTAACTGTTAGACAAGTT-TGGAAGTTCATCCACA-AACCAAGAGAGAAATAATTCTC
127 AGAACTCGTAAATGTTAGACAAGTTCT-AAAGTTCATCCA-AGAACCAAGAGAGAAACAATTCTC
* *
13506 ACATAAATAAGTTTTTAATTTAATGA
190 ACATAAATAAGTTTTTAATTCAAAGA
13532 CAAAAAT
1 CAAAAAT
13539 GATGCGAGCA
Statistics
Matches: 193, Mismatches: 24, Indels: 12
0.84 0.10 0.05
Matches are distributed among these distances:
215 8 0.04
216 166 0.86
217 19 0.10
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (215 bp):
CAAAAATTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCCCAAGCATGAAATG
TTCGAAAAATAAGTAGAAGGAATGGATAGTCTTAAATACTCTCAGGAATAGAAGTTATAAAAGAA
CTCGTAAATGTTAGACAAGTTCTAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACATAA
ATAAGTTTTTAATTCAAAGA
Found at i:17742 original size:15 final size:15
Alignment explanation
Indices: 17724--17762 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
17714 TGGAAGATGA
17724 GAGCACT-AGTGTTGC
1 GAGCACTCA-TGTTGC
17739 GAGCACTCATGTTGC
1 GAGCACTCATGTTGC
*
17754 GGGCACTCA
1 GAGCACTCA
17763 CAGCGCGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 21 0.95
16 1 0.05
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.23
Consensus pattern (15 bp):
GAGCACTCATGTTGC
Found at i:19718 original size:18 final size:19
Alignment explanation
Indices: 19685--19721 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
19675 TTTAGGTGTT
19685 CGAGAAAAAAAGAAAAATA
1 CGAGAAAAAAAGAAAAATA
*
19704 CGAGAAAAATA-AAAAATA
1 CGAGAAAAAAAGAAAAATA
19722 AAAAATATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.73, C:0.05, G:0.14, T:0.08
Consensus pattern (19 bp):
CGAGAAAAAAAGAAAAATA
Found at i:23770 original size:39 final size:39
Alignment explanation
Indices: 23716--23794 Score: 122
Period size: 39 Copynumber: 2.0 Consensus size: 39
23706 TCTTGTGTCC
* *
23716 TTAAATCGAGTTCAAGCCTATCCTTTGTAATCCATTACA
1 TTAAACCGAGTTCAAGCCTATCCTTCGTAATCCATTACA
* *
23755 TTAAACCGAGTTCAAGCGTATCCTTCGTTATCCATTACA
1 TTAAACCGAGTTCAAGCCTATCCTTCGTAATCCATTACA
23794 T
1 T
23795 ATCCATCCTA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.35
Consensus pattern (39 bp):
TTAAACCGAGTTCAAGCCTATCCTTCGTAATCCATTACA
Found at i:24032 original size:22 final size:21
Alignment explanation
Indices: 23997--24048 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
23987 ATTAGCATTC
*
23997 AAAAAAATCAAAAAAAAAAAATG
1 AAAAAAAT-TAAAAAAAAAAA-G
*
24020 AAAGAAATTAAAAAAAAAAAG
1 AAAAAAATTAAAAAAAAAAAG
24041 AAAAAAAT
1 AAAAAAAT
24049 ACATCAGATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 8 0.31
22 11 0.42
23 7 0.27
ACGTcount: A:0.83, C:0.02, G:0.06, T:0.10
Consensus pattern (21 bp):
AAAAAAATTAAAAAAAAAAAG
Found at i:27948 original size:188 final size:187
Alignment explanation
Indices: 27624--27986 Score: 690
Period size: 188 Copynumber: 1.9 Consensus size: 187
27614 TCTCTTCATG
27624 CACCTACCCAAAAGGGAATTTCGTGATCAGCAAAGGAATTCAATGTTCTCTTCATGCATGGCTGA
1 CACCTACCCAAAAGGGAATTTCGTGATCAGCAAAGGAATTCAATGTTCTCTTCATGCATGGCTGA
27689 TTGGGTTCATCAAAGGTTTCAAGGTATTTAAATGCTCAAAGGCTAATCATGAGAACATGAAAAGT
66 TTGGGTTCATCAAAGGTTTCAAGGTATTTAAATGCTCAAAGGCTAATCATGAGAACATGAAAAGT
*
27754 GGCTGTTCTGTTTGCTCAAAAACATTAATGCACCTACCAACATTTAAAGAGCTAAAAA
131 GGCTGTTCGGTTTGCTCAAAAACATTAATGCACC-ACCAACATTTAAAGAGCTAAAAA
*
27812 CACCTATCCAAAAGGGAATTTCGTGATCAGCAAAGGAATTCAATGTTCTCTTCATGCATGGCTGA
1 CACCTACCCAAAAGGGAATTTCGTGATCAGCAAAGGAATTCAATGTTCTCTTCATGCATGGCTGA
27877 TTGGGTTCATCAAAGGTTTCAAGGTATTTAAATGCTCAAAGGCTAATCATGAGAACATGAAAAGT
66 TTGGGTTCATCAAAGGTTTCAAGGTATTTAAATGCTCAAAGGCTAATCATGAGAACATGAAAAGT
*
27942 GGCTGTTCGGTTTGCTCAAAAACATTAATGCACCACCCACATTTA
131 GGCTGTTCGGTTTGCTCAAAAACATTAATGCACCACCAACATTTA
27987 TTCCAAGTGC
Statistics
Matches: 172, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
187 10 0.06
188 162 0.94
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (187 bp):
CACCTACCCAAAAGGGAATTTCGTGATCAGCAAAGGAATTCAATGTTCTCTTCATGCATGGCTGA
TTGGGTTCATCAAAGGTTTCAAGGTATTTAAATGCTCAAAGGCTAATCATGAGAACATGAAAAGT
GGCTGTTCGGTTTGCTCAAAAACATTAATGCACCACCAACATTTAAAGAGCTAAAAA
Found at i:29543 original size:216 final size:216
Alignment explanation
Indices: 28645--31688 Score: 2988
Period size: 216 Copynumber: 14.1 Consensus size: 216
28635 GCTCGCATCA
* * ** *
28645 ACAAGTTC-AGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTTTCACATAAAAAAAATTTTTAA
1 ACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGT-AAAAAAGTTTTTAA
* * * * ** *
28709 ATCAAAGACCAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAACTAATCGTGACATCCAGA
64 TTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGAT-GCGATTTCTAGA
* * * ** * ** * * *
28774 GCATGAAATGTTCGGAAAATAAGTCGAAGAAATGGATCACCTTAAATACTCTTAGGAAACGAAGT
128 TCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGT
* * *
28839 TATAAAAATAACTTGTAAATGGTTG
193 TAT-AAAAGAACTAGTAAATGTTTG
* * ** *
28864 ACAAGTTCGGAAGTTCGTACAAGAACCAAGAGAGTGACAATTCTCATGTAAATAAG-TTTTAATT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAAAAAGTTTTTAATT
* * * * *
28928 CAAAGACCAAAAGTTGTTTACAAATTGACAGACTTTTTAGACCAAATTATGTGATTTCCTA-A-G
66 CAAAGACCAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTT-CTAGATC
* * * * * *
28991 A--GAATGTT-TAGAAAATTTGTCGAAGGAATAGATCATCTTGAATACTCTTAGGAACAGAAGTT
130 ATGGAATGTTCGA-AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTT
* * *
29053 ATAAAAGAACTCGTAACTGTTAG
194 ATAAAAGAACTAGTAAATGTTTG
* * ** *
29076 ACAAGTTCGAAAGTTCATCCATGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAAAAAGTTTTTAATT
* * * * * *
29141 TAAAGA-CAAAAGGTTGTTTACAAAAGGACAAACTATTTAAACCAAATGATGCAATTTCCCAG--
66 CAAAGACCAAAA-GTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTT-CTAGAT
* * * * * * * * **
29203 CAAGGAATGTTCGGAAAATTGCTC-AGAGAAATGGATTGTCTTGATTACTTTAAGGAATGGAA-T
129 CATGGAATGTTCGAAAAATTGGTCGA-AGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGT
* **
29266 ATATAAAAGAACTTGTAAAACTTTG
193 -TATAAAAGAACTAGTAAATGTTTG
* * * * * * * *** *
29291 ACTAGGTCGTATGTTCATCCAAGAACCAAGAGAGAAACAATTCTCATGTCAACAAGTACGTAGTT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAAAAAGTTTTTAATT
* * * *
29356 CAGAG-CACAAAAGTTATTTACAAAATTACAAACTTTTTAGACCAAATGATGCGATTTTCTAG-G
66 CAAAGAC-CAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGA-TTTCTAGAT
* * * * *
29419 CATGGAAAGTTCAAAAAATTTGTTGAAGGAATGGATCGTCTTGAATACTCTTAGGAACCGAAGTT
129 CATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTT
29484 ATAAAAGAACTAGTAAATGTTTG
194 ATAAAAGAACTAGTAAATGTTTG
* * * *
29507 ACGAGTTCGAAAGTTCGTCCAAGAACCAATAGAGAAACAATTGTCACGTAAAAAAGTTTTTAATT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAAAAAGTTTTTAATT
* * * *
29572 CAAAGACCAAAAGTTATTTATAAAATGACAAACTATTTAGACCAAATTATGCGATTTCCTA-A-C
66 CAAAGACCAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTT-CTAGATC
* ** * * * * *
29635 ATGGAATGTTCGAAAAATTGCTAAAATGAATGCATCGTCTTTAATACTCTCATGAATCGAAGTTA
130 ATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTA
*
29700 TAAAAGAACTCA-TAAATGTTTA
195 TAAAAGAACT-AGTAAATGTTTG
* * * **
29722 ACCAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC-TCATAAAAAAAATTTTAAT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAT-GTAAAAAAGTTTTTAAT
* * *
29786 TCAAAGACCAAAAGTTGTTTACAAAATGACAAAC-TATTA-ACCAAATGATGTGATTTCTCGATC
65 TCAAAGACCAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCTAGATC
* * * *
29849 ATGGAATGTTCGACAAATTGGTCGAAGGAATGGATCGTCTTGACTACTATCAGGAATCGAAGTTA
130 ATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTA
*
29914 TTAAAGAACTAGTAAATGTTTG
195 TAAAAGAACTAGTAAATGTTTG
* * * * *
29936 ACAAGTTC-AGAACTTCATCCAAGAACTAAGAGACAAATAATTCTCATGTAAAAAAGTTTTTAAT
1 ACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAAAAAGTTTTTAAT
* * *
30000 TCAAAGACCAAAAGTTATTTACAAAATGACGAACTATTTT-GACCAAATGATGTGATTTCCT-GA
65 TCAAAGACCAAAAGTTGTTTACAAAATGACAAACT-TTTTAGACCAAATGATGCGATTT-CTAGA
* * * *
30063 TCATGGAATCTTCGGAAAATTGGTCAAAGGAATGGATCGTCTTTAATACTCTCAGGAACCGAAGT
128 TCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGT
* *
30128 TATAAAAGAACTCGTAAATATTT-
193 TATAAAAGAACTAGTAAATGTTTG
* * * *
30151 AGCAAGTTCTG-AAGTTTGTCCAAGAACCAAGAGAGAAAAAATTCTC-TCGTAAAAAAATTTTCA
1 A-CAAGTTC-GAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAT-GTAAAAAAGTTTTTA
* * * * **
30214 ACTCAAAGACCAAAACTTGTTTACAAAATGACAAACTTTTTAGACAAAATGATGAGATTTCCCGA
63 ATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCTAGA
* * * * *
30279 TCATTGAATGTTCGAAAAATTGGTCAAAGGAATGGATCATCTTGACTACTATCAGGAACCGAAGT
128 TCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGT
30344 TATAAAAGAACTAGTAAATGTTTG
193 TATAAAAGAACTAGTAAATGTTTG
* * ** * *
30368 ACAACTTC-AGAAGTTCGTCCAAGAACTAAGAGAGAAGGAATTCTAACGTAAAAAAGTTTTTAAT
1 ACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAAAAAGTTTTTAAT
*
30432 TCAAAGACCAAAAGTTATTTACAAAATGACAAACTATTTT-GACCAAATGATGCGATTTCTCA-A
65 TCAAAGACCAAAAGTTGTTTACAAAATGACAAACT-TTTTAGACCAAATGATGCGATTTCT-AGA
* * *
30495 TCATGGAATCTTC-AGAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTCTTAGGAACCGAAG
128 TCATGGAATGTTCGA-AAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCG-A-
* *
30559 TAGTTATAAAAGAACTTGTAAATGTTTA
190 -AGTTATAAAAGAACTAGTAAATGTTTG
* * * * *
30587 ACCAGTTTGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTC-TCGTAAAAAATTTTTTAAT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAT-GTAAAAAAGTTTTTAAT
* * **
30651 TCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGCGATTTCCCGATC
65 TCAAAGACCAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCTAGATC
* * ** * *
30716 ATGGAATGTTCAAAAAATTGGTAGAACAAATGGATCATCTTGAATACTATCAGGAACCGAAGTTA
130 ATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTA
*
30781 TAAAAGAACTAGTAAATGTTTA
195 TAAAAGAACTAGTAAATGTTTG
* * * * **
30803 ACAAGTTCAAAACTTCATCCAAGAACCAAAAGAGAAAGGATTCTCATGTAAAAAAGTTTTTAATT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAAAAAGTTTTTAATT
* * * *
30868 CAAAGACCAAAAGTTATTTACAAAGTGATAAACTATTTT-GACCAAATGATGCAATTTCCT-GAT
66 CAAAGACCAAAAGTTGTTTACAAAATGACAAACT-TTTTAGACCAAATGATGCGATTT-CTAGAT
* * * * * *
30931 CATGGAGTCTTCGGAAAATTGGTCAAAGGAATGGATCGTCTTGAATTCTCTCAGGAACTGAAGTT
129 CATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTT
*
30996 ATAAAAGAACTTGTAGAA-GTTTG
194 ATAAAAGAACTAGTA-AATGTTTG
* * * * * ** * *
31019 ACTAGTTC-ATATGTTTGTCCATGAACCAAGAGGGAAACAATTCTCACATAAATAAGTATTTAAT
1 ACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAAAAAGTTTTTAAT
** * * * * * * *
31083 TCAAAGGTCAAGAGTTGTTTACTAAATGACAAACTATTAAGATCAAATGATGCGATTTCTCGGGT
65 TCAAAGACCAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCT-AGAT
* * * * *
31148 -ATGGAATTTTTGAAAAATTGGTCGAAGGAAAGGACCGTCTTTAATACTCTCAGGAACCGAAGTT
129 CATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTT
* *
31212 ATAAAAGAAGTCGTAAATGTTTG
194 ATAAAAGAACTAGTAAATGTTTG
* * * * * *** * *
31235 ACGAGTT-TAGAAGTTTGTCCGATAACCATTTGAGAAACAATTCTCAAGTAAAAAAGTTTTTCAT
1 ACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAAAAAGTTTTTAAT
* * * *
31299 TCAAAGACCAAATGTTGTTTACAAAATGACAAACTATTTAGACCAAAGGATGCAATTTCTCAG--
65 TCAAAGACCAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCT-AGAT
* * * * * * * * *
31362 CATTGAATGATCAAAAAATTGCTCAAAGGAATGGATTGTCTTGAATACTTTAAGGAACTGAAGTT
129 CATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTT
*
31427 ATAAAAGAACTTGTAAAAT-TTTG
194 ATAAAAGAACTAGT-AAATGTTTG
* * * * * * * * * *
31450 ACTAGTTTGTATGGTCTTCCAAGAACTAAGAGGGAAGA-AATTCTCACGTAAAAAAGTGTTTAAT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAA-ACAATTCTCATGTAAAAAAGTTTTTAAT
* * * *
31514 TCAAAG-CATAAAAGTTTTTTTACAAAATGACAAACTATTTT-GACCAAATGATGTGATTTCTCG
65 TCAAAGAC-CAAAAG-TTGTTTACAAAATGACAAACT-TTTTAGACCAAATGATGCGATTTCTAG
* * * * * * * * * *
31577 ATCATGAAATGTTCGACAAATTGGTTGAAGGAATGAATCATCTTGACTACTATTAGTAATCGAAG
127 ATCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAG
*
31642 TTATCAAAGAACTAGTAAATGTTTG
192 TTATAAAAGAACTAGTAAATGTTTG
* * *
31667 ACAAGTTTGAAACTTCATCCAA
1 ACAAGTTCGAAAGTTCGTCCAA
31689 AAGTTTTTAA
Statistics
Matches: 2327, Mismatches: 426, Indels: 146
0.80 0.15 0.05
Matches are distributed among these distances:
212 71 0.03
213 122 0.05
214 163 0.07
215 456 0.20
216 1126 0.48
217 158 0.07
218 9 0.00
219 221 0.09
220 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (216 bp):
ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAAAAAGTTTTTAATT
CAAAGACCAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGCGATTTCTAGATCA
TGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCAGGAACCGAAGTTAT
AAAAGAACTAGTAAATGTTTG
Found at i:30249 original size:20 final size:20
Alignment explanation
Indices: 30226--30265 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
30216 TCAAAGACCA
30226 AAACTTGTTT-ACAAAATGAC
1 AAACTT-TTTAACAAAATGAC
30246 AAACTTTTTAGACAAAATGA
1 AAACTTTTTA-ACAAAATGA
30266 TGAGATTTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 3 0.17
20 6 0.33
21 9 0.50
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.30
Consensus pattern (20 bp):
AAACTTTTTAACAAAATGAC
Found at i:31825 original size:185 final size:186
Alignment explanation
Indices: 31501--31858 Score: 533
Period size: 185 Copynumber: 1.9 Consensus size: 186
31491 TCTCACGTAA
* *
31501 AAAAGTGTTTAATTCAAAGCATAAAAGTTTTTTTACAAAATGACAAACTATTTTGACCAAATGAT
1 AAAAGTGTTTAATTCAAAGCACAAAAGTTTTTTTACAAAATGACAAACTATTTAGACCAAATGAT
* * * * * **
31566 GTGATTTCTCGATCATGAAATGTTCGACAAATTGGTTGAAGGAATGAATCATCTTGACTACTATT
66 GCGATTTCCCGAGCATGAAATGTTCAAAAAATTGGTCAAAGGAATGAATCATCTTGACTACTATT
* * *
31631 AGTAATCGAAGTTATCAAAGAACTAGTAAATGTTTGACAAGTTTGAAACTTCATCC
131 AGGAATCGAAGTTATAAAAGAACTAGGAAATGTTTGACAAGTTTGAAACTTCATCC
*
31687 AAAAGTTTTTAATTCAAAG-ACCAAAAG-TTTTTTACAAAATGACAAACGT-TTTAGACCAAATG
1 AAAAGTGTTTAATTCAAAGCA-CAAAAGTTTTTTTACAAAATGACAAAC-TATTTAGACCAAATG
* *
31749 ATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGGTCAAAGGAATGGATCATCTTGACTACTA
64 ATGCGATTTCCCGAGCATGAAATGTTCAAAAAATTGGTCAAAGGAATGAATCATCTTGACTACTA
*
31814 TTTGGAATCGAAGTTATAAAAGAACTAGGAAATGTTTGACAAGTT
129 TTAGGAATCGAAGTTATAAAAGAACTAGGAAATGTTTGACAAGTT
31859 CAGTACTTCA
Statistics
Matches: 154, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
185 130 0.84
186 24 0.16
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.32
Consensus pattern (186 bp):
AAAAGTGTTTAATTCAAAGCACAAAAGTTTTTTTACAAAATGACAAACTATTTAGACCAAATGAT
GCGATTTCCCGAGCATGAAATGTTCAAAAAATTGGTCAAAGGAATGAATCATCTTGACTACTATT
AGGAATCGAAGTTATAAAAGAACTAGGAAATGTTTGACAAGTTTGAAACTTCATCC
Found at i:32064 original size:215 final size:215
Alignment explanation
Indices: 31687--32318 Score: 858
Period size: 216 Copynumber: 2.9 Consensus size: 215
31677 AACTTCATCC
*
31687 AAAAGTTTTTAATTCAAAGACCAAAAGTTTTTTACAAAATGACAAACGTTTTAGACCAAATGATG
1 AAAAGTTTTTAATTCAAAGACCAAAAGTTTTTTACAAAATGACAAACTTTTTAGACCAAATGATG
* * * * * *
31752 CGATTTCCCGAGCATGGAATGTTCAAAAAATTGGTCAAAGGAATGGATCATCTTGACTACTATTT
66 CGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACT-CTC
* * * * * * *
31817 GGAATCGAAGTTATAAAAGAACT-AGGAAATGTTTGACAAGTTC-AGTACTTCATCCAAGAACCG
130 AGAAACGAAGTTATAAAAGAACTCA-TAAATGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCA
31880 AGAGAGATA-CAATTCGCACGT-A
193 AGAGAGA-ACCAATTCGCACGTAA
* * * *
31902 AAAAGTTTTTAATTCAAAGACTAAATGTTGTTTATAAAATGACAAACTTTTTAGACCAAATGATG
1 AAAAGTTTTTAATTCAAAGACCAAAAGTTTTTTACAAAATGACAAACTTTTTAGACCAAATGATG
* *
31967 CGATTTCCCAAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCCTGAATACTCTCA
66 CGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCA
* * *
32032 GAAACCAAGGTTATAAAAGAACTCATAAATGTTTGACAAGTTCGAAAGTTTGTCTAAGAACCAAG
131 GAAACGAA-GTTATAAAAGAACTCATAAATGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAG
*
32097 AGAGAACCAATTCTCACGTAA
195 AGAGAACCAATTCGCACGTAA
* * *
32118 AAAAGTTTTTAAATCAAAGACCAAAAGTTTTTTACAACATGACAAACTTTTTAGACCAAGTGATG
1 AAAAGTTTTTAATTCAAAGACCAAAAGTTTTTTACAAAATGACAAACTTTTTAGACCAAATGATG
* * * ** * *
32183 TGATTTCCCGAGAATGAAATGTTCGAAAAATAAGTCGAAGGAATAGATCGTCTTAAATACTCTCA
66 CGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCA
* *
32248 GGAACTGAAGTTATAAAAGAACTCGTAAATGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAG
131 GAAAC-GAAGTTATAAAAGAACTCATAAATGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAG
32313 AGAGAA
195 AGAGAA
32319 ATAATTTGAT
Statistics
Matches: 366, Mismatches: 45, Indels: 11
0.87 0.11 0.03
Matches are distributed among these distances:
214 8 0.02
215 176 0.48
216 180 0.49
217 2 0.01
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (215 bp):
AAAAGTTTTTAATTCAAAGACCAAAAGTTTTTTACAAAATGACAAACTTTTTAGACCAAATGATG
CGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTCTCA
GAAACGAAGTTATAAAAGAACTCATAAATGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGA
GAGAACCAATTCGCACGTAA
Found at i:33331 original size:32 final size:32
Alignment explanation
Indices: 33295--33357 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
33285 GCCATCCATA
* *
33295 CATGTACCTGAAATATATTAATCAACTAATTT
1 CATGTACCTGAAACACATTAATCAACTAATTT
*
33327 CATGTACCTGAAACACATTAATCAGCTAATT
1 CATGTACCTGAAACACATTAATCAACTAATT
33358 AATTTCAGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (32 bp):
CATGTACCTGAAACACATTAATCAACTAATTT
Found at i:35637 original size:80 final size:79
Alignment explanation
Indices: 35546--35702 Score: 251
Period size: 80 Copynumber: 2.0 Consensus size: 79
35536 ACTAATTTCA
* * * *
35546 TTTTAACTCTTGTAGGGAAGCTAATGAGTCTTGTCTCTTCATTAGGATCTGAAGTAGTTAAAAAG
1 TTTTAACTCTTGTAGGAAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGAAGTAGCTAAAAAG
35611 GCATGGCAATTTCGT
66 GCATGGC-ATTTCGT
* *
35626 TTTTAACTCTTGTAGGAAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGCTGAAAAG
1 TTTTAACTCTTGTAGGAAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGAAGTAGCTAAAAAG
35691 GCATGGCATTTC
66 GCATGGCATTTC
35703 TCCTTAATGA
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
79 5 0.07
80 66 0.93
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.35
Consensus pattern (79 bp):
TTTTAACTCTTGTAGGAAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGAAGTAGCTAAAAAG
GCATGGCATTTCGT
Found at i:36241 original size:48 final size:47
Alignment explanation
Indices: 36143--36243 Score: 132
Period size: 48 Copynumber: 2.1 Consensus size: 47
36133 CAAGGCATTT
* * * *
36143 AACAAAGATGCATTTAACAAACAAAACACTTAATGATGCAGATTATTA
1 AACAAAGATGCATTTAACAAAAAAAACACTTAATGAAGCA-ATAAATA
36191 AACAAAGATGCATTTAACAAAAAAAAAACACTTAATGAAGC-ATAAATA
1 AACAAAGATGCATTTAAC--AAAAAAAACACTTAATGAAGCAATAAATA
36239 AACAA
1 AACAA
36244 CTTTATTTAT
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
48 28 0.60
50 19 0.40
ACGTcount: A:0.56, C:0.14, G:0.09, T:0.21
Consensus pattern (47 bp):
AACAAAGATGCATTTAACAAAAAAAACACTTAATGAAGCAATAAATA
Found at i:38293 original size:434 final size:430
Alignment explanation
Indices: 36908--39051 Score: 2400
Period size: 434 Copynumber: 5.0 Consensus size: 430
36898 TTTAAGGAAC
* * * * * *
36908 CGAAGTTATAAAAGAACTTGTAAAA-TTTAGACCAGTTTGTATGTTTGTCCTAGAACCAAGAGGG
1 CGAAGTTATAAAAGAACTTGTAAAAGTTTA-ACCAGTTCGAAAGTTCGTCCAAGAACCAAGAGAG
* * * *
36972 AAACAATTCTCACGTAAAAAAGTATTTAGTTCAGAGCACAAAAGTTGTTTACAAAATGACAAGCT
65 AAACAATTCTCACGT-AAAAAGTATTTAATTCAAAGAACAAAAGTTGTTTACAAAATGACAAACT
* * *
37037 ATTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTTGAAATATTGGTCGAAGGGATGGAT
129 ATTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGAT
* * * * * *
37102 GGTCCTAACTACTACCAGGAACCAAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCATAAG
194 CGTCTTGACTACTATCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTG-CAAGTTCAAAAG
* * * *
37167 TTCGTCTAAGAACCAAGAGAGAAAGAATTCTAACGT-AAAAAG-TTTTAATCCAAACACCAAAAG
258 TTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAAAAAGTTTTTAATTCAAAGACCAAAAG
* *
37230 TTATTTACAAAATGACAAACTATTTTGACCAAATGATGCGATTT-CCGAATCATGGAATCTTCAG
323 TTATTTACAAAATGACAAACTATTTTGACCAAATGATGCGATTTCCCG-GTCATGGAATATTCA-
* * *
37294 AAAAA-TGGTCAACGGAATGGATCGTCCTGAATACTCTCAGGAAT
386 AAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAAGAAT
* * * * * * *
37338 CAAAGTTATAATAGAACTTGTAAAAGTTTGACTAGTTCGTATGTCCGTCCAAG-----A-AG-GA
1 CGAAGTTATAAAAGAACTTGTAAAAGTTTAACCAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGA
*
37396 AACAATTCTCACGTAAATAAGTATTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
66 AACAATTCTCACGTAAA-AAGTATTTAATTCAAAGAACAAAAGTTGTTTACAAAATGACAAACTA
* * * * * * * ** *
37461 TTTAGACCAAATGATACGATTTCTC-AGCATGGAATATTCAAAAAATTGCTCAAATCAATGGA-A
130 TTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATC
* * * * * * **
37524 GATTTTGAATACTTTAAGGAACC-AGAGTTATAAAAGAACTTGTAAAAT-TTTGACTAGTTTGTA
195 G-TCTTGACTACTATCAGGAACCGA-AGTTATAAAAGAACTAGT-AAATGTTTG-CAAG-TTCAA
* * * * * * * *
37587 TA-TT-GTCCTATAACCAAGAGGGAAACAATTCTCACATAAAAAAGTATTTAGTTCAAAG-CACA
255 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAAAAAGTTTTTAATTCAAAGAC-CA
* * * * * * *
37649 AAAGTTGTTTACAAATTGACAAGCTATTTAGACCAAATGATACGATTTCTCAG-CATGGAATATT
319 AAAGTTATTTACAAAATGACAAACTATTTTGACCAAATGATGCGATTTCCCGGTCATGGAATATT
* ** * *
37713 CAAAAAATTGCTCAAATCAATGGAACGTCTTGAATACT-TTAAGGAA-
384 CAAAAAATTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAA-GAAT
* * * * * * * * *
37759 CCAGAGTTATAAATGAACTTGTAAAATTTTGACCAGTTTGCATGTTCGTTCAAGAACCAAGAGGG
1 CGA-AGTTATAAAAGAACTTGTAAAAGTTTAACCAGTTCGAAAGTTCGTCCAAGAACCAAGAGAG
* * * * *
37824 AAGCAATTCTCACATAAAAAAGTATTTAGTTCAAAGAACAAAAGTTGTTTACAAATTGACAAGCT
65 AAACAATTCTCACGT-AAAAAGTATTTAATTCAAAGAACAAAAGTTGTTTACAAAATGACAAACT
* *
37889 ATTTAGACCAAATAATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCGAAGGAATAGAT
129 ATTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGAT
* * *
37954 CGTCTTGACTACTATCAGGAACCGAAGTTATAGAAGAACTAGTTAATGTTTAGCACGTTCAAAAG
194 CGTCTTGACTACTATCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTT-GCAAGTTCAAAAG
* * *
38019 TTCGTCCAAGAACCAGGAGAGAAAGAATTCTAACGTAAAAAAGTTTTTAATTCAAAGGCCAAAAG
258 TTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAAAAAGTTTTTAATTCAAAGACCAAAAG
* * * *
38084 TTATTTACAAAATGACAAACTATTTTGACCAAATAATGCGATTTCCCGGTCATGGAATCTGCGAA
323 TTATTTACAAAATGACAAACTATTTTGACCAAATGATGCGATTTCCCGGTCATGGAATATTCAAA
38149 AAATTGGTCAAAGGAATGGATCGTCTTGAAAATACTCTCAAGAAT
388 AAATTGGTCAAAGGAATGGATCGTCTTG--AATACTCTCAAGAAT
*
38194 CGAAGTTATAAAAGAACTTGTAAACGTTTAACCAGTTC-AGAAGTTCGTCCAAGAACCAAGAGAG
1 CGAAGTTATAAAAGAACTTGTAAAAGTTTAACCAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAG
** * *
38258 AAACAATTCTTTCGTAACAAAGTTTTTAATTCAAAG-ACAAAAAGTTGTTTACGAAATGACAAAC
65 AAACAATTCTCACGTAA-AAAGTATTTAATTCAAAGAAC-AAAAGTTGTTTACAAAATGACAAAC
* * *
38322 TATTTAGACCAAATGATGTGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCGAGGGAATTGA
128 TATTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGA
* **
38387 TCATCTTGACTACTATCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAA
193 TCGTCTTGACTACTATCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTG-CAAGTTCAAAA
* * * * * * *
38452 GTTCGTCCAAGAAGCAACAGAGATATAATTCTAATGTAAAAAAGTTTTTAATACAAAAACCAAAA
257 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAAAAAGTTTTTAATTCAAAGACCAAAA
* * *** * *
38517 GCTATTTACAAAATGACAAATTATTTTGACCAAATGATGCGATTTCCAAATAATGGAATATTCAG
322 GTTATTTACAAAATGACAAACTATTTTGACCAAATGATGCGATTTCCCGGTCATGGAATATTCAA
* *
38582 AAAATTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAGGAAC
387 AAAATTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAAGAAT
* * * * **
38626 CGGAGTTATAAAAGAACCTGTAAATGTTTTAACAAGTTCGAAAGTTCGTCCAAGAACCAATTGAG
1 CGAAGTTATAAAAGAACTTGTAAAAG-TTTAACCAGTTCGAAAGTTCGTCCAAGAACCAAGAGAG
** * * *
38691 AAACTTTTCTCTCGTAAAAAGGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
65 AAACAATTCTCACGTAAAAA-GTATTTAATTCAAAGAACAAAAGTTGTTTACAAAATGACAAACT
*
38756 ATTTAGACCAAAATGATGCGATATCCCGATCATGGAATGTTCGAAAAATTGGTCGAA-GAAGTGG
129 ATTTAGACC-AAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCGAAGGAA-TGG
* * ** **
38820 ATCGTCTTGACTACTATTAGGAACCGAAGTTATAAAGGATTTAGTAAATGTTTGGCAAGTTCGGA
192 ATCGTCTTGACTACTATCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTT-GCAAGTTCAAA
* ** * *
38885 ACTTTATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTTAATTCAATGACCAA
256 AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAAAAAG-TTTTTAATTCAAAGACCAA
* ** * *
38950 TAGCTT-TTTACAAAATGACAAACGT-TTTACACCGAATGATGCGATTTCCCGAG-CATGGAATG
320 AAG-TTATTTACAAAATGACAAAC-TATTTTGACCAAATGATGCGATTTCCCG-GTCATGGAATA
* *
39012 TTCAAAAAATTGGTCAAAGGAATGGATCATCTTGACTACT
382 TTCAAAAAATTGGTCAAAGGAATGGATCGTCTTGAATACT
39052 ATCTGGAACC
Statistics
Matches: 1437, Mismatches: 228, Indels: 93
0.82 0.13 0.05
Matches are distributed among these distances:
421 37 0.03
422 159 0.11
423 142 0.10
424 3 0.00
425 1 0.00
427 1 0.00
428 2 0.00
429 86 0.06
430 113 0.08
431 98 0.07
432 76 0.05
433 104 0.07
434 508 0.35
435 105 0.07
436 2 0.00
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (430 bp):
CGAAGTTATAAAAGAACTTGTAAAAGTTTAACCAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGA
AACAATTCTCACGTAAAAAGTATTTAATTCAAAGAACAAAAGTTGTTTACAAAATGACAAACTAT
TTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCG
TCTTGACTACTATCAGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGCAAGTTCAAAAGTTC
GTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTA
TTTACAAAATGACAAACTATTTTGACCAAATGATGCGATTTCCCGGTCATGGAATATTCAAAAAA
TTGGTCAAAGGAATGGATCGTCTTGAATACTCTCAAGAAT
Found at i:38317 original size:218 final size:216
Alignment explanation
Indices: 36902--39067 Score: 2280
Period size: 216 Copynumber: 10.1 Consensus size: 216
36892 AGATACTTTA
* * * * * *
36902 AGGAACCGAAGTTATAAAAGAACTTGTAAAAT-TTAGACCAGTT-TGTATGTTTGTCCTAGAACC
1 AGGAACCGAAGTTATAAAAGAACTTGT-AAATGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACC
* * * *
36965 AAGAGGGAAACAATTCTCACGTAAAAAAGTATTTAGTTCAGAG-CACAAAAGTTGTTTACAAAAT
64 AAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGAC-CAAAAGTTGTTTACAAAAT
* * * *
37029 GACAAGCTATTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTTGAAATATTGGTCGAAG
128 GACAAACTATTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAG
* * *
37094 GGATGGATGGTCCT-AACTACTAC-C
193 GAATGGATCGTCTTGAA-TACT-CTC
* * * *
37118 AGGAACCAAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCATAAGTTCGTCTAAGAACCAA
1 AGGAACCGAAGTTATAAAAGAACTTGTAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAA
* * * * *
37183 GAGAGAAAGAATTCTAACGT-AAAAAG-TTTTAATCCAAACACCAAAAGTTATTTACAAAATGAC
66 GAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC
* * *
37246 AAACTATTTTGACCAAATGATGCGATTT-CCGAATCATGGAATCTTCAGAAAAA-TGGTCAACGG
131 AAACTATTTAGACCAAATGATGCGATTTCCCG-ATCATGGAATGTTC-GAAAAATTGGTCAAAGG
*
37309 AATGGATCGTCCTGAATACTCTC
194 AATGGATCGTCTTGAATACTCTC
* * * * * * *
37332 AGGAATCAAAGTTATAATAGAACTTGTAAAAGTTTGACTAGTTC-GTA--T-GTCC--G-TCCAA
1 AGGAACCGAAGTTATAAAAGAACTTGTAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAA
* *
37390 GA-AGGAAACAATTCTCACGTAAATAAGTATTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
66 GAGA-GAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* * * * * * **
37454 CAAACTATTTAGACCAAATGATACGATTTCTC-AGCATGGAATATTCAAAAAATTGCTCAAATCA
130 CAAACTATTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGA
* * * *
37518 ATGGA-AGATTTTGAATACTTTA
195 ATGGATCG-TCTTGAATACTCTC
* * * *
37540 AGGAACC-AGAGTTATAAAAGAACTTGTAAAAT-TTTGACTAGTT-TGTATA-TT-GTCCTATAA
1 AGGAACCGA-AGTTATAAAAGAACTTGT-AAATGTTTGACAAGTTCAG-A-AGTTCGTCCAAGAA
* * * *
37600 CCAAGAGGGAAACAATTCTCACATAAAAAAGTATTTAGTTCAAAG-CACAAAAGTTGTTTACAAA
62 CCAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGAC-CAAAAGTTGTTTACAAA
* * * * * * * *
37664 TTGACAAGCTATTTAGACCAAATGATACGATTTCTC-AGCATGGAATATTCAAAAAATTGCTCAA
126 ATGACAAACTATTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAA
** * * *
37728 ATCAATGGAACGTCTTGAATACTTTA
191 AGGAATGGATCGTCTTGAATACTCTC
* * * * *
37754 AGGAACC-AGAGTTATAAATGAACTTGTAAAAT-TTTGACCAGTT-TGCATGTTCGTTCAAGAAC
1 AGGAACCGA-AGTTATAAAAGAACTTGT-AAATGTTTGACAAGTTCAG-AAGTTCGTCCAAGAAC
* * * * * * *
37816 CAAGAGGGAAGCAATTCTCACATAAAAAAGTATTTAGTTCAAAGAACAAAAGTTGTTTACAAATT
63 CAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT
* * *
37881 GACAAGCTATTTAGACCAAATAATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCGAAG
128 GACAAACTATTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAG
* * *
37946 GAATAGATCGTCTTGACTACTATC
193 GAATGGATCGTCTTGAATACTCTC
* * * * *
37970 AGGAACCGAAGTTATAGAAGAACTAGTTAATGTTT-AGCACGTTCAAAAGTTCGTCCAAGAACCA
1 AGGAACCGAAGTTATAAAAGAACTTGTAAATGTTTGA-CAAGTTCAGAAGTTCGTCCAAGAACCA
* * * * *
38034 GGAGAGAAAGAATTCTAACGTAAAAAAGTTTTTAATTCAAAGGCCAAAAGTTATTTACAAAATGA
65 AGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* * * * *
38099 CAAACTATTTTGACCAAATAATGCGATTTCCCGGTCATGGAATCTGCGAAAAATTGGTCAAAGGA
130 CAAACTATTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGA
38164 ATGGATCGTCTTGAAAATACTCTC
195 ATGGATCGTCTTG--AATACTCTC
* * * * *
38188 AAGAATCGAAGTTATAAAAGAACTTGTAAACGTTTAACCAGTTCAGAAGTTCGTCCAAGAACCAA
1 AGGAACCGAAGTTATAAAAGAACTTGTAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAA
** * * *
38253 GAGAGAAACAATTCTTTCGTAACAAAGTTTTTAATTCAAAGACAAAAAGTTGTTTACGAAATGAC
66 GAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC
* * *
38318 AAACTATTTAGACCAAATGATGTGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCGAGGGAA
131 AAACTATTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAA
* * * *
38383 TTGATCATCTTGACTACTATC
196 TGGATCGTCTTGAATACTCTC
* * *
38404 AGGAACCGAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAAGAAGCAA
1 AGGAACCGAAGTTATAAAAGAACTTGTAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAA
* * * * * * * * *
38469 CAGAGATATAATTCTAATGTAAAAAAGTTTTTAATACAAAAACCAAAAGCTATTTACAAAATGAC
66 GAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC
* * ** * *
38534 AAATTATTTTGACCAAATGATGCGATTTCCAAATAATGGAATATTC-AGAAAATTGGTCAAAGGA
131 AAACTATTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGA-AAAATTGGTCAAAGGA
38598 ATGGATCGTCTTGAATACTCTC
195 ATGGATCGTCTTGAATACTCTC
* * *
38620 AGGAACCGGAGTTATAAAAGAACCTGTAAATGTTTTAACAAGTTC-GAAAGTTCGTCCAAGAACC
1 AGGAACCGAAGTTATAAAAGAACTTGTAAATG-TTTGACAAGTTCAG-AAGTTCGTCCAAGAACC
** ** * *
38684 AATTGAGAAACTTTTCTCTCGTAAAAAGGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG
64 AAGAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG
* *
38749 ACAAACTATTTAGACCAAAATGATGCGATATCCCGATCATGGAATGTTCGAAAAATTGGTCGAA-
129 ACAAACTATTTAGACC-AAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAG
* * *
38813 GAAGTGGATCGTCTTGACTACTATT
193 GAA-TGGATCGTCTTGAATACTCTC
* * * * * **
38838 AGGAACCGAAGTTAT-AAAGGATTTAGTAAATGTTTGGCAAGTTCGGAACTTTATCCAAGAACCA
1 AGGAACCGAAGTTATAAAAGAACTT-GTAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCA
* *
38902 AGAGAGAAACAATTCTCACGTAAAAAAGTTTTTTAATTCAATGACCAATAGCTT-TTTACAAAAT
65 AGAGAGAAACAATTCTCACGTAAAAAAG-TTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAAT
* * * *
38966 GACAAACGT-TTTACACCGAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGGTCAAA
128 GACAAAC-TATTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAA
* * *
39030 GGAATGGATCATCTTGACTACTATC
192 GGAATGGATCGTCTTGAATACTCTC
*
39055 TGGAACCGAAGTT
1 AGGAACCGAAGTT
Statistics
Matches: 1654, Mismatches: 248, Indels: 95
0.83 0.12 0.05
Matches are distributed among these distances:
206 1 0.00
207 27 0.02
208 75 0.05
209 62 0.04
210 5 0.00
211 6 0.00
213 6 0.00
214 317 0.19
215 124 0.07
216 494 0.30
217 222 0.13
218 310 0.19
219 5 0.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (216 bp):
AGGAACCGAAGTTATAAAAGAACTTGTAAATGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAA
GAGAGAAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC
AAACTATTTAGACCAAATGATGCGATTTCCCGATCATGGAATGTTCGAAAAATTGGTCAAAGGAA
TGGATCGTCTTGAATACTCTC
Done.