genome.fa.s14073.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014073.1 Kokia drynarioides strain JFW-HI SEQ_129104, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47510

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68--137	36	1.9	36	94	0	122	25	4	18	51	1.64
1359--1443	43	2.0	43	86	4	118	30	11	10	47	1.74
2010--2145	45	3.0	45	90	2	202	32	26	21	19	1.97
2138--2183	21	2.2	21	84	0	56	21	32	17	28	1.96
2319--2378	28	2.2	27	85	11	86	43	20	11	25	1.85
5648--5713	4	16.2	4	80	9	71	1	31	0	66	1.01
5647--5713	25	2.7	24	77	11	73	1	32	0	65	1.02
13051--13110	18	3.3	18	72	25	63	25	6	28	40	1.80
13069--13140	21	3.8	20	71	21	64	27	5	29	37	1.79
13027--13136	36	3.1	36	89	0	166	26	9	28	36	1.87
13139--13169	6	5.2	6	100	0	62	48	0	35	16	1.46
18388--18446	24	2.5	24	82	0	73	25	10	13	50	1.72
19251--19279	15	1.9	15	100	0	58	72	6	6	13	1.26
23247--23277	16	1.9	16	100	0	62	38	12	9	38	1.77
24165--24219	28	2.0	28	100	0	110	58	10	3	27	1.49
29119--29169	24	2.1	24	85	0	66	25	7	9	56	1.58
29133--29179	24	2.0	24	82	0	58	27	8	12	51	1.69
31114--31168	24	2.3	24	90	6	85	27	14	9	49	1.73
31817--31858	2	21.0	2	95	0	75	47	0	2	50	1.14
32480--32528	22	2.1	23	82	14	57	71	0	4	24	1.03
32480--32529	21	2.3	22	82	3	57	70	0	4	26	1.05
37263--37322	31	1.9	31	96	0	111	46	6	8	38	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37364--37415	27	1.9	27	84	0	68	44	13	3	38	1.62
42808--42833	7	3.7	7	100	0	52	73	0	0	26	0.84
43768--43822	19	3.1	17	70	29	51	52	0	1	45	1.11
44207--44376	43	4.0	43	88	3	220	30	28	16	24	1.96
44199--44376	85	2.1	85	86	4	243	30	29	16	24	1.96
44227--44376	43	3.5	43	89	0	221	30	30	14	25	1.95

Tables:   1

The End!