genome.fa.s14077.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014077.1 Kokia drynarioides strain JFW-HI SEQ_129108, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  234618

Tables:   1   2   

This is table  1  of  2  ( 121 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44--68	9	2.8	9	100	0	50	80	8	12	0	0.92
12072--12138	27	2.5	27	69	9	64	58	0	4	37	1.19
12089--12123	16	2.1	18	89	10	56	54	0	0	45	0.99
15792--15842	18	2.9	18	85	2	68	47	0	0	52	1.00
15792--15847	21	2.9	19	79	10	62	48	0	0	51	1.00
15791--15848	18	3.3	18	76	11	66	46	0	0	53	1.00
30965--32734	156	11.5	155	90	3	2677	27	18	21	33	1.96
30965--32734	310	5.7	309	92	3	2668	27	18	21	33	1.96
34357--34402	6	7.7	6	80	0	56	2	65	10	21	1.35
34357--34402	18	2.6	18	85	0	65	2	65	10	21	1.35
37655--37688	6	5.7	6	100	0	68	64	35	0	0	0.94
39306--39331	12	2.2	12	100	0	52	69	7	0	23	1.14
48451--48476	6	4.3	6	100	0	52	53	15	0	30	1.42
49039--49101	33	1.9	33	83	6	83	28	14	7	49	1.71
49928--49970	4	10.8	4	85	9	52	79	0	20	0	0.74
49966--49995	9	3.3	9	90	0	51	53	0	46	0	1.00
50171--50195	12	2.1	12	100	0	50	48	0	0	52	1.00
50355--50395	21	2.0	21	85	4	57	24	2	14	58	1.49
51723--51807	43	2.0	43	83	4	109	30	11	11	45	1.76
52380--52510	45	2.9	45	87	0	181	31	28	21	19	1.97
55698--55733	4	8.8	4	87	6	54	0	27	0	72	0.85
55705--55732	13	2.2	13	100	0	56	0	21	0	78	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56456--56501	24	1.9	24	95	0	83	13	15	6	65	1.46
56836--56878	21	2.0	21	100	0	86	39	4	9	46	1.57
58360--58415	27	2.1	27	82	0	67	33	8	5	51	1.56
59234--59262	15	1.9	15	100	0	58	6	27	0	65	1.18
61028--61351	29	11.1	28	70	16	155	35	3	25	34	1.74
60938--61191	58	4.3	59	79	9	259	37	5	24	32	1.78
61027--61351	58	5.6	60	79	10	277	36	3	25	34	1.74
61231--61370	29	4.8	29	75	9	108	37	2	23	37	1.67
63126--63221	17	5.6	17	74	7	77	52	6	5	36	1.49
63291--63328	13	3.1	13	77	14	53	55	0	0	44	0.99
65040--65065	3	8.7	3	100	0	52	69	0	0	30	0.89
66439--66482	21	2.2	19	84	8	52	36	0	9	54	1.32
72044--72103	31	1.9	31	96	0	111	30	6	15	48	1.70
73985--74052	33	2.2	30	84	12	84	60	2	0	36	1.12
74471--74511	21	1.9	22	85	5	57	51	0	0	48	1.00
75127--75165	18	2.1	19	85	4	53	66	2	0	30	1.05
76397--76424	2	14.0	2	100	0	56	50	0	0	50	1.00
77547--77571	7	3.6	7	100	0	50	0	12	0	88	0.53
85045--85070	2	13.0	2	100	0	52	50	0	0	50	1.00
93821--93859	15	2.6	15	88	8	53	41	2	7	48	1.45
95340--95384	18	2.4	19	85	11	65	33	0	0	66	0.92
101548--101589	18	2.3	19	91	4	68	47	2	4	45	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101544--101583	21	1.9	21	84	0	53	50	2	5	42	1.37
102225--102324	35	2.8	35	83	10	114	53	3	1	43	1.23
102226--102324	18	5.6	17	78	7	108	53	3	1	42	1.23
102224--102292	6	11.5	6	73	16	54	50	2	1	44	1.25
102404--102498	49	2.0	47	83	8	120	28	0	8	63	1.24
103093--103143	23	2.2	23	82	6	59	35	0	5	58	1.22
103091--103142	17	3.1	17	82	0	68	34	0	5	59	1.21
103093--103143	11	4.4	12	75	9	52	35	0	5	58	1.22
104822--104916	17	5.5	17	74	3	84	34	4	6	54	1.45
104884--104925	17	2.4	17	88	4	57	47	0	2	50	1.14
106668--106770	29	3.6	27	71	16	82	35	19	1	42	1.62
106666--106799	59	2.3	59	81	10	159	34	23	2	39	1.70
106756--106887	29	4.6	29	70	13	85	33	25	5	36	1.78
106755--106877	59	2.1	60	83	7	162	35	24	5	34	1.79
106785--106887	29	3.6	29	72	13	104	33	23	4	37	1.76
106780--106917	59	2.3	58	85	4	170	32	24	5	37	1.77
110942--110975	17	2.1	17	88	5	52	17	14	5	61	1.52
111425--111459	13	2.9	12	91	8	54	77	0	8	14	0.99
112269--112323	7	7.7	7	77	16	51	83	0	10	5	0.79
113416--113863	49	9.1	49	67	15	246	38	18	24	18	1.93
113416--113904	98	5.0	100	84	6	576	38	18	24	19	1.93
114180--114323	39	3.7	39	75	0	144	23	28	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114137--114362	39	5.8	38	68	14	129	25	29	19	25	1.98
114141--114363	78	2.9	76	79	6	232	25	29	19	26	1.99
114946--115039	17	5.5	17	75	5	84	35	3	5	56	1.38
114946--115036	34	2.7	33	80	10	112	34	3	5	57	1.38
114946--115048	34	3.0	34	76	8	102	37	2	4	54	1.37
116664--116777	29	3.9	29	77	10	99	35	25	2	36	1.70
116810--116884	29	2.6	28	79	12	73	33	29	6	30	1.83
118771--118811	15	2.6	16	81	14	50	39	2	2	56	1.26
118772--118809	17	2.3	16	86	13	51	42	2	2	52	1.29
120868--120899	16	2.0	16	93	0	55	71	0	0	28	0.86
121262--121300	19	2.1	19	90	0	60	7	17	0	74	1.05
122374--122449	6	12.8	6	72	17	52	40	2	2	53	1.28
122372--122441	17	4.1	17	88	1	95	38	2	2	55	1.29
123155--123201	18	2.6	18	80	12	60	61	2	0	36	1.08
129429--129465	18	2.1	17	90	5	56	70	2	2	24	1.14
130226--130269	16	2.6	17	78	7	54	15	4	6	72	1.22
131702--131741	21	1.9	21	89	0	62	65	0	10	25	1.24
134167--134234	24	2.8	24	91	4	93	57	0	2	39	1.14
134861--134894	16	2.3	15	90	10	52	79	0	2	17	0.86
144883--144941	31	1.9	31	82	6	75	54	5	11	28	1.58
157382--157424	22	2.0	22	81	9	52	55	2	2	39	1.25
159564--160249	325	2.1	327	85	3	936	28	17	12	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165407--165431	3	8.3	3	100	0	50	64	0	0	36	0.94
166229--166257	3	9.7	3	100	0	58	34	0	0	65	0.93
166635--166918	41	7.1	41	78	5	296	26	26	24	22	2.00
166635--166918	77	3.6	79	79	6	254	26	26	24	22	2.00
166656--166919	118	2.2	119	82	4	309	25	26	23	24	2.00
167559--167599	19	2.1	20	86	4	57	43	2	0	53	1.13
168616--168663	10	4.8	10	80	17	55	20	6	6	66	1.36
168597--168658	29	2.1	29	96	0	115	19	4	6	69	1.29
168596--168634	19	2.1	19	86	13	55	20	5	5	69	1.28
173101--173225	43	2.9	43	91	0	178	24	16	28	29	1.97
175171--175198	2	14.0	2	100	0	56	50	0	0	50	1.00
181697--181735	17	2.2	19	90	9	64	30	0	5	64	1.15
186923--187114	51	3.8	51	90	2	278	29	23	15	32	1.95
186874--187114	51	4.6	50	85	6	277	28	23	15	32	1.95
186914--187101	101	1.8	103	89	2	299	30	22	15	30	1.95
187997--188030	17	2.0	17	100	0	68	41	29	5	23	1.78
188946--189027	40	2.0	40	100	0	164	39	17	3	40	1.67
189113--189171	29	2.0	30	90	3	93	45	15	8	30	1.75
191985--192027	5	8.6	5	97	0	68	32	0	0	67	0.91
198888--198927	21	1.9	21	94	0	71	57	12	0	30	1.36
199276--199319	13	3.2	13	87	9	61	0	20	0	79	0.73
199698--199745	24	2.0	24	100	0	96	25	0	33	41	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209253--209307	27	2.0	27	85	0	74	21	25	25	27	2.00
211586--211633	18	2.8	17	84	6	60	79	0	6	14	0.92
212288--212351	34	1.9	33	93	3	110	42	1	0	56	1.09
212438--212471	16	2.1	16	94	0	59	58	0	0	41	0.98
215605--215797	100	1.9	99	85	7	266	45	13	13	27	1.82
218519--218553	6	5.8	6	86	0	52	14	45	0	40	1.45
220916--220957	22	1.9	22	90	0	66	35	9	21	33	1.86
221506--221530	3	8.3	3	100	0	50	32	0	0	68	0.90
222473--222546	30	2.5	30	93	2	123	54	17	0	28	1.44
222813--222888	18	4.1	18	73	9	62	55	9	1	34	1.40

Tables:   1   2