Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014077.1 Kokia drynarioides strain JFW-HI SEQ_129108, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 234618
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34

Warning! 254 characters in sequence are not A, C, G, or T


File 2 of 2

Found at i:233171 original size:12 final size:12

Alignment explanation


    Indices: 233154--233178  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

     233144 TAGGACCTAA

                        
     233154 TATGTGTGTGTG
          1 TATGTGTGTGTG

                        
     233166 TATGTGTGTGTG
          1 TATGTGTGTGTG

             
     233178 T
          1 T

     233179 GTGTATCTGG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.08, C:0.00, G:0.40, T:0.52


Consensus pattern (12 bp):   
TATGTGTGTGTG

Done.