genome.fa.s14079.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014079.1 Kokia drynarioides strain JFW-HI SEQ_129110, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42894

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181--1309	216	5.2	216	82	5	1356	40	13	16	28	1.87
181--1309	432	2.6	431	87	3	1571	40	13	16	28	1.87
1228--1404	98	1.8	98	81	4	223	41	11	17	28	1.85
1391--1705	162	1.9	163	81	3	375	40	15	15	27	1.89
1583--1885	159	1.9	161	83	3	394	41	13	16	29	1.86
2041--3271	419	2.9	414	82	4	1438	39	14	15	30	1.87
2738--3271	216	2.6	201	77	12	565	39	14	16	29	1.88
2851--3378	216	2.4	215	82	3	639	38	12	18	30	1.88
1812--3271	419	3.5	412	79	8	1300	40	14	15	29	1.87
3319--3499	98	1.8	99	80	8	217	39	12	18	29	1.87
3458--3841	201	1.9	201	84	3	522	40	15	16	27	1.89
3801--4200	204	2.0	200	86	2	559	39	14	17	29	1.89
4600--4698	39	2.5	39	91	0	162	25	7	15	52	1.67
5763--7896	216	10.1	215	78	6	2105	39	14	17	28	1.88
5749--7893	832	2.5	843	80	6	2402	39	14	17	28	1.88
9939--11845	216	9.0	214	79	8	1814	40	14	16	29	1.87
11738--11776	20	2.0	20	89	0	60	51	12	5	30	1.62
11895--12809	216	4.3	216	75	10	548	39	14	17	28	1.89
12397--12907	216	2.4	216	82	4	636	39	13	17	28	1.88
12825--13005	98	1.8	98	83	4	240	41	13	17	27	1.87
13516--15587	214	9.8	214	78	8	1817	40	14	16	28	1.87
15210--15587	200	1.9	203	84	4	516	41	14	15	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15596--16367	216	3.6	216	81	2	843	40	14	17	28	1.88
17447--17545	39	2.5	39	98	0	189	53	16	5	25	1.63
25577--25615	5	7.8	5	91	0	60	2	17	2	76	1.01
29799--29846	21	2.3	21	96	0	87	29	12	20	37	1.90
30480--30534	18	3.1	17	77	10	56	10	10	1	76	1.10
31393--31443	25	2.1	24	85	10	68	50	13	11	23	1.74
34780--34817	15	2.5	15	86	0	58	15	18	5	60	1.53
35896--35967	17	4.4	15	75	19	56	41	1	4	52	1.29
35909--35956	15	3.1	15	81	6	51	41	0	6	52	1.27
36779--36819	14	2.8	15	82	14	50	51	4	0	43	1.23
36741--36787	3	15.7	3	100	0	94	68	0	0	31	0.90
37963--38256	29	9.9	29	73	11	213	31	25	4	38	1.75
37955--38284	59	5.6	59	84	6	418	31	25	4	37	1.76
37955--38279	119	2.7	117	85	6	422	32	26	4	37	1.76

Tables:   1

The End!