genome.fa.s14081.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014081.1 Kokia drynarioides strain JFW-HI SEQ_129112, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116464

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
278--308	10	2.9	11	90	9	55	64	6	9	19	1.45
957--1000	23	1.9	23	86	9	63	13	13	25	47	1.79
13644--13740	48	2.0	48	100	0	194	28	20	26	23	1.99
16068--17080	509	2.0	510	95	0	1812	35	8	18	37	1.81
17315--17402	42	2.1	42	89	8	135	42	6	14	36	1.73
18520--18559	3	13.3	3	83	0	53	60	5	35	0	1.19
19796--19853	28	2.1	28	81	9	75	48	0	0	51	1.00
20881--20979	26	3.4	30	82	10	118	48	1	1	49	1.14
21814--21849	18	2.0	18	88	0	54	25	11	8	55	1.62
22827--22871	17	2.6	18	79	10	58	57	0	2	40	1.11
24300--24341	22	1.9	22	100	0	84	23	14	16	45	1.84
25148--25214	20	3.4	20	80	8	75	43	26	2	26	1.69
33792--33831	14	2.9	14	85	3	55	87	7	5	0	0.66
34283--34307	2	12.5	2	100	0	50	48	0	0	52	1.00
46931--46968	7	5.4	7	90	0	58	34	15	23	26	1.95
48400--48465	29	2.2	30	83	2	80	63	4	6	25	1.37
54251--54308	17	3.4	17	83	9	82	46	0	1	51	1.11
56127--56511	29	13.1	29	83	6	445	35	29	2	31	1.71
56127--56511	59	6.5	58	85	5	445	35	29	2	31	1.71
56140--56477	88	3.8	87	86	5	430	35	29	2	31	1.71
56283--56593	58	5.3	60	81	9	225	33	29	4	31	1.78
56169--56623	59	7.7	59	79	8	257	34	28	4	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67766--67819	28	2.0	27	96	3	99	9	16	7	66	1.42
69373--69447	17	4.4	17	81	6	89	45	0	2	52	1.15
69379--69447	34	2.0	34	88	5	104	44	0	1	53	1.09
69667--69702	13	2.8	13	100	0	72	30	44	0	25	1.54
71257--71446	29	6.5	28	79	11	195	33	28	4	32	1.78
71256--71550	58	5.0	57	76	11	233	32	28	6	32	1.82
71256--71446	88	2.2	86	87	5	258	34	28	4	32	1.78
73323--73364	20	2.1	20	90	0	66	38	0	19	42	1.51
73380--73428	21	2.3	21	89	0	71	48	2	6	42	1.39
73380--73443	7	9.1	7	74	6	58	53	1	4	40	1.31
78265--78295	3	10.3	3	92	0	53	32	35	0	32	1.58
81271--81348	17	4.5	17	73	7	68	41	1	3	53	1.27
81315--81361	24	2.0	23	87	4	67	46	2	2	48	1.25
82060--82141	3	27.0	3	73	7	67	56	2	2	39	1.26
82084--82141	16	3.5	17	79	11	52	55	0	3	41	1.17
83302--83493	57	3.3	59	89	6	268	35	27	1	34	1.67
83292--83493	29	6.9	28	85	8	244	35	28	1	34	1.69
83292--83521	29	7.9	28	81	9	221	34	29	2	33	1.71
83304--83579	58	4.8	58	84	4	240	35	27	3	33	1.73
83304--83641	116	2.9	114	78	10	269	34	27	4	33	1.76
83300--83581	29	9.7	29	76	13	138	35	27	3	34	1.74
86919--87015	51	1.9	51	89	0	149	38	26	18	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93986--94035	26	1.9	26	83	0	64	30	2	12	56	1.47
94101--94141	6	6.8	6	83	10	57	65	14	2	17	1.37
96561--96620	17	3.6	17	79	4	77	43	0	0	56	0.99
96554--96650	33	2.8	33	90	4	140	41	3	1	54	1.23
101597--101636	19	2.1	19	85	0	53	22	7	32	37	1.82
101746--101785	19	2.1	19	86	9	55	35	5	2	57	1.34
102075--102101	6	4.5	6	100	0	54	81	0	0	18	0.69
103061--103162	9	11.2	9	72	17	68	65	1	2	29	1.18
103081--103163	28	3.0	28	82	8	98	62	1	3	32	1.20
103113--103169	8	6.8	8	77	15	53	70	1	1	26	1.07
103312--103395	10	8.7	10	75	8	59	36	1	1	60	1.12
106009--106039	12	2.6	12	89	0	53	64	0	29	6	1.18
114095--114119	13	1.9	13	100	0	50	0	16	4	80	0.87

Tables:   1

The End!