Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014082.1 Kokia drynarioides strain JFW-HI SEQ_129113, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6974
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31


Found at i:2320 original size:24 final size:25

Alignment explanation


    Indices: 2288--2337  Score: 59
    Period size: 24  Copynumber: 2.0  Consensus size: 25

       2278 GGAGGTGATC

                                      
       2288 AGGAGAA-GGATGAAGAAAAAGAAGA
          1 AGGAGAAGGGA-GAAGAAAAAGAAGA

                            *  *     
       2313 AGGA-AAGGGAGAAGAGAAGGAAGA
          1 AGGAGAAGGGAGAAGAAAAAGAAGA

             
       2337 A
          1 A

       2338 ACTGAACATG


Statistics
Matches: 22,  Mismatches: 2, Indels: 3
        0.81            0.07        0.11

Matches are distributed among these distances:
  24   15  0.68
  25    7  0.32

ACGTcount: A:0.58, C:0.00, G:0.40, T:0.02


Consensus pattern (25 bp):   
AGGAGAAGGGAGAAGAAAAAGAAGA
Done.