Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014087.1 Kokia drynarioides strain JFW-HI SEQ_129118, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5678
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.30


Found at i:2321 original size:15 final size:16

Alignment explanation


    Indices: 2295--2324  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

       2285 TGAGGAAAAA

                            
       2295 TAAAAGAAAATAGAAT
          1 TAAAAGAAAATAGAAT

                           
       2311 TAAAA-AAAATAGAA
          1 TAAAAGAAAATAGAA

       2325 AATAAGGAAG


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    9  0.64
  16    5  0.36

ACGTcount: A:0.73, C:0.00, G:0.10, T:0.17


Consensus pattern (16 bp):   
TAAAAGAAAATAGAAT
Done.