genome.fa.s14089.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014089.1 Kokia drynarioides strain JFW-HI SEQ_129120, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76794

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85--162	13	5.9	13	80	6	77	0	29	1	69	0.97
85--163	4	19.2	4	75	10	70	0	30	1	68	0.98
115--163	17	2.9	17	88	8	73	0	24	0	75	0.80
2196--2243	24	2.0	24	95	0	87	43	8	20	27	1.80
6213--6371	23	6.9	23	78	7	135	41	20	23	13	1.89
6208--6339	69	1.9	66	85	11	176	42	21	21	13	1.88
13401--13493	22	4.1	22	76	11	89	45	22	20	11	1.84
13402--13506	25	4.5	24	89	7	128	44	22	20	11	1.84
13421--13506	25	3.5	25	92	6	149	44	23	20	11	1.84
25806--25851	20	2.3	20	100	0	92	15	21	15	47	1.81
25995--26158	40	4.1	40	80	2	175	37	18	21	21	1.95
26085--26334	41	6.1	41	77	5	193	34	16	25	23	1.95
27130--27244	56	2.0	57	81	8	137	37	12	8	41	1.73
28461--28579	41	2.9	40	76	5	112	36	19	23	20	1.95
28721--28756	10	3.7	10	85	7	56	52	5	0	41	1.24
28720--28756	19	1.9	19	94	0	65	51	5	0	43	1.24
31749--31791	4	10.5	4	90	5	50	32	0	0	67	0.91
31914--32081	43	3.9	43	81	4	189	27	16	27	27	1.97
42574--42620	22	2.1	22	88	0	67	78	2	6	12	1.02
47746--47775	15	1.9	16	93	6	53	70	0	13	16	1.18
47719--47781	22	2.9	22	88	4	83	74	1	9	14	1.13
49619--49664	24	2.0	23	82	4	56	52	4	0	43	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52011--52208	68	3.0	67	72	18	189	41	3	4	51	1.38
53790--53841	24	2.2	23	80	10	59	38	3	7	50	1.50
56669--56826	36	4.4	36	74	7	124	32	11	22	33	1.90
56713--56809	35	2.7	35	77	4	106	34	12	19	34	1.89
57220--57334	10	11.4	10	81	1	131	29	1	20	47	1.60
57215--57343	30	4.2	30	85	3	168	31	2	20	46	1.63
57353--57457	23	4.6	23	87	2	131	34	3	16	45	1.65
60385--60603	36	6.1	36	86	0	296	29	8	23	38	1.84
60993--61090	10	9.7	10	79	1	106	33	2	20	43	1.63
60998--61090	20	4.7	20	89	0	141	32	1	21	45	1.59
61083--61204	23	5.3	23	91	2	165	33	3	16	46	1.63
65511--65536	5	5.2	5	100	0	52	19	57	0	23	1.40
74783--74956	96	1.8	96	82	7	228	37	13	18	29	1.90
75286--75347	28	2.2	29	82	2	72	35	1	29	33	1.67
75321--75475	60	2.6	60	86	1	204	32	2	31	33	1.72
75295--75498	30	6.9	29	79	7	173	32	2	31	32	1.73
76458--76539	34	2.4	33	82	6	92	36	6	4	52	1.48
76441--76514	3	23.0	3	77	10	58	36	4	4	55	1.38
76450--76539	37	2.4	38	76	14	98	37	5	4	52	1.45

Tables:   1

The End!