genome.fa.s14101.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014101.1 Kokia drynarioides strain JFW-HI SEQ_129132, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  273957

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5349--5387	20	2.0	20	95	5	71	56	20	10	12	1.65
6681--6714	17	2.0	17	94	0	59	41	8	5	44	1.60
6728--6770	21	2.0	22	86	4	61	39	20	11	27	1.88
11265--11446	51	3.6	49	83	9	167	28	23	15	32	1.95
16659--16874	116	1.9	116	88	0	324	32	24	8	34	1.85
18517--18559	20	2.2	20	83	8	52	34	16	0	48	1.46
25346--25392	16	2.9	16	81	6	51	53	2	2	42	1.25
30478--30537	21	2.9	21	76	0	66	36	23	16	23	1.94
37535--37567	11	3.1	11	82	8	50	30	12	9	48	1.71
43796--43842	21	2.2	20	82	14	51	40	23	17	19	1.91
47751--47803	18	2.9	18	74	0	61	39	22	11	26	1.88
53398--53440	12	3.8	12	81	12	54	62	0	37	0	0.95
53391--53438	22	2.2	21	92	3	78	60	0	39	0	0.97
53842--53886	21	2.3	19	80	7	54	22	11	13	53	1.71
60435--60486	21	2.5	21	87	6	79	32	19	17	30	1.95
61149--61240	40	2.3	40	88	1	141	26	23	7	42	1.81
61175--61325	41	3.7	41	78	4	117	24	25	9	41	1.84
65311--65338	6	4.7	6	100	0	56	71	0	0	28	0.86
72016--72085	29	2.4	29	82	2	77	40	10	7	42	1.66
72149--72181	15	2.2	15	100	0	66	0	33	6	60	1.21
74863--74902	18	2.2	17	86	8	53	25	0	5	70	1.08
75018--75064	21	2.3	20	83	16	62	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82844--82948	36	2.9	36	86	1	138	21	25	13	39	1.90
86232--86275	22	2.0	22	100	0	88	36	9	31	22	1.86
86508--86684	88	2.0	88	97	0	336	35	12	11	40	1.80
89624--89673	24	2.1	24	81	7	57	46	16	8	30	1.75
95580--95619	19	2.1	19	86	9	55	50	7	12	30	1.68
96070--96112	17	2.5	17	84	3	59	53	2	23	20	1.57
96695--96741	22	2.1	22	84	7	60	65	0	0	34	0.93
106538--106581	20	2.1	21	87	4	63	52	11	9	27	1.67
111212--111259	21	2.3	21	89	7	71	27	14	22	35	1.93
113432--113458	5	5.4	5	100	0	54	18	0	0	81	0.69
119239--119364	51	2.4	52	92	1	209	33	20	11	34	1.88
121769--121833	32	2.0	32	100	0	130	18	18	18	44	1.87
130703--130754	13	4.0	13	80	9	70	40	0	17	42	1.49
132312--132370	31	1.9	31	86	3	84	50	15	1	32	1.54
132420--132481	21	2.9	22	78	9	74	29	0	20	50	1.49
132502--132542	11	3.9	11	78	12	50	34	0	0	65	0.93
133970--134162	52	3.7	52	85	0	269	34	24	14	26	1.94
136338--136395	22	2.7	22	97	2	109	44	8	0	46	1.34
136702--136770	30	2.4	29	80	7	77	34	18	4	42	1.71
147238--147274	18	2.1	18	89	0	56	24	27	0	48	1.51
147584--147612	6	4.8	6	100	0	58	0	13	0	86	0.58
171769--171878	30	3.6	31	83	3	134	17	24	18	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172255--172301	10	4.8	10	81	2	60	14	25	25	34	1.94
176901--176976	30	2.5	30	89	0	107	18	23	15	42	1.89
176905--176987	30	2.8	30	84	0	94	19	25	18	37	1.94
181036--181104	36	1.9	36	87	0	102	31	13	14	40	1.84
181509--181563	23	2.3	23	72	25	60	61	7	9	21	1.50
182378--182402	6	4.2	6	100	0	50	84	0	16	0	0.63
186964--187014	23	2.3	23	89	3	77	31	17	15	35	1.92
186977--187026	22	2.2	23	82	3	57	34	12	12	42	1.79
187794--187818	4	6.2	4	100	0	50	76	24	0	0	0.80
194140--194186	22	2.2	22	92	3	78	74	2	8	14	1.15
195006--195048	19	2.3	19	84	8	52	58	4	0	37	1.19
197249--197358	57	1.9	57	90	0	175	36	10	26	26	1.89
197576--197603	2	14.0	2	100	0	56	0	0	50	50	1.00
212307--212365	24	2.5	24	83	5	75	49	0	1	49	1.11
212384--212422	17	2.2	18	86	4	53	51	2	5	41	1.38
214001--214044	14	2.8	16	80	16	56	47	0	0	52	1.00
223583--223644	26	2.4	26	81	2	72	50	0	4	45	1.23
226669--226875	105	2.0	105	81	1	245	40	20	24	14	1.90
230072--230163	42	2.2	42	83	11	109	26	19	31	22	1.98
235489--235523	17	2.0	18	88	5	54	28	25	11	34	1.91
235409--235622	111	1.9	111	89	0	329	34	14	14	36	1.87
235665--235706	21	2.0	21	90	0	66	40	16	7	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
238806--238857	21	2.5	21	100	0	104	34	19	9	36	1.84
239885--239914	3	9.7	3	92	7	51	33	0	0	66	0.92
240131--240157	3	9.0	3	100	0	54	33	0	0	66	0.92
246183--246330	38	3.9	38	80	0	152	34	18	14	32	1.91
246528--246590	31	2.0	31	100	0	126	36	19	6	38	1.77
252952--253075	30	4.1	30	81	4	151	35	22	3	38	1.71
259791--259924	49	2.7	49	79	7	137	37	14	27	20	1.92
260255--260486	82	2.8	81	86	3	315	35	20	13	30	1.91
260255--260510	41	6.2	41	81	2	282	35	20	14	29	1.92
260504--260694	46	4.2	46	78	4	197	35	23	16	24	1.95
260474--260694	92	2.5	91	84	8	267	35	23	17	23	1.95
260768--260933	85	2.0	85	85	2	226	37	15	21	25	1.92
261696--261749	22	2.5	22	81	3	65	75	7	3	12	1.14
262290--262478	30	6.3	30	85	1	236	33	25	1	39	1.63
262258--262478	60	3.7	60	79	6	236	34	24	1	39	1.64
262303--262474	89	1.9	90	89	1	265	31	27	1	39	1.64
263087--263139	18	3.0	17	76	13	54	20	5	1	71	1.16
268126--268157	16	2.0	16	93	0	55	65	0	6	28	1.16
268188--268253	12	6.1	11	75	18	59	22	6	0	71	1.08
268210--268250	17	2.3	18	87	4	57	21	2	0	75	0.92
269183--269240	11	5.5	11	78	10	50	79	0	8	12	0.94
269183--269221	11	3.6	11	82	3	53	74	0	7	17	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
269213--269242	14	2.1	14	93	0	51	86	0	13	0	0.57
270201--270246	25	1.9	25	86	8	69	32	4	6	56	1.45
273309--273377	31	2.2	32	82	7	88	40	1	4	53	1.30

Tables:   1

The End!