Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014102.1 Kokia drynarioides strain JFW-HI SEQ_129133, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3642
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35


Found at i:331 original size:25 final size:24

Alignment explanation


    Indices: 286--334  Score: 62
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        276 ACCAGTAGGA

                      *   * *       
        286 ATTATAAAAATGAATTTAATAATT
          1 ATTATAAAAAAGAAGTAAATAATT

                                     
        310 ATTATAAAAAAGATAGTAAATAATT
          1 ATTATAAAAAAGA-AGTAAATAATT

        335 CTATCATAAA


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  24   12  0.57
  25    9  0.43

ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37


Consensus pattern (24 bp):   
ATTATAAAAAAGAAGTAAATAATT
Done.