genome.fa.s14103.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014103.1 Kokia drynarioides strain JFW-HI SEQ_129134, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150115

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134--163	2	15.0	2	100	0	60	0	50	0	50	1.00
692--754	21	3.2	19	80	10	81	36	25	20	17	1.94
689--754	14	5.0	13	78	8	71	39	24	19	16	1.92
731--782	11	4.6	11	75	13	52	32	26	23	17	1.96
732--806	33	2.2	34	88	2	107	30	22	25	21	1.99
9167--9210	19	2.4	18	85	7	61	47	0	15	36	1.46
9422--9712	89	3.2	89	81	6	329	35	1	25	38	1.63
9425--9712	30	9.6	30	83	5	316	35	1	25	37	1.63
10529--10571	22	1.9	23	85	4	61	25	0	2	72	0.97
11706--11973	123	2.2	123	85	4	371	22	21	15	40	1.90
11907--12029	48	2.6	48	85	0	165	27	22	12	37	1.90
11833--12145	172	1.8	171	90	0	500	23	21	15	38	1.92
11952--12769	209	4.0	209	89	2	1226	22	21	17	37	1.94
12069--12235	85	2.0	85	89	2	255	22	23	17	35	1.95
12278--12442	85	2.0	84	86	1	231	25	24	13	36	1.92
12478--12655	48	3.9	48	72	16	146	21	21	19	38	1.94
12698--12820	48	2.6	48	88	2	167	23	23	15	37	1.93
12373--13063	376	1.8	373	88	2	1062	22	20	17	39	1.93
12738--14079	209	6.4	209	86	1	1792	23	20	16	38	1.93
13280--13446	85	2.0	85	84	0	217	25	25	14	34	1.94
12738--14079	417	3.2	417	86	1	1862	23	20	16	38	1.93
12738--14079	626	2.1	627	88	1	1983	23	20	16	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20111--20164	22	2.5	22	81	6	74	48	24	20	7	1.75
20657--20698	20	2.1	20	95	0	75	35	14	7	42	1.73
23291--23358	31	2.2	31	84	5	84	26	20	19	33	1.96
23384--23445	31	2.0	30	90	3	97	35	12	11	40	1.80
27645--27678	18	1.9	17	88	5	50	47	2	0	50	1.16
36728--36764	18	2.1	18	89	0	56	48	10	10	29	1.72
41476--41614	28	4.9	28	78	5	154	23	12	23	41	1.88
41476--41614	56	2.5	57	81	1	172	23	12	23	41	1.88
41618--41737	29	4.1	29	81	0	132	20	12	26	40	1.88
44976--45013	16	2.4	16	86	8	51	71	5	0	23	1.07
46661--46936	140	2.0	140	96	0	507	21	19	24	34	1.96
50419--50483	34	1.9	34	90	0	103	16	24	9	49	1.75
51346--51396	21	2.4	21	86	0	75	35	21	9	33	1.86
54064--54100	17	2.2	17	90	0	56	59	8	10	21	1.56
54064--54117	18	3.1	18	83	2	56	57	11	11	20	1.63
65585--65717	44	3.0	43	90	4	203	21	24	17	37	1.94
67615--67654	22	1.9	19	85	14	53	47	10	0	42	1.37
68482--68535	28	1.9	28	84	0	72	35	12	18	33	1.89
69366--69420	26	2.1	26	89	0	83	32	18	18	30	1.95
69708--69766	25	2.4	25	100	0	118	35	22	30	11	1.90
74535--74583	24	2.0	24	100	0	98	44	12	16	26	1.82
75655--75808	69	2.3	68	84	6	190	16	31	11	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78905--78937	12	2.8	12	90	4	50	6	27	6	60	1.44
83914--83995	30	2.7	30	86	3	103	51	0	2	46	1.14
84812--84888	31	2.5	30	84	12	102	49	1	1	48	1.17
84848--84890	22	2.0	22	90	4	70	51	0	0	48	1.00
84848--84896	20	2.4	20	86	10	64	48	0	0	51	1.00
87046--87307	131	2.0	130	98	0	506	22	19	29	27	1.98
94625--94655	12	2.7	11	90	9	53	29	0	0	70	0.87
97360--97414	23	2.3	26	75	15	64	49	1	0	49	1.11
97337--97405	23	2.9	24	77	14	72	44	1	0	53	1.09
97341--97467	30	4.5	28	71	17	84	48	2	0	48	1.20
97459--97510	16	3.4	16	77	15	56	51	0	0	48	1.00
97361--97517	83	1.9	81	82	10	192	48	2	0	48	1.19
99379--99537	77	2.1	78	96	1	293	32	8	15	42	1.78
104364--104605	95	2.6	95	80	4	267	28	26	12	33	1.92
104337--104606	95	2.8	96	79	3	244	29	25	11	33	1.91
107900--107937	19	2.1	19	95	5	69	50	0	10	39	1.37
127740--127849	47	2.3	47	87	0	157	30	14	20	34	1.93
130865--130908	19	2.3	19	92	0	70	36	27	11	25	1.90
134718--134755	2	19.0	2	100	0	76	50	0	0	50	1.00
134841--135066	40	5.7	40	86	3	258	31	20	23	23	1.98
134841--135092	80	3.2	80	82	4	285	32	20	23	24	1.98
134923--135106	40	4.6	40	84	2	147	33	21	21	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134846--135126	120	2.3	120	80	3	289	31	19	23	25	1.98
136926--136956	2	15.5	2	100	0	62	48	0	0	51	1.00
137048--137182	40	3.4	39	81	10	134	31	23	20	24	1.98
137082--137263	40	4.6	39	76	11	127	31	20	21	25	1.98
143725--143960	52	4.6	52	86	2	307	33	24	15	25	1.95

Tables:   1

The End!