genome.fa.s14106.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014106.1 Kokia drynarioides strain JFW-HI SEQ_129137, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126817

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3282--3526	52	4.7	52	90	0	355	33	23	13	29	1.93
4604--4655	21	2.4	21	84	15	79	48	17	15	19	1.82
4664--4745	26	3.2	26	92	0	137	39	20	28	12	1.89
6214--6243	14	2.2	13	94	5	51	46	20	0	33	1.51
8320--8357	18	2.2	18	86	13	53	52	7	2	36	1.45
9299--9336	16	2.4	16	90	0	58	71	0	0	28	0.87
9307--9350	23	1.9	23	86	9	63	65	2	0	31	1.05
12492--12602	31	3.6	30	80	8	125	43	9	2	44	1.52
12696--12739	23	2.0	22	86	8	63	54	11	0	34	1.36
13766--13796	2	15.5	2	93	0	53	0	48	3	48	1.17
18573--18642	30	2.3	29	87	4	95	67	10	1	21	1.28
23746--23775	2	15.0	2	100	0	60	50	0	0	50	1.00
24894--24938	5	9.0	5	95	0	63	0	6	40	53	1.27
26039--26085	20	2.3	20	85	7	60	53	0	6	40	1.27
29120--29144	2	12.5	2	100	0	50	48	0	0	52	1.00
33313--33504	96	2.0	96	83	2	242	35	15	19	28	1.93
33839--34115	29	9.4	28	75	7	221	32	2	28	36	1.72
33828--34119	59	5.0	58	76	11	247	33	2	29	34	1.72
33828--34119	88	3.3	85	79	6	278	33	2	29	34	1.72
35913--35995	6	13.8	6	71	11	55	50	6	1	42	1.34
35914--36019	17	6.0	17	75	9	70	52	7	1	37	1.41
39823--40118	24	11.9	24	78	8	252	23	24	18	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39823--40118	48	6.0	48	82	7	313	23	24	18	33	1.97
39823--40118	72	4.0	72	78	8	286	23	24	18	33	1.97
39931--40091	82	2.0	83	86	1	225	25	24	18	31	1.98
39957--40067	58	1.9	59	86	1	161	25	25	18	30	1.98
39909--40111	106	1.9	106	88	0	307	23	25	18	32	1.97
39883--40116	130	1.8	130	87	0	351	25	24	17	32	1.97
41128--41160	16	2.1	16	88	5	50	51	21	0	27	1.48
43119--43144	2	13.0	2	100	0	52	50	0	0	50	1.00
44074--44210	69	2.0	70	95	1	249	45	9	13	30	1.76
49992--50120	45	2.9	45	97	2	242	37	24	13	23	1.92
54729--54808	23	3.5	22	83	5	97	35	28	22	13	1.92
54797--54872	23	3.3	23	88	0	116	42	19	27	10	1.84
61180--61244	31	2.1	31	82	0	76	35	18	1	44	1.59
65972--66150	96	1.9	96	83	0	232	31	29	15	23	1.95
66061--67011	120	7.9	120	83	2	1021	29	28	14	27	1.95
68332--68366	18	1.9	18	88	0	52	57	0	5	37	1.23
70833--70905	36	2.0	37	82	12	89	32	6	2	57	1.39
74028--74080	25	2.2	25	86	10	74	39	0	7	52	1.30
75477--75547	27	2.5	29	84	6	83	47	2	7	42	1.45
75464--75529	27	2.8	22	71	20	60	50	1	6	42	1.36
76053--76140	38	2.2	40	86	6	117	54	4	2	38	1.33
76094--76428	167	2.0	170	87	2	489	40	2	11	46	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76242--76293	17	2.9	18	77	8	61	63	1	0	34	1.06
76446--76495	17	3.3	15	75	13	50	46	4	2	48	1.32
76409--76449	2	20.5	2	100	0	82	48	0	0	51	1.00
89931--89979	21	2.4	20	83	10	55	22	0	10	67	1.20
93721--93751	2	15.5	2	100	0	62	48	0	0	51	1.00
94193--94263	23	3.2	23	63	25	62	52	8	5	33	1.55
94176--94263	43	2.0	43	100	0	176	54	6	4	34	1.47
95597--95626	3	10.0	3	100	0	60	33	0	33	33	1.58
99232--99268	18	2.1	18	89	0	56	48	0	27	24	1.51
100398--100468	28	2.5	29	79	4	72	33	11	23	30	1.90
100509--100706	59	3.3	58	77	8	168	36	3	25	35	1.72
100542--100714	31	5.8	30	72	14	110	33	2	26	37	1.69
100612--100714	31	3.4	29	79	9	111	33	0	25	40	1.62
102415--102462	20	2.5	20	83	10	55	18	6	22	52	1.68
102463--102521	17	3.6	16	82	10	75	54	1	1	42	1.20
104033--104168	23	6.0	22	78	13	116	44	19	22	13	1.86
104078--104202	46	2.7	46	81	2	133	47	20	20	12	1.81
104037--104168	69	1.9	66	82	11	158	43	20	21	13	1.86
104078--104169	23	4.0	23	89	0	130	45	20	19	14	1.85
110425--110488	8	6.9	9	72	19	51	60	4	0	34	1.17
110431--110504	29	2.5	29	85	10	89	59	4	0	36	1.16
112875--113064	101	1.9	98	86	6	267	33	6	13	46	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117941--117967	7	3.9	7	100	0	54	85	0	0	14	0.61
124677--124721	19	2.4	18	85	3	54	44	13	8	33	1.75
125477--125512	19	1.9	19	88	5	56	52	19	11	16	1.73
125888--126007	58	2.1	58	92	3	197	31	0	20	48	1.50
125902--126022	58	2.1	58	87	0	170	33	0	19	47	1.49
126731--126790	20	3.0	20	76	18	63	31	1	0	66	1.01

Tables:   1

The End!