Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014108.1 Kokia drynarioides strain JFW-HI SEQ_129139, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1843
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29


Found at i:670 original size:45 final size:45

Alignment explanation


    Indices: 603--739  Score: 168
    Period size: 45  Copynumber: 3.0  Consensus size: 45

        593 GCATAGCTCA

                                              *        * 
        603 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCTACCGCAATGC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

                             *     *                     
        648 TCAAGCCAAGGATATCAACCTCAATTTGACGAGCCACCGCAATAC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

                  **           *  *              *   *    
        693 T-ATAGGGAAGGATATCAGGCTGAGTTTGACGAGCCATCGCGATAC
          1 TCA-AGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

              
        738 TC
          1 TC

        740 TATTCCTCCC


Statistics
Matches: 78,  Mismatches: 12, Indels: 3
        0.84            0.13        0.03

Matches are distributed among these distances:
  44    1  0.01
  45   77  0.99

ACGTcount: A:0.31, C:0.26, G:0.23, T:0.20


Consensus pattern (45 bp):   
TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
Done.