genome.fa.s14110.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014110.1 Kokia drynarioides strain JFW-HI SEQ_129141, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  195940

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65--183	23	5.2	22	86	6	132	11	24	22	41	1.87
187--256	23	3.0	23	76	13	70	11	24	18	45	1.82
15908--15943	17	2.1	17	89	0	54	19	0	2	77	0.88
16150--16183	18	1.9	18	88	5	52	29	0	5	64	1.17
27383--27451	21	3.3	21	85	0	75	27	13	23	36	1.92
37677--37737	29	2.1	29	87	3	88	29	3	6	60	1.38
43281--43339	29	2.0	30	90	3	93	28	10	15	45	1.78
43285--43350	29	2.2	29	81	7	80	30	13	12	43	1.80
45234--45281	20	2.4	22	80	16	59	35	8	27	29	1.86
49274--49324	19	2.7	19	82	14	52	33	1	3	60	1.26
49274--49324	17	2.8	18	80	14	52	33	1	3	60	1.26
51745--51801	24	2.4	24	82	2	80	63	1	0	35	1.05
52559--52612	28	1.9	28	81	7	65	51	3	1	42	1.30
52717--52802	38	2.3	38	85	4	111	36	1	6	55	1.34
53075--53226	81	1.9	82	91	1	252	42	3	9	43	1.56
55544--55579	6	6.0	6	86	0	54	36	2	30	30	1.72
58066--58107	20	2.2	19	87	12	59	33	7	2	57	1.39
59631--59660	15	1.9	16	93	6	53	66	0	0	33	0.92
60589--60717	50	2.6	51	79	4	129	34	6	4	54	1.46
63779--64239	69	6.8	69	76	7	320	27	16	24	30	1.97
63791--64179	138	2.8	136	78	9	403	28	17	24	30	1.97
74951--75217	133	2.0	134	94	0	473	26	21	19	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83495--83543	16	3.2	16	66	16	50	44	6	18	30	1.74
83549--83794	30	8.4	28	66	12	77	38	3	22	35	1.71
84408--84439	13	2.6	12	95	5	55	6	3	6	84	0.86
84546--84584	14	2.8	13	85	11	51	46	2	5	46	1.38
84998--85084	27	3.4	27	65	18	78	47	3	6	42	1.47
84982--85090	48	2.2	49	93	1	184	47	3	6	42	1.46
85745--86061	39	8.2	39	70	7	171	26	18	30	23	1.98
85745--86994	78	16.1	78	72	7	634	25	18	30	25	1.98
85807--86116	116	2.7	116	82	3	329	26	19	30	24	1.98
86122--86996	39	22.5	39	68	10	281	25	18	29	26	1.98
86239--86721	117	4.1	117	70	11	319	25	19	29	25	1.98
87756--87947	107	1.8	106	84	1	267	38	9	23	28	1.86
97273--97350	29	2.6	30	77	4	86	33	10	24	32	1.89
97297--97357	29	2.1	29	81	6	70	36	9	19	34	1.85
97371--97467	29	3.3	28	77	7	95	37	4	24	34	1.75
97487--97593	30	3.6	30	84	5	128	39	2	21	36	1.68
102485--102572	27	3.2	26	80	15	97	59	1	1	38	1.13
104533--104582	23	2.1	25	81	7	59	44	8	12	36	1.71
105926--105955	15	2.0	15	93	0	51	63	23	0	13	1.29
107127--107160	15	2.4	14	90	5	50	17	41	0	41	1.50
109058--109172	57	2.0	57	88	3	169	31	20	20	28	1.97
115050--115459	68	6.1	68	77	6	363	24	21	19	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134686--135404	359	2.0	359	98	0	1375	30	15	22	31	1.94
141619--141652	15	2.3	15	89	0	50	58	0	17	23	1.38
142071--142223	56	2.7	55	78	7	166	24	15	30	29	1.96
142071--142224	28	5.5	28	73	11	118	24	15	30	29	1.96
142246--142305	25	2.4	25	85	0	75	25	20	25	30	1.99
150999--151216	37	5.9	37	83	0	256	14	20	32	32	1.93
158299--158431	37	3.6	37	89	0	194	15	21	30	33	1.94
161063--161119	10	5.7	10	80	0	69	47	21	3	28	1.67
161054--161130	10	7.6	10	79	1	55	42	20	3	32	1.70
161519--161597	36	2.2	36	81	0	86	36	26	10	26	1.88
168848--168889	17	2.5	17	96	3	77	45	4	9	40	1.58
181802--181979	88	2.0	88	98	0	347	43	9	9	37	1.70
181808--181999	88	2.2	88	93	1	305	43	9	9	36	1.71
182521--182548	2	14.0	2	100	0	56	0	50	0	50	1.00
189144--189191	16	2.8	17	87	12	62	33	0	2	64	1.05
189239--189271	17	1.9	17	88	11	50	36	0	9	54	1.32
193605--193701	49	2.0	49	91	0	158	29	16	9	44	1.79

Tables:   1

The End!