Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014112.1 Kokia drynarioides strain JFW-HI SEQ_129143, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 360202
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Warning! 52 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:8090 original size:4 final size:4
Alignment explanation
Indices: 8083--8125 Score: 52
Period size: 4 Copynumber: 11.0 Consensus size: 4
8073 TATATGTATG
* * *
8083 TATT TATT TA-T TGTT TATT TATT TGTT TATT TATT TGTT TATT
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT
8126 ATTCATTAAC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
3 2 0.06
4 30 0.94
ACGTcount: A:0.19, C:0.00, G:0.07, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:8110 original size:12 final size:12
Alignment explanation
Indices: 8085--8125 Score: 75
Period size: 12 Copynumber: 3.5 Consensus size: 12
8075 TATGTATGTA
8085 TTTATTTA-TTG
1 TTTATTTATTTG
8096 TTTATTTATTTG
1 TTTATTTATTTG
8108 TTTATTTATTTG
1 TTTATTTATTTG
8120 TTTATT
1 TTTATT
8126 ATTCATTAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
11 8 0.28
12 21 0.72
ACGTcount: A:0.17, C:0.00, G:0.07, T:0.76
Consensus pattern (12 bp):
TTTATTTATTTG
Found at i:8221 original size:23 final size:23
Alignment explanation
Indices: 8144--8225 Score: 76
Period size: 23 Copynumber: 3.5 Consensus size: 23
8134 ACATTGTTTG
* * *
8144 TGAACATGTTCAATTATATATTCA
1 TGAACATGTTCGATTA-ATGTTAA
* **
8168 TGAACATGTTCGTTTAATGTTCG
1 TGAACATGTTCGATTAATGTTAA
*
8191 TGAGCATGTTCGATTAA-GTTAAA
1 TGAACATGTTCGATTAATGTT-AA
8214 TGAACATGTTCG
1 TGAACATGTTCG
8226 TGAACATTAA
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
22 3 0.06
23 31 0.65
24 14 0.29
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.39
Consensus pattern (23 bp):
TGAACATGTTCGATTAATGTTAA
Found at i:10775 original size:6 final size:6
Alignment explanation
Indices: 10764--10790 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
10754 CAGTCAATAG
10764 AGAGAA AGAGAA AGAGAA AGAGAA AGA
1 AGAGAA AGAGAA AGAGAA AGAGAA AGA
10791 CAGAAGGATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (6 bp):
AGAGAA
Found at i:15102 original size:35 final size:35
Alignment explanation
Indices: 15063--15137 Score: 114
Period size: 35 Copynumber: 2.1 Consensus size: 35
15053 TTATTATTTC
* * * *
15063 TTTAACGGAAATTTTACGTGATAGTTTAAATGAGT
1 TTTAACGAAAATCTTAAGTGACAGTTTAAATGAGT
15098 TTTAACGAAAATCTTAAGTGACAGTTTAAATGAGT
1 TTTAACGAAAATCTTAAGTGACAGTTTAAATGAGT
15133 TTTAA
1 TTTAA
15138 ATGTCAATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.39
Consensus pattern (35 bp):
TTTAACGAAAATCTTAAGTGACAGTTTAAATGAGT
Found at i:15200 original size:18 final size:18
Alignment explanation
Indices: 15177--15219 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
15167 TAATAGGTTT
15177 TTAATTAAATAAATTT-AA
1 TTAATTAAA-AAATTTAAA
*
15195 TTAATTAAAAATTTTAAA
1 TTAATTAAAAAATTTAAA
15213 TTAATTA
1 TTAATTA
15220 CTCATTGAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TTAATTAAAAAATTTAAA
Found at i:15272 original size:15 final size:16
Alignment explanation
Indices: 15246--15277 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
15236 AGTAAAATCG
15246 TTTCTCTTTTTTCTTT
1 TTTCTCTTTTTTCTTT
15262 TTTCT-TTTTTTCTTT
1 TTTCTCTTTTTTCTTT
15277 T
1 T
15278 CCCATTTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTCTCTTTTTTCTTT
Found at i:15499 original size:37 final size:37
Alignment explanation
Indices: 15449--15523 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
15439 AAATGATTAA
15449 AATGTAATTCATTTCAAATAAAAGTACCTATTTTTAT
1 AATGTAATTCATTTCAAATAAAAGTACCTATTTTTAT
15486 AATGTAATTCATTTCAAATAAAAGTACCTATTTTTAT
1 AATGTAATTCATTTCAAATAAAAGTACCTATTTTTAT
15523 A
1 A
15524 CTTTATCTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.41, C:0.11, G:0.05, T:0.43
Consensus pattern (37 bp):
AATGTAATTCATTTCAAATAAAAGTACCTATTTTTAT
Found at i:15518 original size:19 final size:19
Alignment explanation
Indices: 15459--15518 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
15449 AATGTAATTC
15459 ATTTCAAATAAAAGTACCT
1 ATTTCAAATAAAAGTACCT
** * **
15478 ATTT-TTAT-AATGTAATT
1 ATTTCAAATAAAAGTACCT
15495 CATTTCAAATAAAAGTACCT
1 -ATTTCAAATAAAAGTACCT
15515 ATTT
1 ATTT
15519 TTATACTTTA
Statistics
Matches: 28, Mismatches: 10, Indels: 6
0.64 0.23 0.14
Matches are distributed among these distances:
17 6 0.21
18 6 0.21
19 10 0.36
20 6 0.21
ACGTcount: A:0.42, C:0.12, G:0.05, T:0.42
Consensus pattern (19 bp):
ATTTCAAATAAAAGTACCT
Found at i:18004 original size:24 final size:24
Alignment explanation
Indices: 17967--18215 Score: 153
Period size: 24 Copynumber: 9.9 Consensus size: 24
17957 TGCGTATATA
17967 TAAGCTGACGAGCGTAAACATGTG
1 TAAGCTGACGAGCGTAAACATGTG
* * *
17991 CAAGTTGACGAGCGTAAACGTGT-
1 TAAGCTGACGAGCGTAAACATGTG
* * * *
18014 TCAAGCTGGCGAGCATAAACGTGTATATA
1 T-AAGCTGACGAGCGTAAAC----ATGTG
*
18043 TAAGCTGACGAGCGTAAACGTGTG
1 TAAGCTGACGAGCGTAAACATGTG
* *
18067 TAAGCTGACGA-CTGTAAACGCGTATATA
1 TAAGCTGACGAGC-GTAAA--C--ATGTG
* **
18095 TAAGTTGACGAGCGTAAATGTGTG
1 TAAGCTGACGAGCGTAAACATGTG
* *
18119 CAAGCTGACGAGCGTAAACGTGTG
1 TAAGCTGACGAGCGTAAACATGTG
* *
18143 TAAGCTGACGA-CTGTAAACGCGTATATA
1 TAAGCTGACGAGC-GTAAA--C--ATGTG
* **
18171 TAAGTTGACGAGCGTAAATGTGTG
1 TAAGCTGACGAGCGTAAACATGTG
*
18195 CAAGCTGACGAGCGTAAACAT
1 TAAGCTGACGAGCGTAAACAT
18216 ATATATATAA
Statistics
Matches: 169, Mismatches: 38, Indels: 36
0.70 0.16 0.15
Matches are distributed among these distances:
23 2 0.01
24 110 0.65
26 2 0.01
28 52 0.31
29 3 0.02
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (24 bp):
TAAGCTGACGAGCGTAAACATGTG
Found at i:18005 original size:52 final size:50
Alignment explanation
Indices: 17883--18242 Score: 198
Period size: 52 Copynumber: 7.0 Consensus size: 50
17873 TTATTTGATG
* * * * *
17883 TGTGCAAGCTGACAAGAGTAAACACATATATATAAGCTAACGAGCGTAAACG
1 TGTGCAAGCTGACGAGCGT-AA-ACGTATATATAAGCTGACGAGCGTAAACA
*
17935 TGTGCAAGCT-AGCCAGCGTAAATGCGTATATATAAGCTGACGAGCGTAAACA
1 TGTGCAAGCTGA-CGAGCGTAAA--CGTATATATAAGCTGACGAGCGTAAACA
* * * * *
17987 TGTGCAAGTTGACGAGCGTAAACGTGT-T-CAAGCTGGCGAGCATAAACGTGTA
1 TGTGCAAGCTGACGAGCGTAAACGTATATATAAGCTGACGAGCGTAAAC----A
* ** * *
18039 TATATAAGCTGACGAGCGTAAACG--TGTGTAAGCTGACGA-CTGTAAACGCGTA
1 TGTGCAAGCTGACGAGCGTAAACGTATATATAAGCTGACGAGC-GTAAA--C--A
* ** * * * ** *
18091 TATATAAGTTGACGAGCGTAAA--TGTGTGCAAGCTGACGAGCGTAAACG
1 TGTGCAAGCTGACGAGCGTAAACGTATATATAAGCTGACGAGCGTAAACA
* * **
18139 TGTGTAAGCTGACGA-CTGTAAACGCGTATATATAAGTTGACGAGCGTAAATG
1 TGTGCAAGCTGACGAGC-GTAAA--CGTATATATAAGCTGACGAGCGTAAACA
* * *
18191 TGTGCAAGCTGACGAGCGTAAACATATATATATAAGCTGACAAGTGTAAACA
1 TGTGCAAGCTGACGAGCGTAAAC--GTATATATAAGCTGACGAGCGTAAACA
18243 CGTATATATA
Statistics
Matches: 247, Mismatches: 37, Indels: 48
0.74 0.11 0.14
Matches are distributed among these distances:
47 1 0.00
48 33 0.13
49 1 0.00
50 8 0.03
51 5 0.02
52 195 0.79
53 3 0.01
54 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.23
Consensus pattern (50 bp):
TGTGCAAGCTGACGAGCGTAAACGTATATATAAGCTGACGAGCGTAAACA
Found at i:18019 original size:76 final size:76
Alignment explanation
Indices: 17916--18086 Score: 236
Period size: 76 Copynumber: 2.2 Consensus size: 76
17906 ACATATATAT
* * *
17916 AAGCTAACGAGCGTAAACGTGTGCAAGCTAGCCAGCGTAAATGCGTATATATAAGCTGACGAGCG
1 AAGCTGACGAGCGTAAACGTGTGCAAGCTAGCCAGCATAAACGCGTATATATAAGCTGACGAGCG
17981 TAAACATGTGC
66 TAAACATGTGC
* * * * *
17992 AAGTTGACGAGCGTAAACGTGTTCAAGCTGGCGAGCATAAACGTGTATATATAAGCTGACGAGCG
1 AAGCTGACGAGCGTAAACGTGTGCAAGCTAGCCAGCATAAACGCGTATATATAAGCTGACGAGCG
* *
18057 TAAACGTGTGT
66 TAAACATGTGC
18068 AAGCTGACGA-CTGTAAACG
1 AAGCTGACGAGC-GTAAACG
18087 CGTATATATA
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
75 1 0.01
76 82 0.99
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.21
Consensus pattern (76 bp):
AAGCTGACGAGCGTAAACGTGTGCAAGCTAGCCAGCATAAACGCGTATATATAAGCTGACGAGCG
TAAACATGTGC
Found at i:18119 original size:128 final size:128
Alignment explanation
Indices: 17909--18242 Score: 442
Period size: 128 Copynumber: 2.6 Consensus size: 128
17899 AGTAAACACA
* * *
17909 TATATATAAGCTAACGAGCGTAAACGTGTGCAAGCT-AGCCAGCGTAAATGCGTATATATAAGCT
1 TATATATAAGCTGACGAGCGTAAACGTGTGCAAGCTGA-CGAGCGTAAACGCGTATATATAAGCT
* * *
17973 GACGAGCGTAAACATGTGCAAGTTGACGAGCGTAAACGTGT-TCAAGCTGGCGAGC-ATAAACGT
65 GACGAGCGTAAACATGTGCAAGCTGACGAGCGTAAACGTGTGT-AAGCTGACGA-CTATAAACGC
18036 G
128 G
* *
18037 TATATATAAGCTGACGAGCGTAAACGTGTGTAAGCTGACGA-CTGTAAACGCGTATATATAAGTT
1 TATATATAAGCTGACGAGCGTAAACGTGTGCAAGCTGACGAGC-GTAAACGCGTATATATAAGCT
** *
18101 GACGAGCGTAAATGTGTGCAAGCTGACGAGCGTAAACGTGTGTAAGCTGACGACTGTAAACGCG
65 GACGAGCGTAAACATGTGCAAGCTGACGAGCGTAAACGTGTGTAAGCTGACGACTATAAACGCG
* * ***
18165 TATATATAAGTTGACGAGCGTAAATGTGTGCAAGCTGACGAGCGTAAACATATATATATAAGCTG
1 TATATATAAGCTGACGAGCGTAAACGTGTGCAAGCTGACGAGCGTAAACGCGTATATATAAGCTG
* *
18230 ACAAGTGTAAACA
66 ACGAGCGTAAACA
18243 CGTATATATA
Statistics
Matches: 179, Mismatches: 22, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
127 2 0.01
128 174 0.97
129 3 0.02
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.23
Consensus pattern (128 bp):
TATATATAAGCTGACGAGCGTAAACGTGTGCAAGCTGACGAGCGTAAACGCGTATATATAAGCTG
ACGAGCGTAAACATGTGCAAGCTGACGAGCGTAAACGTGTGTAAGCTGACGACTATAAACGCG
Found at i:18124 original size:76 final size:76
Alignment explanation
Indices: 18044--18292 Score: 356
Period size: 76 Copynumber: 3.2 Consensus size: 76
18034 GTGTATATAT
18044 AAGCTGACGAGCGTAAACGTGTGTAAGCTGACGACTGTAAACGCGTATATATAAGTTGACGAGCG
1 AAGCTGACGAGCGTAAACGTGTGTAAGCTGACGACTGTAAACGCGTATATATAAGTTGACGAGCG
18109 TAAATGTGTGC
66 TAAATGTGTGC
18120 AAGCTGACGAGCGTAAACGTGTGTAAGCTGACGACTGTAAACGCGTATATATAAGTTGACGAGCG
1 AAGCTGACGAGCGTAAACGTGTGTAAGCTGACGACTGTAAACGCGTATATATAAGTTGACGAGCG
18185 TAAATGTGTGC
66 TAAATGTGTGC
* * * * * * * *
18196 AAGCTGACGAGCGTAAACATATATATATAAGCTGACAAGTGTAAACACGTATATAT-AGCTGATG
1 AAGCTGACGAGCGTAAAC----GTGTGTAAGCTGACGACTGTAAACGCGTATATATAAGTTGACG
* *
18260 AGTGTAAATGTGCGC
62 AGCGTAAATGTGTGC
*
18275 AAGCTGAGGAGCGTAAAC
1 AAGCTGACGAGCGTAAAC
18293 ATATGAAAGT
Statistics
Matches: 158, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
76 94 0.59
79 36 0.23
80 28 0.18
ACGTcount: A:0.34, C:0.15, G:0.27, T:0.23
Consensus pattern (76 bp):
AAGCTGACGAGCGTAAACGTGTGTAAGCTGACGACTGTAAACGCGTATATATAAGTTGACGAGCG
TAAATGTGTGC
Found at i:18251 original size:30 final size:28
Alignment explanation
Indices: 18196--18257 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
18186 AAATGTGTGC
*
18196 AAGCTGACGAGCGTAAACATATATATAT
1 AAGCTGACAAGCGTAAACATATATATAT
* **
18224 AAGCTGACAAGTGTAAACACGTATATAT
1 AAGCTGACAAGCGTAAACATATATATAT
18252 -AGCTGA
1 AAGCTGA
18258 TGAGTGTAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 6 0.20
28 24 0.80
ACGTcount: A:0.42, C:0.15, G:0.19, T:0.24
Consensus pattern (28 bp):
AAGCTGACAAGCGTAAACATATATATAT
Found at i:22047 original size:18 final size:18
Alignment explanation
Indices: 22024--22066 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
22014 GAATATATTT
22024 TTAATTAAATAAA-TGTAA
1 TTAATTAAA-AAATTGTAA
*
22042 TTAATTAAAAAATTTTAA
1 TTAATTAAAAAATTGTAA
22060 TTAATTA
1 TTAATTA
22067 CAAATGAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 3 0.13
18 20 0.87
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (18 bp):
TTAATTAAAAAATTGTAA
Found at i:24088 original size:32 final size:32
Alignment explanation
Indices: 24052--24117 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
24042 TAGGAAAATG
24052 TTAGTAAGTGGAGCTAAACCTAGTGCCATTGC
1 TTAGTAAGTGGAGCTAAACCTAGTGCCATTGC
24084 TTAGTAAGTGGAGCTAAACCTAGTGCCATTGC
1 TTAGTAAGTGGAGCTAAACCTAGTGCCATTGC
24116 TT
1 TT
24118 GTAGTACCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (32 bp):
TTAGTAAGTGGAGCTAAACCTAGTGCCATTGC
Found at i:29953 original size:91 final size:91
Alignment explanation
Indices: 29831--30029 Score: 308
Period size: 91 Copynumber: 2.2 Consensus size: 91
29821 TTGTATATTT
*
29831 TCGTCAGCTTAGTGTGAGCAGCATCGTTAGGGAATAGTTATATGTACAGATACCGTTTCGATGGC
1 TCGTCAGCTTAGTGTGAGCAGCATCGTTAGGGAATAGTTATATGTACAGATACCGTATCGATGGC
*
29896 TGAGGTACCGCATATGTTGTGAGTCC
66 TGAGGTACCGCATATGTTGCGAGTCC
* * *
29922 TCGTTAGCTTAGTGTGAGTAGCATCGTTAGGGAATAGTTATATGTACAGATACCGTATCGATGGT
1 TCGTCAGCTTAGTGTGAGCAGCATCGTTAGGGAATAGTTATATGTACAGATACCGTATCGATGGC
* *
29987 TTAGGTATCGCATATGTTGCGAGTCC
66 TGAGGTACCGCATATGTTGCGAGTCC
** *
30013 TTATCATCTTAGTGTGA
1 TCGTCAGCTTAGTGTGA
30030 CCAATATCGT
Statistics
Matches: 97, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
91 97 1.00
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.34
Consensus pattern (91 bp):
TCGTCAGCTTAGTGTGAGCAGCATCGTTAGGGAATAGTTATATGTACAGATACCGTATCGATGGC
TGAGGTACCGCATATGTTGCGAGTCC
Found at i:31893 original size:26 final size:26
Alignment explanation
Indices: 31864--31929 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 26
31854 AAAAAAAATC
31864 ATAAAAAAAAAACAGAAAAAGAG-TTT
1 ATAAAAAAAAAA-AGAAAAAGAGATTT
**
31890 ATAAAATGAAAAAGAAAAAGAGATTT
1 ATAAAAAAAAAAAGAAAAAGAGATTT
31916 -TCAAATAAAAAAAA
1 AT-AAA-AAAAAAAA
31930 ATCAATAGAC
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
25 11 0.33
26 16 0.48
27 6 0.18
ACGTcount: A:0.70, C:0.03, G:0.11, T:0.17
Consensus pattern (26 bp):
ATAAAAAAAAAAAGAAAAAGAGATTT
Found at i:31921 original size:25 final size:24
Alignment explanation
Indices: 31867--31930 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 24
31857 AAAAATCATA
*
31867 AAAAAAAAACAGAAAAAGAGTTTAT
1 AAAATAAAA-AGAAAAAGAGTTTAT
31892 AAAATGAAAAAGAAAAAGAGATTT-T
1 AAAAT-AAAAAGAAAAAGAG-TTTAT
*
31917 CAAATAAAAA-AAAA
1 AAAATAAAAAGAAAA
31931 TCAATAGACC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
23 4 0.11
24 5 0.14
25 19 0.54
26 7 0.20
ACGTcount: A:0.70, C:0.03, G:0.11, T:0.16
Consensus pattern (24 bp):
AAAATAAAAAGAAAAAGAGTTTAT
Found at i:32586 original size:13 final size:13
Alignment explanation
Indices: 32569--32611 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
32559 CACATTTGTA
32569 TTTTTTATTTCATG
1 TTTTTT-TTTCATG
* *
32583 TTTTTTTTTTAAG
1 TTTTTTTTTCATG
32596 TTTTTTTTTCAT-
1 TTTTTTTTTCATG
32608 TTTT
1 TTTT
32612 AATTAATGGT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
12 4 0.16
13 15 0.60
14 6 0.24
ACGTcount: A:0.12, C:0.05, G:0.05, T:0.79
Consensus pattern (13 bp):
TTTTTTTTTCATG
Found at i:33485 original size:25 final size:25
Alignment explanation
Indices: 33457--33504 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
33447 TTTCTTATCT
*
33457 CAATTTCAC-CCTAATAAATTTTTGA
1 CAATTTCACTCCT-ATAAAATTTTGA
*
33482 CAATTTTACTCCTATAAAATTTT
1 CAATTTCACTCCTATAAAATTTT
33505 AACGATTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 17 0.85
26 3 0.15
ACGTcount: A:0.35, C:0.19, G:0.02, T:0.44
Consensus pattern (25 bp):
CAATTTCACTCCTATAAAATTTTGA
Found at i:42071 original size:6 final size:6
Alignment explanation
Indices: 42051--42081 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
42041 TGTACAACTC
42051 TTATAT TTAATAT TTATAT TTATAT TTATAT
1 TTATAT TT-ATAT TTATAT TTATAT TTATAT
42082 ATGTTCATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (6 bp):
TTATAT
Found at i:42221 original size:14 final size:14
Alignment explanation
Indices: 42198--42232 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
42188 CCTACGGTAT
42198 CTAATATGAGTTTA
1 CTAATATGAGTTTA
*
42212 CTAATCTGAGTTTA
1 CTAATATGAGTTTA
42226 CATAATA
1 C-TAATA
42233 AGAGCAACTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.40
Consensus pattern (14 bp):
CTAATATGAGTTTA
Found at i:43729 original size:4 final size:4
Alignment explanation
Indices: 43682--43737 Score: 58
Period size: 4 Copynumber: 14.0 Consensus size: 4
43672 TAAACAAGAC
* * * * * *
43682 CTCT CTCC CTCT CTCC CTCT CTCC CTCT CTCC CTCC CTCC CTCT CTCT
1 CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT
43730 CTCT CTCT
1 CTCT CTCT
43738 GTGATTACAA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
4 44 1.00
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (4 bp):
CTCT
Found at i:43737 original size:8 final size:8
Alignment explanation
Indices: 43681--43736 Score: 94
Period size: 8 Copynumber: 7.0 Consensus size: 8
43671 ATAAACAAGA
43681 CCTCTCTC
1 CCTCTCTC
43689 CCTCTCTC
1 CCTCTCTC
43697 CCTCTCTC
1 CCTCTCTC
43705 CCTCTCTC
1 CCTCTCTC
*
43713 CCTCCCTC
1 CCTCTCTC
43721 CCTCTCTC
1 CCTCTCTC
*
43729 TCTCTCTC
1 CCTCTCTC
43737 TGTGATTACA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 45 1.00
ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38
Consensus pattern (8 bp):
CCTCTCTC
Found at i:44405 original size:62 final size:62
Alignment explanation
Indices: 44320--44445 Score: 234
Period size: 62 Copynumber: 2.0 Consensus size: 62
44310 ATGAGTAAAT
44320 ATTTATCAAAACGACGTAATTTTACTTTTTAACTTAATGGTTTTGACTTTTAACTTTAAAAA
1 ATTTATCAAAACGACGTAATTTTACTTTTTAACTTAATGGTTTTGACTTTTAACTTTAAAAA
* *
44382 ATTTATTAAAACGACGTAGTTTTACTTTTTAACTTAATGGTTTTGACTTTTAACTTTAAAAA
1 ATTTATCAAAACGACGTAATTTTACTTTTTAACTTAATGGTTTTGACTTTTAACTTTAAAAA
44444 AT
1 AT
44446 GTAAACATTT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.35, C:0.10, G:0.09, T:0.46
Consensus pattern (62 bp):
ATTTATCAAAACGACGTAATTTTACTTTTTAACTTAATGGTTTTGACTTTTAACTTTAAAAA
Found at i:44556 original size:31 final size:31
Alignment explanation
Indices: 44521--44579 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
44511 GTGTAATTCA
44521 TATTCGAGTTAAAACGAAAAACTTAATTTTT
1 TATTCGAGTTAAAACGAAAAACTTAATTTTT
* ** *
44552 TATTCGAGTTGATTCGAATAACTTAATT
1 TATTCGAGTTAAAACGAAAAACTTAATT
44580 AACTCAAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.37, C:0.10, G:0.12, T:0.41
Consensus pattern (31 bp):
TATTCGAGTTAAAACGAAAAACTTAATTTTT
Found at i:45175 original size:21 final size:20
Alignment explanation
Indices: 45138--45176 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
45128 TCAAATATTG
**
45138 ATAGTTATTTTTTAAAAACT
1 ATAGTTATTTTGAAAAAACT
45158 ATAGTCTATTTTGAAAAAA
1 ATAGT-TATTTTGAAAAAA
45177 AAATTAATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.44, C:0.05, G:0.08, T:0.44
Consensus pattern (20 bp):
ATAGTTATTTTGAAAAAACT
Found at i:46701 original size:22 final size:22
Alignment explanation
Indices: 46671--46719 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
46661 ATCTATGATT
* *
46671 CAACGAAGTAATTAAATATATG
1 CAACAAAGTAATTAAACATATG
46693 CAACAAAGTAATTAAACATATG
1 CAACAAAGTAATTAAACATATG
46715 CAACA
1 CAACA
46720 TGCAGCTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.53, C:0.14, G:0.10, T:0.22
Consensus pattern (22 bp):
CAACAAAGTAATTAAACATATG
Found at i:48128 original size:24 final size:24
Alignment explanation
Indices: 48085--48159 Score: 105
Period size: 24 Copynumber: 3.1 Consensus size: 24
48075 AGTTTGACTC
*
48085 AAACAAATAAACATAGTTTAATTG
1 AAACAAATAAACAGAGTTTAATTG
* *
48109 AAACAAATAAATAGAATTTAATTG
1 AAACAAATAAACAGAGTTTAATTG
* *
48133 AAACAATTAAACAGAGTTTAACTG
1 AAACAAATAAACAGAGTTTAATTG
48157 AAA
1 AAA
48160 GATTATTTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.56, C:0.08, G:0.09, T:0.27
Consensus pattern (24 bp):
AAACAAATAAACAGAGTTTAATTG
Found at i:50136 original size:24 final size:24
Alignment explanation
Indices: 50093--50167 Score: 105
Period size: 24 Copynumber: 3.1 Consensus size: 24
50083 AGTTTGACTT
*
50093 AAACAAATAAACATAGTTTAATTG
1 AAACAAATAAACAGAGTTTAATTG
* *
50117 AAACAAATAAATAGATTTTAATTG
1 AAACAAATAAACAGAGTTTAATTG
* *
50141 AAACAATTAAACAGAGTTTAACTG
1 AAACAAATAAACAGAGTTTAATTG
50165 AAA
1 AAA
50168 GATTATTTCT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.55, C:0.08, G:0.09, T:0.28
Consensus pattern (24 bp):
AAACAAATAAACAGAGTTTAATTG
Found at i:51964 original size:22 final size:21
Alignment explanation
Indices: 51913--51997 Score: 116
Period size: 21 Copynumber: 4.0 Consensus size: 21
51903 CAAACAATGA
51913 CAAAAAGTATTGATACCTTTT
1 CAAAAAGTATTGATACCTTTT
*
51934 CAAAAAGTATTTATACCTTTT
1 CAAAAAGTATTGATACCTTTT
*
51955 ACGAAAAGTATTGATACCTTTT
1 -CAAAAAGTATTGATACCTTTT
* * *
51977 TAAAAAGTATCGATAACTTTT
1 CAAAAAGTATTGATACCTTTT
51998 ACCAGGCATC
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
21 37 0.66
22 19 0.34
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (21 bp):
CAAAAAGTATTGATACCTTTT
Found at i:51997 original size:43 final size:43
Alignment explanation
Indices: 51915--51999 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 43
51905 AACAATGACA
** *
51915 AAAAGTATTGATACCTTTTCAAAAAGTATTTATACCTTTTACG
1 AAAAGTATTGATACCTTTTCAAAAAGTATCGATAACTTTTACG
*
51958 AAAAGTATTGATACCTTTTTAAAAAGTATCGATAACTTTTAC
1 AAAAGTATTGATACCTTTTCAAAAAGTATCGATAACTTTTAC
52000 CAGGCATCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (43 bp):
AAAAGTATTGATACCTTTTCAAAAAGTATCGATAACTTTTACG
Found at i:59350 original size:22 final size:22
Alignment explanation
Indices: 59323--59377 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
59313 TCGATGACCA
* *
59323 GCCGTTGACCGACTATTGACCG
1 GCCGTTGACCGACCATTGACAG
* *
59345 GTCGTTGACCGACCGTTGACAG
1 GCCGTTGACCGACCATTGACAG
59367 GCCGTTGACCG
1 GCCGTTGACCG
59378 TTGACTTTTC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.16, C:0.31, G:0.31, T:0.22
Consensus pattern (22 bp):
GCCGTTGACCGACCATTGACAG
Found at i:59352 original size:11 final size:11
Alignment explanation
Indices: 59317--59377 Score: 59
Period size: 11 Copynumber: 5.5 Consensus size: 11
59307 GTCAAATCGA
*
59317 TGACCAGCCGT
1 TGACCGGCCGT
* **
59328 TGACCGACTAT
1 TGACCGGCCGT
*
59339 TGACCGGTCGT
1 TGACCGGCCGT
*
59350 TGACCGACCGT
1 TGACCGGCCGT
*
59361 TGACAGGCCGT
1 TGACCGGCCGT
59372 TGACCG
1 TGACCG
59378 TTGACTTTTC
Statistics
Matches: 37, Mismatches: 13, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
11 37 1.00
ACGTcount: A:0.18, C:0.31, G:0.30, T:0.21
Consensus pattern (11 bp):
TGACCGGCCGT
Found at i:60487 original size:3 final size:3
Alignment explanation
Indices: 60434--60476 Score: 72
Period size: 3 Copynumber: 15.0 Consensus size: 3
60424 TACAATTTAC
60434 ATT ATT -TT A-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
60477 TTGGATTATT
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 4 0.11
3 34 0.89
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:66746 original size:22 final size:22
Alignment explanation
Indices: 66721--66782 Score: 61
Period size: 23 Copynumber: 2.8 Consensus size: 22
66711 AAAATAATAT
* **
66721 AATTTTAATTTAATCTTTTAAA
1 AATTTTAATTTAATATCGTAAA
* *
66743 AATTATTATTTTATTATCGTAAA
1 AATT-TTAATTTAATATCGTAAA
*
66766 AATTATAATTTAATATC
1 AATTTTAATTTAATATC
66783 TACACCCAAA
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
22 14 0.45
23 17 0.55
ACGTcount: A:0.42, C:0.05, G:0.02, T:0.52
Consensus pattern (22 bp):
AATTTTAATTTAATATCGTAAA
Found at i:66754 original size:28 final size:28
Alignment explanation
Indices: 66700--66755 Score: 69
Period size: 30 Copynumber: 2.0 Consensus size: 28
66690 AAAAATATAC
66700 TTTAACTCTTAAAAATAATATAATTTTAA
1 TTTAACTCTTAAAAAT-ATATAATTTTAA
* *
66729 TTTAATCTTTTAAAAAT-TATTATTTTA
1 TTTAA-CTCTTAAAAATATATAATTTTA
66756 TTATCGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 9 0.38
29 5 0.21
30 10 0.42
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (28 bp):
TTTAACTCTTAAAAATATATAATTTTAA
Found at i:70580 original size:40 final size:40
Alignment explanation
Indices: 70527--70606 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
70517 GAATGAAAGT
70527 AAGAGAGATTATAATTTTTTTTTGATGAATTATAAGGGGA
1 AAGAGAGATTATAATTTTTTTTTGATGAATTATAAGGGGA
70567 AAGAGAGATTATAATTTTTTTTTGATGAATTATAAGGGGA
1 AAGAGAGATTATAATTTTTTTTTGATGAATTATAAGGGGA
70607 GGGCAAATTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.40
Consensus pattern (40 bp):
AAGAGAGATTATAATTTTTTTTTGATGAATTATAAGGGGA
Found at i:72757 original size:21 final size:24
Alignment explanation
Indices: 72731--72779 Score: 68
Period size: 21 Copynumber: 2.2 Consensus size: 24
72721 AAAAGCTATC
*
72731 TACAAATTCA-ATC-TCT-AAGAT
1 TACAAAATCATATCTTCTAAAGAT
72752 TACAAAATCATATCTTCTAAAGAT
1 TACAAAATCATATCTTCTAAAGAT
72776 TACA
1 TACA
72780 TATCAAATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 9 0.38
22 3 0.12
23 3 0.12
24 9 0.38
ACGTcount: A:0.45, C:0.18, G:0.04, T:0.33
Consensus pattern (24 bp):
TACAAAATCATATCTTCTAAAGAT
Found at i:77809 original size:21 final size:24
Alignment explanation
Indices: 77783--77831 Score: 68
Period size: 21 Copynumber: 2.2 Consensus size: 24
77773 AAAAGCTATC
*
77783 TACAAATTCA-ATC-TCT-AAGAT
1 TACAAAATCATATCTTCTAAAGAT
77804 TACAAAATCATATCTTCTAAAGAT
1 TACAAAATCATATCTTCTAAAGAT
77828 TACA
1 TACA
77832 TATCAAATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 9 0.38
22 3 0.12
23 3 0.12
24 9 0.38
ACGTcount: A:0.45, C:0.18, G:0.04, T:0.33
Consensus pattern (24 bp):
TACAAAATCATATCTTCTAAAGAT
Found at i:79545 original size:31 final size:33
Alignment explanation
Indices: 79510--79578 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 33
79500 CTAAACTTTT
79510 TTTTTGT-CCAATTTGGTA-CTCAAAATTGACA-
1 TTTTTGTACCAATTTGGTACCT-AAAATTGACAC
* *
79541 TTTTTGTACTAATTTGGTACCTAAACTTGACAC
1 TTTTTGTACCAATTTGGTACCTAAAATTGACAC
79574 TTTTT
1 TTTTT
79579 TTTTAAGTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
31 7 0.21
32 19 0.58
33 7 0.21
ACGTcount: A:0.26, C:0.16, G:0.12, T:0.46
Consensus pattern (33 bp):
TTTTTGTACCAATTTGGTACCTAAAATTGACAC
Found at i:80275 original size:31 final size:29
Alignment explanation
Indices: 80205--80275 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 29
80195 TTTAATAGTT
* *
80205 TATATTTTTATAATTTTAAAAAAATTAAA
1 TATAATTTTATAATTTTAAAAAAAATAAA
* *
80234 TAAAATTTTTATCATTTTAAAAAAAGATAAA
1 TATAA-TTTTATAATTTTAAAAAAA-ATAAA
80265 GTATAATTTTA
1 -TATAATTTTA
80276 CTATTATAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
29 3 0.09
30 18 0.53
31 9 0.26
32 4 0.12
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (29 bp):
TATAATTTTATAATTTTAAAAAAAATAAA
Found at i:80987 original size:18 final size:19
Alignment explanation
Indices: 80959--80994 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
80949 TCATTATAAA
*
80959 AAAATAAAATTCATTTTTC
1 AAAATAAAATTAATTTTTC
80978 AAAA-AAAATTAATTTTT
1 AAAATAAAATTAATTTTT
80995 ACTATCATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (19 bp):
AAAATAAAATTAATTTTTC
Found at i:85683 original size:14 final size:14
Alignment explanation
Indices: 85666--85715 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
85656 GCTTGTCCTC
85666 TTGTTTTTGTCTTG
1 TTGTTTTTGTCTTG
85680 TTGTTCTTTGTCTT-
1 TTGTT-TTTGTCTTG
*
85694 TTGTTTTTGCCTCTG
1 TTGTTTTTGTCT-TG
85709 -TGTTTTT
1 TTGTTTTT
85716 TTTTTCTCTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 6 0.19
14 18 0.56
15 8 0.25
ACGTcount: A:0.00, C:0.12, G:0.18, T:0.70
Consensus pattern (14 bp):
TTGTTTTTGTCTTG
Found at i:85992 original size:20 final size:20
Alignment explanation
Indices: 85962--85999 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
85952 ATTGAGTTTG
85962 GGTAGTTGGGTTGTAATTTTA
1 GGTAGTTGGGTTG-AATTTTA
85983 GGTA-TTGGGTTGAATTT
1 GGTAGTTGGGTTGAATTT
86000 GGTTTTTCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 8 0.47
21 4 0.24
ACGTcount: A:0.18, C:0.00, G:0.34, T:0.47
Consensus pattern (20 bp):
GGTAGTTGGGTTGAATTTTA
Found at i:86609 original size:210 final size:209
Alignment explanation
Indices: 86236--87407 Score: 1394
Period size: 210 Copynumber: 5.6 Consensus size: 209
86226 AAGATGAGAA
* * *
86236 TTTGAAGTTTT-ACTCACATAGAGCTTCGCTTTATTGAATTGGTCTACTTCTCTGTATCTCATCA
1 TTTGAAGTTTTCACTCACATTGAGCTT-GCTTCATTGAATTGATCTACTTCTCTGTATCTCATCA
** * * *
86300 GGAAGATGATTGCTTCATTATTTTGGTCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGTT
65 GGAAGATGACCGCTTCATTGTTTTGATCCACTTCTCTGTATCTCATCAGGAAGACAGATTTGGTT
*
86365 CACTTCTCTGCATCTCGTCA-AGAAGATGACCACTTTATTGCTTTAGTCCACTTCTCTGTATCTC
130 CACTTCTCTGCATCTCGTCAGA-AAGATGACCACTTTATTGCTTTAGCCCACTTCTCTGTATCTC
*
86429 ATCAAGAAGATGGGGG
194 ATCAGGAAGATGGGGG
* * *
86445 TTTGAAGTTTTCACTCACATTGAGCTCTACTTCATTGAATTGTTCTACTTCTCTGTATCTCATTA
1 TTTGAAGTTTTCACTCACATTGAGCT-TGCTTCATTGAATTGATCTACTTCTCTGTATCTCATCA
* * * * *
86510 GGAAGATTACCACTTCATTGTTTTGATTCACTTCTCTGTATCTCATCAAGAA-ACCAGATTTAGT
65 GGAAGATGACCGCTTCATTGTTTTGATCCACTTCTCTGTATCTCATCAGGAAGA-CAGATTTGGT
* * * * * *
86574 TCACTTCTCTGCGTCTCGTTAGAAAGATGACCACTTTATTGCTTCAACTCACTTCTCTGTATCTT
129 TCACTTCTCTGCATCTCGTCAGAAAGATGACCACTTTATTGCTTTAGCCCACTTCTCTGTATCTC
*
86639 ATCAGGAAGATGAGGG
194 ATCAGGAAGATGGGGG
* * * * * **
86655 TTT-AAG-GTTCACTCATATTAAACTTTGCTTCATTGAATTGGTCTACTTCTCTGTAAATCATCA
1 TTTGAAGTTTTCACTCACATTGAGC-TTGCTTCATTGAATTGATCTACTTCTCTGTATCTCATCA
* * * * * **
86718 GGAAGTTGACCACTTCATTGTTTCGATCCACTTCTCTATATCTCATCAAGAAGATGGATTTGGTT
65 GGAAGATGACCGCTTCATTGTTTTGATCCACTTCTCTGTATCTCATCAGGAAGACAGATTTGGTT
* * * *
86783 CACTTTTCTGCATCTCGTCA-AGAAGATGACCAGTTTATTTC-TTCGACCCACTTCTCTGTATCT
130 CACTTCTCTGCATCTCGTCAGA-AAGATGACCACTTTATTGCTTTAG-CCCACTTCTCTGTATCT
*
86846 CATTAGGAAGATGGGGG
193 CATCAGGAAGATGGGGG
* *
86863 TTTGAAGTTTTCACTCATATTGAGCTTCGTTTCATTGAATTGATCTACTTCTCTGTATCTCATCA
1 TTTGAAGTTTTCACTCACATTGAGCTT-GCTTCATTGAATTGATCTACTTCTCTGTATCTCATCA
* * * *
86928 GGAAGATGACCGCTTCATTATTTTGATCCACTTCTTTGTATCTTATCAGGAAGA-TGAATTTGGT
65 GGAAGATGACCGCTTCATTGTTTTGATCCACTTCTCTGTATCTCATCAGGAAGACAG-ATTTGGT
* * * * *
86992 TCACTTCTTTGCATCTCGTCAGGAAGATGACCACTTTATTACTTCAACCCACTTCTCTGTATCTC
129 TCACTTCTCTGCATCTCGTCAGAAAGATGACCACTTTATTGCTTTAGCCCACTTCTCTGTATCTC
* * *
87057 ATCAGGAATATAGGAG
194 ATCAGGAAGATGGGGG
* *
87073 CTTGAAGTTTTCACTCACATTGAGCTCCGCTTCATTGAATTGATCTACTTCTCTGTATCTCATCA
1 TTTGAAGTTTTCACTCACATTGAGCT-TGCTTCATTGAATTGATCTACTTCTCTGTATCTCATCA
* * *
87138 AGAAGATGACTGCTTCATTGTTTTGATCCACTTCTCTGTATCTCATTAGGAAGACAGATTTGGTT
65 GGAAGATGACCGCTTCATTGTTTTGATCCACTTCTCTGTATCTCATCAGGAAGACAGATTTGGTT
* * * *
87203 CACTTCTCTACATCTCGTCAGGAAGATGACCACTTTATTGC-TTCGACCCACTTCTTTGTATCTC
130 CACTTCTCTGCATCTCGTCAGAAAGATGACCACTTTATTGCTTTAG-CCCACTTCTCTGTATCTC
* *
87267 ATAAGGAAGATGGAGG
194 ATCAGGAAGATGGGGG
* ** * * *
87283 TTTGAA-TTTTCACTCACATTGAGCTTCGCTTCATCGGTTTAATCAACTTCTCTATATCTCATCA
1 TTTGAAGTTTTCACTCACATTGAGCTT-GCTTCATTGAATTGATCTACTTCTCTGTATCTCATCA
* * * * * * * **
87347 GAAAGATGATCGCCTCATTATTTTAATACACCTT-TTTGTATCTCATCAAAAAGACAGATTT
65 GGAAGATGACCGCTTCATTGTTTTGATCCA-CTTCTCTGTATCTCATCAGGAAGACAGATTT
87408 AGTCTGCCTT
Statistics
Matches: 820, Mismatches: 124, Indels: 38
0.84 0.13 0.04
Matches are distributed among these distances:
207 2 0.00
208 168 0.20
209 119 0.15
210 527 0.64
211 4 0.00
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (209 bp):
TTTGAAGTTTTCACTCACATTGAGCTTGCTTCATTGAATTGATCTACTTCTCTGTATCTCATCAG
GAAGATGACCGCTTCATTGTTTTGATCCACTTCTCTGTATCTCATCAGGAAGACAGATTTGGTTC
ACTTCTCTGCATCTCGTCAGAAAGATGACCACTTTATTGCTTTAGCCCACTTCTCTGTATCTCAT
CAGGAAGATGGGGG
Found at i:86634 original size:85 final size:86
Alignment explanation
Indices: 86486--86642 Score: 208
Period size: 85 Copynumber: 1.8 Consensus size: 86
86476 TCATTGAATT
* * * * ** *
86486 GTTCTACTTCTCTGTATCTCATTAGGAAGATTACCACTTCATTGTTTTGATTCACTTCTCTGTAT
1 GTTCTACTTCTCTGCATCTCATTAGAAAGATGACCACTTCATTGCTTCAACTCACTTCTCTGTAT
86551 CTCATCAAGAAACCAGATTTA
66 CTCATCAAGAAACCAGATTTA
* * *
86572 GTTC-ACTTCTCTGCGTCTCGTTAGAAAGATGACCACTTTATTGCTTCAACTCACTTCTCTGTAT
1 GTTCTACTTCTCTGCATCTCATTAGAAAGATGACCACTTCATTGCTTCAACTCACTTCTCTGTAT
*
86636 CTTATCA
66 CTCATCA
86643 GGAAGATGAG
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
85 56 0.93
86 4 0.07
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.40
Consensus pattern (86 bp):
GTTCTACTTCTCTGCATCTCATTAGAAAGATGACCACTTCATTGCTTCAACTCACTTCTCTGTAT
CTCATCAAGAAACCAGATTTA
Found at i:86945 original size:48 final size:48
Alignment explanation
Indices: 86893--86984 Score: 132
Period size: 48 Copynumber: 1.9 Consensus size: 48
86883 TGAGCTTCGT
*
86893 TTCATTGA-ATTGATCTACTTCTCTGTATCTCATCAGGAAGATGACCGC
1 TTCATT-ATATTGATCCACTTCTCTGTATCTCATCAGGAAGATGACCGC
* * *
86941 TTCATTATTTTGATCCACTTCTTTGTATCTTATCAGGAAGATGA
1 TTCATTATATTGATCCACTTCTCTGTATCTCATCAGGAAGATGA
86985 ATTTGGTTCA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
47 1 0.03
48 38 0.97
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.40
Consensus pattern (48 bp):
TTCATTATATTGATCCACTTCTCTGTATCTCATCAGGAAGATGACCGC
Found at i:87047 original size:418 final size:420
Alignment explanation
Indices: 86237--87410 Score: 1537
Period size: 418 Copynumber: 2.8 Consensus size: 420
86227 AGATGAGAAT
* * * *
86237 TTGAAGT-TTTACTCACA-TAGAGCTTCGCTTTATTGAATTGGTCTACTTCTCTGTATCTCATCA
1 TTGAAGTGTTCACTCACATTA-AACTCCGCTTCATTGAATTGGTCTACTTCTCTGTATCTCATCA
* * *
86300 GGAAGATGATTGCTTCATTATTTTGGTCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGTT
65 GGAAGATGACTGCTTCATTGTTTTGATCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGTT
* *
86365 CACTTCTCTGCATCTCGTCAAGAAGATGACCACTTTATTGCTT-TAGTCCACTTCTCTGTATCTC
130 CACTTCTCTGCATCTCGTCAAGAAGATGACCACTTTATTGCTTCGA-CCCACTTCTCTGTATCTC
*
86429 ATCAA-GAAGATGGGGGTTTGAAGTTTTCACTCACATTGAGC-TC-TACTTCATTGAATTGTTCT
194 AT-AAGGAAGATGGGGGTTTGAAGTTTTCACTCACATTGAGCTTCGT--TTCATTGAATTGATCT
* * * * * *
86491 ACTTCTCTGTATCTCATTAGGAAGATTACCACTTCATTGTTTTGATTCACTTCTCTGTATCTCAT
256 ACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTATTTTGATACACTTCTTTGTATCTCAT
* * *
86556 CAAGAAACCAGATTTAGTTCACTTCTCTGCGTCTCGTTAGAAAGATGACCACTTTATTGCTTCAA
321 CAAGAAACCAGATTTAGTTCACTTCTCTGCATCTCGTCAGAAAGATGACCACTTTATTACTTCAA
* *
86621 CTCACTTCTCTGTATCTTATCAGGAAGATGAGG-G-
386 CCCACTTCTCTGTATCTCATCAGGAAGAT-AGGAGC
* * ** **
86655 TTTAAG-GTTCACTCATATTAAACTTTGCTTCATTGAATTGGTCTACTTCTCTGTAAATCATCAG
1 TTGAAGTGTTCACTCACATTAAACTCCGCTTCATTGAATTGGTCTACTTCTCTGTATCTCATCAG
* ** * * * *
86719 GAAGTTGACCACTTCATTGTTTCGATCCACTTCTCTATATCTCATCAAGAAGATGGATTTGGTTC
66 GAAGATGACTGCTTCATTGTTTTGATCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGTTC
* * *
86784 ACTTTTCTGCATCTCGTCAAGAAGATGACCAGTTTATTTCTTCGACCCACTTCTCTGTATCTCAT
131 ACTTCTCTGCATCTCGTCAAGAAGATGACCACTTTATTGCTTCGACCCACTTCTCTGTATCTCAT
* *
86849 TAGGAAGATGGGGGTTTGAAGTTTTCACTCATATTGAGCTTCGTTTCATTGAATTGATCTACTTC
196 AAGGAAGATGGGGGTTTGAAGTTTTCACTCACATTGAGCTTCGTTTCATTGAATTGATCTACTTC
* * *
86914 TCTGTATCTCATCAGGAAGATGACCGCTTCATTATTTTGATCCACTTCTTTGTATCTTATCAGGA
261 TCTGTATCTCATCAGGAAGATGACCGCTTCATTATTTTGATACACTTCTTTGTATCTCATCAAGA
** * * *
86979 AGATGA-ATTTGGTTCACTTCTTTGCATCTCGTCAGGAAGATGACCACTTTATTACTTCAACCCA
326 A-ACCAGATTTAGTTCACTTCTCTGCATCTCGTCAGAAAGATGACCACTTTATTACTTCAACCCA
*
87043 CTTCTCTGTATCTCATCAGGAATATAGGAGC
390 CTTCTCTGTATCTCATCAGGAAGATAGGAGC
* * * * *
87074 TTGAAGTTTTCACTCACATTGAGCTCCGCTTCATTGAATTGATCTACTTCTCTGTATCTCATCAA
1 TTGAAGTGTTCACTCACATTAAACTCCGCTTCATTGAATTGGTCTACTTCTCTGTATCTCATCAG
* *
87139 GAAGATGACTGCTTCATTGTTTTGATCCACTTCTCTGTATCTCATTAGGAAGACAGATTTGGTTC
66 GAAGATGACTGCTTCATTGTTTTGATCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGTTC
* * *
87204 ACTTCTCTACATCTCGTCAGGAAGATGACCACTTTATTGCTTCGACCCACTTCTTTGTATCTCAT
131 ACTTCTCTGCATCTCGTCAAGAAGATGACCACTTTATTGCTTCGACCCACTTCTCTGTATCTCAT
* * * ** * *
87269 AAGGAAGATGGAGGTTTGAA-TTTTCACTCACATTGAGCTTCGCTTCATCGGTTTAATCAACTTC
196 AAGGAAGATGGGGGTTTGAAGTTTTCACTCACATTGAGCTTCGTTTCATTGAATTGATCTACTTC
* * * * *
87333 TCTATATCTCATCAGAAAGATGATCGCCTCATTATTTTAATACACCTT-TTTGTATCTCATCAA-
261 TCTGTATCTCATCAGGAAGATGACCGCTTCATTATTTTGATACA-CTTCTTTGTATCTCATCAAG
*
87396 AAAGACAGATTTAGT
325 AAA-CCAGATTTAGT
87411 CTGCCTTTTC
Statistics
Matches: 652, Mismatches: 91, Indels: 25
0.85 0.12 0.03
Matches are distributed among these distances:
417 5 0.01
418 356 0.55
419 106 0.16
420 185 0.28
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (420 bp):
TTGAAGTGTTCACTCACATTAAACTCCGCTTCATTGAATTGGTCTACTTCTCTGTATCTCATCAG
GAAGATGACTGCTTCATTGTTTTGATCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGTTC
ACTTCTCTGCATCTCGTCAAGAAGATGACCACTTTATTGCTTCGACCCACTTCTCTGTATCTCAT
AAGGAAGATGGGGGTTTGAAGTTTTCACTCACATTGAGCTTCGTTTCATTGAATTGATCTACTTC
TCTGTATCTCATCAGGAAGATGACCGCTTCATTATTTTGATACACTTCTTTGTATCTCATCAAGA
AACCAGATTTAGTTCACTTCTCTGCATCTCGTCAGAAAGATGACCACTTTATTACTTCAACCCAC
TTCTCTGTATCTCATCAGGAAGATAGGAGC
Found at i:87053 original size:85 final size:85
Alignment explanation
Indices: 86909--87064 Score: 213
Period size: 85 Copynumber: 1.8 Consensus size: 85
86899 GAATTGATCT
* * * ** * * *
86909 ACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTATTTTGATCCACTTCTTTGTATCTTAT
1 ACTTCTCTGCATCTCATCAGGAAGATGACCACTTCATTACTTCAACCCACTTCTCTGTATCTCAT
86974 CAGGAAGATGAATTTGGTTC
66 CAGGAAGATGAATTTGGTTC
* * *
86994 ACTTCTTTGCATCTCGTCAGGAAGATGACCACTTTATTACTTCAACCCACTTCTCTGTATCTCAT
1 ACTTCTCTGCATCTCATCAGGAAGATGACCACTTCATTACTTCAACCCACTTCTCTGTATCTCAT
87059 CAGGAA
66 CAGGAA
87065 TATAGGAGCT
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
85 60 1.00
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (85 bp):
ACTTCTCTGCATCTCATCAGGAAGATGACCACTTCATTACTTCAACCCACTTCTCTGTATCTCAT
CAGGAAGATGAATTTGGTTC
Found at i:87263 original size:85 final size:85
Alignment explanation
Indices: 87119--87276 Score: 208
Period size: 85 Copynumber: 1.9 Consensus size: 85
87109 GAATTGATCT
** ** * * *
87119 ACTTCTCTGTATCTCATCAAGAAGATGACTGCTTCATTGTTTTGATCCACTTCTCTGTATCTCAT
1 ACTTCTCTACATCTCATCAAGAAGATGACCACTTCATTGCTTCGACCCACTTCTCTGTATCTCAT
*
87184 TAGGAAGACAGATTTGGTTC
66 AAGGAAGACAGATTTGGTTC
* * * *
87204 ACTTCTCTACATCTCGTCAGGAAGATGACCACTTTATTGCTTCGACCCACTTCTTTGTATCTCAT
1 ACTTCTCTACATCTCATCAAGAAGATGACCACTTCATTGCTTCGACCCACTTCTCTGTATCTCAT
87269 AAGGAAGA
66 AAGGAAGA
87277 TGGAGGTTTG
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
85 61 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (85 bp):
ACTTCTCTACATCTCATCAAGAAGATGACCACTTCATTGCTTCGACCCACTTCTCTGTATCTCAT
AAGGAAGACAGATTTGGTTC
Found at i:87532 original size:41 final size:41
Alignment explanation
Indices: 87422--87735 Score: 369
Period size: 41 Copynumber: 7.6 Consensus size: 41
87412 TGCCTTTTCA
* * *
87422 ATTAGGGGTAAAAGATCGAAATGGTCTTCAATCTACCCCTCTTG
1 ATTAAGGGTAAAAGATTGAAA---TCTTCAATCTGCCCCTCTTG
* * * *
87466 ATTTAGGGCTAAAAGACTGGAATCTTCAATCTGCCCTTCTTG
1 ATTAAGGG-TAAAAGATTGAAATCTTCAATCTGCCCCTCTTG
* * *
87508 ATTAAAGGTAAAAGATTGAAATCTTCAATCTACCCTTCTTG
1 ATTAAGGGTAAAAGATTGAAATCTTCAATCTGCCCCTCTTG
* *
87549 ATTAAGGGTAAAAGATTGGAATCTTCAATCTGCCCCTATTG
1 ATTAAGGGTAAAAGATTGAAATCTTCAATCTGCCCCTCTTG
*
87590 ATT-AGGGATAAAAGACTGAAATCTTCAATCTGCCCCTCTTG
1 ATTAAGGG-TAAAAGATTGAAATCTTCAATCTGCCCCTCTTG
* * * *
87631 ACTAGGGGTAAAAGATTGGAATATTCAATCTGCCCCTCTTG
1 ATTAAGGGTAAAAGATTGAAATCTTCAATCTGCCCCTCTTG
* * * *
87672 ATTAGGGGTAAAAGACTGAAATCTTTAATCTACCCCTCTTG
1 ATTAAGGGTAAAAGATTGAAATCTTCAATCTGCCCCTCTTG
* *
87713 ACTAGGGGTAAAAGATTGAAATC
1 ATTAAGGGTAAAAGATTGAAATC
87736 ATGTAGTTTG
Statistics
Matches: 234, Mismatches: 33, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
40 4 0.02
41 187 0.80
42 27 0.12
44 6 0.03
45 10 0.04
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.31
Consensus pattern (41 bp):
ATTAAGGGTAAAAGATTGAAATCTTCAATCTGCCCCTCTTG
Found at i:87579 original size:82 final size:82
Alignment explanation
Indices: 87446--87735 Score: 411
Period size: 82 Copynumber: 3.5 Consensus size: 82
87436 ATCGAAATGG
* * * *
87446 TCTTCAATCTACCCCTCTTGATTTAGGGCTAAAAGACTGGAATCTTCAATCTGCCCTTCTTGATT
1 TCTTCAATCTACCCCTCTTGACTAAGGG-TAAAAGATTGGAATCTTCAATCTGCCCCTCTTGATT
* *
87511 AAAGGTAAAAGATTGAAA
65 AAGGGTAAAAGACTGAAA
* * *
87529 TCTTCAATCTACCCTTCTTGATTAAGGGTAAAAGATTGGAATCTTCAATCTGCCCCTATTGATT-
1 TCTTCAATCTACCCCTCTTGACTAAGGGTAAAAGATTGGAATCTTCAATCTGCCCCTCTTGATTA
87593 AGGGATAAAAGACTGAAA
66 AGGG-TAAAAGACTGAAA
* * *
87611 TCTTCAATCTGCCCCTCTTGACTAGGGGTAAAAGATTGGAATATTCAATCTGCCCCTCTTGATTA
1 TCTTCAATCTACCCCTCTTGACTAAGGGTAAAAGATTGGAATCTTCAATCTGCCCCTCTTGATTA
*
87676 GGGGTAAAAGACTGAAA
66 AGGGTAAAAGACTGAAA
* * *
87693 TCTTTAATCTACCCCTCTTGACTAGGGGTAAAAGATTGAAATC
1 TCTTCAATCTACCCCTCTTGACTAAGGGTAAAAGATTGGAATC
87736 ATGTAGTTTG
Statistics
Matches: 187, Mismatches: 18, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
81 3 0.02
82 155 0.83
83 29 0.16
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (82 bp):
TCTTCAATCTACCCCTCTTGACTAAGGGTAAAAGATTGGAATCTTCAATCTGCCCCTCTTGATTA
AGGGTAAAAGACTGAAA
Found at i:88981 original size:23 final size:24
Alignment explanation
Indices: 88955--89003 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
88945 CCTCGACCTC
88955 TTCTTTCCCCTTTC-TTTTTTCTT
1 TTCTTTCCCCTTTCTTTTTTTCTT
***
88978 TTCTTTTTTCTTTCTTTTTTTCTT
1 TTCTTTCCCCTTTCTTTTTTTCTT
89002 TT
1 TT
89004 TCATTTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (24 bp):
TTCTTTCCCCTTTCTTTTTTTCTT
Found at i:88982 original size:12 final size:12
Alignment explanation
Indices: 88965--89003 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
88955 TTCTTTCCCC
88965 TTTCTTTTTTCT
1 TTTCTTTTTTCT
88977 TTTCTTTTTTC-
1 TTTCTTTTTTCT
88988 TTTCTTTTTTTCT
1 TTTC-TTTTTTCT
89001 TTT
1 TTT
89004 TCATTTATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 4 0.16
12 18 0.72
13 3 0.12
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTCTTTTTTCT
Found at i:88987 original size:19 final size:19
Alignment explanation
Indices: 88965--89004 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
88955 TTCTTTCCCC
88965 TTTCTTT-TTTCTTTTCTTT
1 TTTCTTTCTTT-TTTTCTTT
88984 TTTCTTTCTTTTTTTCTTT
1 TTTCTTTCTTTTTTTCTTT
89003 TT
1 TT
89005 CATTTATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 17 0.85
20 3 0.15
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (19 bp):
TTTCTTTCTTTTTTTCTTT
Found at i:89014 original size:19 final size:19
Alignment explanation
Indices: 88965--89015 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
88955 TTCTTTCCCC
88965 TTTCTTT-TTTCTTTTCTTT
1 TTTCTTTATTT-TTTTCTTT
*
88984 TTTCTTTCTTTTTTTC-TT
1 TTTCTTTATTTTTTTCTTT
89002 TTTCATTTATTTTT
1 TTTC-TTTATTTTT
89016 CTTCATCGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 6 0.21
19 20 0.69
20 3 0.10
ACGTcount: A:0.04, C:0.14, G:0.00, T:0.82
Consensus pattern (19 bp):
TTTCTTTATTTTTTTCTTT
Found at i:89938 original size:12 final size:11
Alignment explanation
Indices: 89923--89958 Score: 54
Period size: 12 Copynumber: 3.1 Consensus size: 11
89913 TTTTTACCCC
89923 TCTTTTTTCTTT
1 TCTTTTTT-TTT
89935 TCTTTTTTTTT
1 TCTTTTTTTTT
89946 CTCTTTTTTTTT
1 -TCTTTTTTTTT
89958 T
1 T
89959 AATTGATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 4 0.17
12 19 0.83
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (11 bp):
TCTTTTTTTTT
Found at i:89943 original size:15 final size:14
Alignment explanation
Indices: 89925--89958 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
89915 TTTACCCCTC
*
89925 TTTTTTCTTTTCTTT
1 TTTTTTCTCTT-TTT
89940 TTTTTTCTCTTTTT
1 TTTTTTCTCTTTTT
89954 TTTTT
1 TTTTT
89959 AATTGATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (14 bp):
TTTTTTCTCTTTTT
Found at i:95099 original size:15 final size:14
Alignment explanation
Indices: 95074--95128 Score: 51
Period size: 15 Copynumber: 3.9 Consensus size: 14
95064 GCTTGTCCTC
95074 TTGTTTTTGTCTTG
1 TTGTTTTTGTCTTG
95088 TTGTTCTTTGTCTT-
1 TTGTT-TTTGTCTTG
* *
95102 TTGCTTTTGCCTCTG
1 TTGTTTTTGTCT-TG
95117 -TGTTTTTTGTCT
1 TTG-TTTTTGTCT
95129 CTTTTGCAGG
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
13 6 0.18
14 12 0.36
15 15 0.45
ACGTcount: A:0.00, C:0.15, G:0.18, T:0.67
Consensus pattern (14 bp):
TTGTTTTTGTCTTG
Found at i:95125 original size:21 final size:20
Alignment explanation
Indices: 95058--95125 Score: 52
Period size: 21 Copynumber: 3.4 Consensus size: 20
95048 ACATTTGGTA
*
95058 TTTTTTGCTTGT-CCTCTTG
1 TTTTTTGCTTTTGCCTCTTG
*
95077 -TTTTTGTCTTGTTG-TTCTTTG
1 TTTTTTG-CTT-TTGCCTC-TTG
*
95098 TCTTTTGCTTTTGCCTCTGTG
1 TTTTTTGCTTTTGCCTCT-TG
95119 TTTTTTG
1 TTTTTTG
95126 TCTCTTTTGC
Statistics
Matches: 37, Mismatches: 5, Indels: 12
0.69 0.09 0.22
Matches are distributed among these distances:
18 6 0.16
19 3 0.08
20 7 0.19
21 16 0.43
22 5 0.14
ACGTcount: A:0.00, C:0.16, G:0.18, T:0.66
Consensus pattern (20 bp):
TTTTTTGCTTTTGCCTCTTG
Found at i:95781 original size:48 final size:45
Alignment explanation
Indices: 95729--95888 Score: 147
Period size: 48 Copynumber: 3.6 Consensus size: 45
95719 GAATTGGTCT
* *
95729 ACTTCTTTGTATCTCATCAGGAAGATGATCACTTCATTATTTTGATCC
1 ACTTCTCTGTATCTCATCAGGAAGATGA-CACTT-ATTA-TTTGATTC
*
95777 ACTTCTCTGTATCTCATCAGGAAGATG------A--ATTTGGTTC
1 ACTTCTCTGTATCTCATCAGGAAGATGACACTTATTATTTGATTC
* * * *
95814 ACTTCTTTGCATCTCGTCAGGAAGATGACCACTTTATTACTTCGATTC
1 ACTTCTCTGTATCTCATCAGGAAGATGA-CAC-TTATTA-TTTGATTC
95862 ACTTCTCTGTATCTCATCAGGAAGATG
1 ACTTCTCTGTATCTCATCAGGAAGATG
95889 GGGGTTTGAA
Statistics
Matches: 90, Mismatches: 11, Indels: 22
0.73 0.09 0.18
Matches are distributed among these distances:
37 30 0.33
38 1 0.01
40 1 0.01
45 1 0.01
47 1 0.01
48 56 0.62
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (45 bp):
ACTTCTCTGTATCTCATCAGGAAGATGACACTTATTATTTGATTC
Found at i:95834 original size:85 final size:85
Alignment explanation
Indices: 95729--95888 Score: 257
Period size: 85 Copynumber: 1.9 Consensus size: 85
95719 GAATTGGTCT
* * * *
95729 ACTTCTTTGTATCTCATCAGGAAGATGATCACTTCATTATTTTGATCCACTTCTCTGTATCTCAT
1 ACTTCTTTGCATCTCATCAGGAAGATGACCACTTCATTACTTCGATCCACTTCTCTGTATCTCAT
95794 CAGGAAGATGAATTTGGTTC
66 CAGGAAGATGAATTTGGTTC
* * *
95814 ACTTCTTTGCATCTCGTCAGGAAGATGACCACTTTATTACTTCGATTCACTTCTCTGTATCTCAT
1 ACTTCTTTGCATCTCATCAGGAAGATGACCACTTCATTACTTCGATCCACTTCTCTGTATCTCAT
95879 CAGGAAGATG
66 CAGGAAGATG
95889 GGGGTTTGAA
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
85 68 1.00
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (85 bp):
ACTTCTTTGCATCTCATCAGGAAGATGACCACTTCATTACTTCGATCCACTTCTCTGTATCTCAT
CAGGAAGATGAATTTGGTTC
Found at i:95974 original size:210 final size:210
Alignment explanation
Indices: 95672--96522 Score: 1183
Period size: 210 Copynumber: 4.1 Consensus size: 210
95662 TTACATTTTG
** * * *
95672 GGAAGATGGGAATTTGAAGTTTT-ACTCACATGGAGCTTCACTTGATTGAATTGGTCTACTTCTT
1 GGAAGATGGGGGTTTGAAGTTTTCACTCACATTGAGCTTCACTTCATTGAATTGGTCTACTTCTC
* * *
95736 TGTATCTCATCAGGAAGATGATCACTTCATTATTTTGATCCACTTCTCTGTATCTCATCAGGAAG
66 TGTATCTCATCAGGAAGATAACCACTTCATTGTTTTGATCCACTTCTCTGTATCTCATCAGGAAG
* * * * **
95801 ATGAATTTGGTTCACTTCTTTGCATCTCGTCAGGAAGATGACCACTTTATTACTTCGATTCACTT
131 ATGAATTTGGTTCACTTCTCTGCATCTCATCAAGAAGATGACCACTTTATTGCTTCGACCCACTT
95866 CTCTGTATCTCATCA
196 CTCTGTATCTCATCA
95881 GGAAGATGGGGGTTTGAAGTTTTCACTCACATTGAGC-TCTACTTCATTGAATTGGTCTACTTCT
1 GGAAGATGGGGGTTTGAAGTTTTCACTCACATTGAGCTTC-ACTTCATTGAATTGGTCTACTTCT
* * * * *
95945 CTATATCTCATCAGGAAGAAAACCACTTCATTGTTTTGATTCACTGCTCTGTATCTTATCAGGAA
65 CTGTATCTCATCAGGAAGATAACCACTTCATTGTTTTGATCCACTTCTCTGTATCTCATCAGGAA
* * ** *
96010 GACGGATTTGGTTCACTTCTCTGTGTCTCATTAAGAAGATGACCACTTTATTGCTTCGACCCACT
130 GATGAATTTGGTTCACTTCTCTGCATCTCATCAAGAAGATGACCACTTTATTGCTTCGACCCACT
*
96075 TCTCCGTATCTCATCA
195 TCTCTGTATCTCATCA
** * * *
96091 AAAAGATGGGGGTTT-AAG-TTTCACTCACATTGAGCTTCGCTTCATTGAATTGGTCTACTACTT
1 GGAAGATGGGGGTTTGAAGTTTTCACTCACATTGAGCTTCACTTCATTGAATTGGTCTACTTCTC
* * * ** * *
96154 TGTATTTCATCAGGAAGTTGACTGCTTCATTGTTTTGATCCACTTCTTTGTATCTCATCAAGAAG
66 TGTATCTCATCAGGAAGATAACCACTTCATTGTTTTGATCCACTTCTCTGTATCTCATCAGGAAG
* *
96219 ATGGATTTGGTTCACTTCTCTGCATCTCATCAAGAAGATGACCACTTTATTGCTTCAACCCACTT
131 ATGAATTTGGTTCACTTCTCTGCATCTCATCAAGAAGATGACCACTTTATTGCTTCGACCCACTT
96284 CTCTGTATCTCATCA
196 CTCTGTATCTCATCA
* *
96299 GGAAGATGGGGGTTTGAAGTTTTCACTCACATTGAGCTCCGCTTCATTGAATTGGTCTACTTCTC
1 GGAAGATGGGGGTTTGAAGTTTTCACTCACATTGAGCTTCACTTCATTGAATTGGTCTACTTCTC
** * *
96364 TGTATCTCATCAGGAAGATAACTGCTTCATTGTTTTGATCCACTTCTCTATATCTCATTAGGAAG
66 TGTATCTCATCAGGAAGATAACCACTTCATTGTTTTGATCCACTTCTCTGTATCTCATCAGGAAG
* * * *
96429 --GCAGATTTGGTTCACTTCTCTACATCTCGTCAGGAAGATGACCACTTTATTGCTTCGACCCAG
131 ATG-A-ATTTGGTTCACTTCTCTGCATCTCATCAAGAAGATGACCACTTTATTGCTTCGACCCAC
*
96492 TTCTCTGTATCTCATTA
194 TTCTCTGTATCTCATCA
96509 GGAAGATGGGGGTT
1 GGAAGATGGGGGTT
96523 CTTTGTGTTT
Statistics
Matches: 568, Mismatches: 67, Indels: 13
0.88 0.10 0.02
Matches are distributed among these distances:
208 180 0.32
209 31 0.05
210 357 0.63
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (210 bp):
GGAAGATGGGGGTTTGAAGTTTTCACTCACATTGAGCTTCACTTCATTGAATTGGTCTACTTCTC
TGTATCTCATCAGGAAGATAACCACTTCATTGTTTTGATCCACTTCTCTGTATCTCATCAGGAAG
ATGAATTTGGTTCACTTCTCTGCATCTCATCAAGAAGATGACCACTTTATTGCTTCGACCCACTT
CTCTGTATCTCATCA
Found at i:96472 original size:418 final size:419
Alignment explanation
Indices: 95674--96522 Score: 1270
Period size: 418 Copynumber: 2.0 Consensus size: 419
95664 ACATTTTGGG
** * * *
95674 AAGATGGGAATTTGAAGTTTTACTCACATGGAGCTTCACTTGATTGAATTGGTCTACTTCTTTGT
1 AAGATGGGGGTTTGAAGTTTCACTCACATGGAGCTTCACTTCATTGAATTGGTCTACTACTTTGT
*
95739 ATCTCATCAGGAAGATGATCACTTCATTATTTTGATCCACTTCTCTGTATCTCATCAGGAAGATG
66 ATCTCATCAGGAAGATGATCACTTCATTATTTTGATCCACTTCTCTGTATCTCATCAAGAAGATG
* * * * **
95804 AATTTGGTTCACTTCTTTGCATCTCGTCAGGAAGATGACCACTTTATTACTTCGATTCACTTCTC
131 AATTTGGTTCACTTCTCTGCATCTCATCAAGAAGATGACCACTTTATTACTTCAACCCACTTCTC
*
95869 TGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTTCACTCACATTGAGCTCTACTTCATTGAATT
196 TGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTTCACTCACATTGAGCTCCACTTCATTGAATT
* *
95934 GGTCTACTTCTCTATATCTCATCAGGAAGAAAACCACTTCATTGTTTTGATTCACTGCTCTGTAT
261 GGTCTACTTCTCTATATCTCATCAGGAAGAAAACCACTTCATTGTTTTGATCCACTGCTCTATAT
* * *** *
95999 CTTATCAGGAAGACGGATTTGGTTCACTTCTCTGTGTCTCATTAAGAAGATGACCACTTTATTGC
326 CTCATCAGGAAGACAGATTTGGTTCACTTCTCTACATCTCATCAAGAAGATGACCACTTTATTGC
96064 TTCGACCCACTTCTCCGTATCTCATCAAA
391 TTCGACCCACTTCTCCGTATCTCATCAAA
* *
96093 AAGATGGGGGTTT-AAGTTTCACTCACATTGAGCTTCGCTTCATTGAATTGGTCTACTACTTTGT
1 AAGATGGGGGTTTGAAGTTTCACTCACATGGAGCTTCACTTCATTGAATTGGTCTACTACTTTGT
* * * * *
96157 ATTTCATCAGGAAGTTGA-CTGCTTCATTGTTTTGATCCACTTCTTTGTATCTCATCAAGAAGAT
66 ATCTCATCAGGAAGATGATC-ACTTCATTATTTTGATCCACTTCTCTGTATCTCATCAAGAAGAT
* *
96221 GGATTTGGTTCACTTCTCTGCATCTCATCAAGAAGATGACCACTTTATTGCTTCAACCCACTTCT
130 GAATTTGGTTCACTTCTCTGCATCTCATCAAGAAGATGACCACTTTATTACTTCAACCCACTTCT
*
96286 CTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTTCACTCACATTGAGCTCCGCTTCATTGAAT
195 CTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTTCACTCACATTGAGCTCCACTTCATTGAAT
* * ** *
96351 TGGTCTACTTCTCTGTATCTCATCAGGAAGATAACTGCTTCATTGTTTTGATCCACTTCTCTATA
260 TGGTCTACTTCTCTATATCTCATCAGGAAGAAAACCACTTCATTGTTTTGATCCACTGCTCTATA
* * * *
96416 TCTCATTAGGAAGGCAGATTTGGTTCACTTCTCTACATCTCGTCAGGAAGATGACCACTTTATTG
325 TCTCATCAGGAAGACAGATTTGGTTCACTTCTCTACATCTCATCAAGAAGATGACCACTTTATTG
* * * **
96481 CTTCGACCCAGTTCTCTGTATCTCATTAGG
390 CTTCGACCCACTTCTCCGTATCTCATCAAA
96511 AAGATGGGGGTT
1 AAGATGGGGGTT
96523 CTTTGTGTTT
Statistics
Matches: 384, Mismatches: 45, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
417 1 0.00
418 372 0.97
419 11 0.03
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (419 bp):
AAGATGGGGGTTTGAAGTTTCACTCACATGGAGCTTCACTTCATTGAATTGGTCTACTACTTTGT
ATCTCATCAGGAAGATGATCACTTCATTATTTTGATCCACTTCTCTGTATCTCATCAAGAAGATG
AATTTGGTTCACTTCTCTGCATCTCATCAAGAAGATGACCACTTTATTACTTCAACCCACTTCTC
TGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTTCACTCACATTGAGCTCCACTTCATTGAATT
GGTCTACTTCTCTATATCTCATCAGGAAGAAAACCACTTCATTGTTTTGATCCACTGCTCTATAT
CTCATCAGGAAGACAGATTTGGTTCACTTCTCTACATCTCATCAAGAAGATGACCACTTTATTGC
TTCGACCCACTTCTCCGTATCTCATCAAA
Found at i:96496 original size:85 final size:85
Alignment explanation
Indices: 96357--96513 Score: 206
Period size: 85 Copynumber: 1.8 Consensus size: 85
96347 GAATTGGTCT
** ** * * *
96357 ACTTCTCTGTATCTCATCAGGAAGATAACTGCTTCATTGTTTTGATCCACTTCTCTATATCTCAT
1 ACTTCTCTACATCTCATCAGGAAGATAACCACTTCATTGCTTCGACCCACTTCTCTATATCTCAT
96422 TAGGAAGGCAGATTTGGTTC
66 TAGGAAGGCAGATTTGGTTC
* * * * *
96442 ACTTCTCTACATCTCGTCAGGAAGATGACCACTTTATTGCTTCGACCCAGTTCTCTGTATCTCAT
1 ACTTCTCTACATCTCATCAGGAAGATAACCACTTCATTGCTTCGACCCACTTCTCTATATCTCAT
96507 TAGGAAG
66 TAGGAAG
96514 ATGGGGGTTC
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
85 60 1.00
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.36
Consensus pattern (85 bp):
ACTTCTCTACATCTCATCAGGAAGATAACCACTTCATTGCTTCGACCCACTTCTCTATATCTCAT
TAGGAAGGCAGATTTGGTTC
Found at i:97497 original size:68 final size:67
Alignment explanation
Indices: 97387--97596 Score: 242
Period size: 68 Copynumber: 3.1 Consensus size: 67
97377 CATCTCGACG
* * * *
97387 GACTTCATATGTTGTCATAGCTAAGCTATGGTCTTACACAATATGGTCTCATGTTTATTGGT-CT
1 GACTTCATATGTTGTCATAGCCAA-CTATGGTCTTACACAATATGATCCCATGTTTACT-GTCCT
97451 AGCA
64 AGCA
* * *
97455 GACTTCATATGTTGTCATAGCCCAACTATGGTTTTACGCAATATGATCCCATGTTTACTGTCCTC
1 GACTTCATATGTTGTCATAG-CCAACTATGGTCTTACACAATATGATCCCATGTTTACTGTCCTA
*
97520 GCG
65 GCA
* * * * * *
97523 GACTTCATATGTTGCCATAGTTCAGCTATGGTCTTACACAATATAATTCCATGTTTACTGTCCTG
1 GACTTCATATGTTGTCATAG-CCAACTATGGTCTTACACAATATGATCCCATGTTTACTGTCCTA
*
97588 GCG
65 GCA
97591 GACTTC
1 GACTTC
97597 CGATTCTGAG
Statistics
Matches: 123, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
67 2 0.02
68 118 0.96
69 3 0.02
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (67 bp):
GACTTCATATGTTGTCATAGCCAACTATGGTCTTACACAATATGATCCCATGTTTACTGTCCTAG
CA
Found at i:100159 original size:123 final size:123
Alignment explanation
Indices: 99986--100231 Score: 483
Period size: 123 Copynumber: 2.0 Consensus size: 123
99976 CAAGTAGATT
99986 AGTGGAAATCTATGGCTTACAACAAGACTATCCACTAACTTAAGAATGATGATGGGTTAATAGCA
1 AGTGGAAATCTATGGCTTACAACAAGACTATCCACTAACTTAAGAATGATGATGGGTTAATAGCA
100051 TTTAAGGGTTTGATTAATAACTCATATAATCCCTTTAACTTGCTACTTTTACAACTAA
66 TTTAAGGGTTTGATTAATAACTCATATAATCCCTTTAACTTGCTACTTTTACAACTAA
100109 AGTGGAAATCTATGGCTTACAACAAGACTATCCACTAACTTAAGAATGATGATGGGTTAATAGCA
1 AGTGGAAATCTATGGCTTACAACAAGACTATCCACTAACTTAAGAATGATGATGGGTTAATAGCA
*
100174 TTTAAGGGTTTGATTAATAACTCATATAATCCCTTTAACTTGTTACTTTTACAACTAA
66 TTTAAGGGTTTGATTAATAACTCATATAATCCCTTTAACTTGCTACTTTTACAACTAA
100232 GTCCTTATGT
Statistics
Matches: 122, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
123 122 1.00
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.34
Consensus pattern (123 bp):
AGTGGAAATCTATGGCTTACAACAAGACTATCCACTAACTTAAGAATGATGATGGGTTAATAGCA
TTTAAGGGTTTGATTAATAACTCATATAATCCCTTTAACTTGCTACTTTTACAACTAA
Found at i:105002 original size:18 final size:16
Alignment explanation
Indices: 104970--105013 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 16
104960 ATGAAATGAG
104970 AATAAATTTTTAATTA
1 AATAAATTTTTAATTA
104986 AATAAA--TTTAATTA
1 AATAAATTTTTAATTA
*
105000 ATTAAAATTTTTAA
1 AAT-AAATTTTTAA
105014 ACCTTAACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
14 10 0.42
15 3 0.12
16 6 0.25
17 5 0.21
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
AATAAATTTTTAATTA
Found at i:111067 original size:33 final size:32
Alignment explanation
Indices: 111019--111102 Score: 91
Period size: 32 Copynumber: 2.5 Consensus size: 32
111009 AATTAAATTA
*
111019 AAATTACAAGTTTAATTTAATTTATTCTTATTTTT
1 AAATTA-AATTTTAATTTAATTTA-T-TTATTTTT
*
111054 CAAATT-AA-TTTAATTTTTATTTATTTATTTTT
1 -AAATTAAATTTTAA-TTTAATTTATTTATTTTT
111086 AAATTAAATTTTAATTT
1 AAATTAAATTTTAATTT
111103 TTAAATTAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
31 5 0.11
32 13 0.30
33 11 0.25
34 10 0.23
36 5 0.11
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.60
Consensus pattern (32 bp):
AAATTAAATTTTAATTTAATTTATTTATTTTT
Found at i:111104 original size:33 final size:35
Alignment explanation
Indices: 111019--111105 Score: 103
Period size: 33 Copynumber: 2.5 Consensus size: 35
111009 AATTAAATTA
*
111019 AAATTACAAGTTTAA-TTTAATTTATTCTTATTTTTC
1 AAATTA-AA-TTTAATTTTTATTTATTCTTATTTTTC
111055 AAATT-AATTTAATTTTTATTTA-T-TTATTTTT-
1 AAATTAAATTTAATTTTTATTTATTCTTATTTTTC
111086 AAATTAAATTTTAATTTTTA
1 AAATTAAA-TTTAATTTTTA
111106 AATTAAATAT
Statistics
Matches: 47, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
31 5 0.11
32 10 0.21
33 17 0.36
34 10 0.21
36 5 0.11
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (35 bp):
AAATTAAATTTAATTTTTATTTATTCTTATTTTTC
Found at i:111138 original size:34 final size:34
Alignment explanation
Indices: 111095--111169 Score: 109
Period size: 33 Copynumber: 2.3 Consensus size: 34
111085 TAAATTAAAT
*
111095 TTTAATTTTTAAATTAA-ATATTTTACAACCATA
1 TTTAATTTTTTAATTAATATATTTTACAACCATA
* *
111128 TTTAATTTTTTATTTAATTTATTTTACAACCATA
1 TTTAATTTTTTAATTAATATATTTTACAACCATA
111162 TTT-ATTTT
1 TTTAATTTT
111170 ATCCCATCAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
33 20 0.53
34 18 0.47
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (34 bp):
TTTAATTTTTTAATTAATATATTTTACAACCATA
Found at i:111164 original size:17 final size:17
Alignment explanation
Indices: 111113--111170 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
111103 TTAAATTAAA
111113 TATTTTACAACCATATT
1 TATTTTACAACCATATT
** ***
111130 TAATTTTTTATTTA-ATT
1 T-ATTTTACAACCATATT
111147 TATTTTACAACCATATT
1 TATTTTACAACCATATT
111164 TATTTTA
1 TATTTTA
111171 TCCCATCAAT
Statistics
Matches: 29, Mismatches: 10, Indels: 4
0.67 0.23 0.09
Matches are distributed among these distances:
16 7 0.24
17 15 0.52
18 7 0.24
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (17 bp):
TATTTTACAACCATATT
Found at i:116079 original size:17 final size:17
Alignment explanation
Indices: 116057--116101 Score: 90
Period size: 17 Copynumber: 2.6 Consensus size: 17
116047 AAAAGAGTTG
116057 AAGAAGAAGAGTAGAGA
1 AAGAAGAAGAGTAGAGA
116074 AAGAAGAAGAGTAGAGA
1 AAGAAGAAGAGTAGAGA
116091 AAGAAGAAGAG
1 AAGAAGAAGAG
116102 AAATTTGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.60, C:0.00, G:0.36, T:0.04
Consensus pattern (17 bp):
AAGAAGAAGAGTAGAGA
Found at i:119069 original size:24 final size:24
Alignment explanation
Indices: 119006--119054 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
118996 ACAAAAAATA
*
119006 AACTTATAATAAATATATAATACT
1 AACTTATCATAAATATATAATACT
119030 AACTTATCATAAATATATAATACT
1 AACTTATCATAAATATATAATACT
119054 A
1 A
119055 CTCTAATGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (24 bp):
AACTTATCATAAATATATAATACT
Found at i:126367 original size:29 final size:30
Alignment explanation
Indices: 126295--126375 Score: 110
Period size: 30 Copynumber: 2.7 Consensus size: 30
126285 AAGATCCCCA
* * **
126295 ACATTTTCAAGTGATTGTAGAACACCCTTT
1 ACATTTTCAAGTGGTTGTAGGACACCCTCC
126325 ACATTTTCAAGTGGTTGTAGGACACCC-CC
1 ACATTTTCAAGTGGTTGTAGGACACCCTCC
*
126354 ATATTTTCAAGTGGTTGTAGGA
1 ACATTTTCAAGTGGTTGTAGGA
126376 TGGTTTTCTA
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
29 21 0.46
30 25 0.54
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.35
Consensus pattern (30 bp):
ACATTTTCAAGTGGTTGTAGGACACCCTCC
Found at i:128868 original size:82 final size:81
Alignment explanation
Indices: 128546--128997 Score: 388
Period size: 81 Copynumber: 5.5 Consensus size: 81
128536 ATTAGGATAT
* * * * * * *
128546 AATCTGTTAATCGACGGGAATAAATCTTGAAACATATTTAGTCATCTTATT-T--TATTTGAAAA
1 AATCTGTTAAACGGCGGGAATAAATCCTGAAACAAATTTATTTA-CTTATTCTCGT-TTTGGAAA
*
128608 CAAAATCAAACT-GAAATAA
64 TAAAATCAAA-TAG-AATAA
* * *
128627 AATCTGTTAAACGACGGGAATAAATCC-CAAACAAATTTATTTACTTAATTCT--TATTTGGAAC
1 AATCTGTTAAACGGCGGGAATAAATCCTGAAACAAATTTATTTACTT-ATTCTCGT-TTTGGAAA
* *
128689 CAAAATTCAAATATAGAATTA
64 TAAAA-TC-AA-ATAGAATAA
* * * * * *
128710 AATCTATTGAATGGAGGGAATAAAT-CTCGAAACAAATTTATTTACTTAATCTCGTTTTTAGAAA
1 AATCTGTTAAACGGCGGGAATAAATCCT-GAAACAAATTTATTTACTTATTCTCG-TTTTGGAAA
128774 TAAAATCAAATAGAATAA
64 TAAAATCAAATAGAATAA
* * *
128792 AATCTGTTAAACGGTGGGAGATAAATCCTGAAACAGATTTATTTTCTTATTCTCGTTTTGGAAAT
1 AATCTGTTAAACGGCGGGA-ATAAATCCTGAAACAAATTTATTTACTTATTCTCGTTTTGGAAAT
128857 AAAATCAAATAGAAT-A
65 AAAATCAAATAGAATAA
* ** * * * *
128873 AATCTATTAAACAACAGGAAATAAAT-ATCAAAACAGATTTATTTACTTATTCTCGTTTTGGAAA
1 AATCTGTTAAACGGC-GGGAATAAATCCT-GAAACAAATTTATTTACTTATTCTCGTTTTGGAAA
*
128937 TAAAATCAAATACAATAA
64 TAAAATCAAATAGAATAA
* *
128955 AATCTGTTAAATGGTGGGAAATAAATTCC-GAAACAAA-TTATTT
1 AATCTGTTAAACGGCGGG-AATAAA-TCCTGAAACAAATTTATTT
128998 TCCAAATTTA
Statistics
Matches: 306, Mismatches: 46, Indels: 38
0.78 0.12 0.10
Matches are distributed among these distances:
79 3 0.01
80 16 0.05
81 113 0.37
82 76 0.25
83 63 0.21
84 24 0.08
85 10 0.03
86 1 0.00
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.33
Consensus pattern (81 bp):
AATCTGTTAAACGGCGGGAATAAATCCTGAAACAAATTTATTTACTTATTCTCGTTTTGGAAATA
AAATCAAATAGAATAA
Found at i:128959 original size:163 final size:163
Alignment explanation
Indices: 128600--128999 Score: 454
Period size: 163 Copynumber: 2.4 Consensus size: 163
128590 TCTTATTTTA
* * ** *
128600 TTTGAAAACAAAATCAAACTGAAATAAAATCTGTTAAACGACGGGAATAAATCCCAAACAAATTT
1 TTTGGAAATAAAATCAAA-T-AAATAAAATCTGTTAAACGGTGGGAATAAATCCGAAAC-AATTT
* * * *** *
128665 ATTTACTTAATTCTTATTTGGAACCAAAATTCAAATATAGAATTAAATCTATTGAATGGAGGGAA
63 ATTTTCTTAATTCTTATTTGGAAACAAAATTCAAATATAGAATTAAATCTATTAAAAACAGGAAA
* *
128730 TAAATCTCGAAACAAATTTATTTACTTAATCTCGTT
128 TAAATATCAAAACAAATTTATTTACTTAATCTCGTT
*
128766 TTTAGAAATAAAATCAAATAGAATAAAATCTGTTAAACGGTGGGAGATAAATCCTGAAACAGATT
1 TTTGGAAATAAAATCAAATA-AATAAAATCTGTTAAACGGTGGGA-ATAAATCC-GAAACA-ATT
*
128831 TATTTTCTT-ATTCTCGT-TTTGGAAATAAAA-TC-AA-ATAGAA-TAAATCTATTAAACAACAG
62 TATTTTCTTAATTCT--TATTTGGAAACAAAATTCAAATATAGAATTAAATCTATTAAA-AACAG
* *
128890 GAAATAAATATCAAAACAGATTTATTTACTTATTCTCG-T
124 GAAATAAATATCAAAACAAATTTATTTACTTAATCTCGTT
* *
128929 TTTGGAAATAAAATCAAATACAATAAAATCTGTTAAATGGTGGGAAATAAATTCCGAAACAAATT
1 TTTGGAAATAAAATCAAATA-AATAAAATCTGTTAAACGGTGGG-AATAAA-TCCGAAACAATTT
128994 ATTTTC
63 ATTTTC
129000 CAAATTTAAT
Statistics
Matches: 203, Mismatches: 22, Indels: 22
0.82 0.09 0.09
Matches are distributed among these distances:
162 9 0.04
163 65 0.32
164 46 0.23
165 25 0.12
166 31 0.15
167 26 0.13
168 1 0.00
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.32
Consensus pattern (163 bp):
TTTGGAAATAAAATCAAATAAATAAAATCTGTTAAACGGTGGGAATAAATCCGAAACAATTTATT
TTCTTAATTCTTATTTGGAAACAAAATTCAAATATAGAATTAAATCTATTAAAAACAGGAAATAA
ATATCAAAACAAATTTATTTACTTAATCTCGTT
Found at i:136639 original size:7 final size:7
Alignment explanation
Indices: 136627--136682 Score: 60
Period size: 7 Copynumber: 8.1 Consensus size: 7
136617 TTTTGTTAAA
136627 GTCAACG
1 GTCAACG
136634 GTCAACG
1 GTCAACG
* *
136641 ATCAATG
1 GTCAACG
*
136648 GTCAA-A
1 GTCAACG
*
136654 GTCAACT
1 GTCAACG
136661 GTCAACG
1 GTCAACG
*
136668 GTCAACA
1 GTCAACG
136675 GTCAACG
1 GTCAACG
136682 G
1 G
136683 CCGATCAACG
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
6 5 0.12
7 35 0.88
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.18
Consensus pattern (7 bp):
GTCAACG
Found at i:136678 original size:27 final size:27
Alignment explanation
Indices: 136624--136679 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
136614 GTTTTTTGTT
**
136624 AAAGTCAACGGTCAACGATCAATGGTC
1 AAAGTCAACGGTCAACGATCAACAGTC
* *
136651 AAAGTCAACTGTCAACGGTCAACAGTC
1 AAAGTCAACGGTCAACGATCAACAGTC
136678 AA
1 AA
136680 CGGCCGATCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.39, C:0.23, G:0.20, T:0.18
Consensus pattern (27 bp):
AAAGTCAACGGTCAACGATCAACAGTC
Found at i:136784 original size:30 final size:27
Alignment explanation
Indices: 136750--136807 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
136740 TGGTTCAATT
136750 GGGTTT-GGTTTGG--TTTTTTTTAAA
1 GGGTTTGGGTTTGGTCTTTTTTTTAAA
136774 GGGTTTGGGTTTGGTCTTTTTTTTAAA
1 GGGTTTGGGTTTGGTCTTTTTTTTAAA
136801 GGGTTTG
1 GGGTTTG
136808 TAAGGTAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
24 6 0.19
25 7 0.23
27 18 0.58
ACGTcount: A:0.10, C:0.02, G:0.33, T:0.55
Consensus pattern (27 bp):
GGGTTTGGGTTTGGTCTTTTTTTTAAA
Found at i:140534 original size:3 final size:3
Alignment explanation
Indices: 140519--140581 Score: 99
Period size: 3 Copynumber: 20.7 Consensus size: 3
140509 AAATTCCAAG
*
140519 ATA ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
140567 AAA ATA ATAA ATA AT
1 ATA ATA AT-A ATA AT
140582 TAAAGAGAAT
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
3 52 0.95
4 3 0.05
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:141645 original size:13 final size:13
Alignment explanation
Indices: 141627--141663 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
141617 TTCGAAAAAC
*
141627 TCAACGGTCAAGG
1 TCAACGGTCAAAG
141640 TCAACGGTCAAAG
1 TCAACGGTCAAAG
141653 TCAACGGTCAA
1 TCAACGGTCAA
141664 CGACAGATCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.16
Consensus pattern (13 bp):
TCAACGGTCAAAG
Found at i:141648 original size:7 final size:7
Alignment explanation
Indices: 141627--141665 Score: 55
Period size: 7 Copynumber: 5.9 Consensus size: 7
141617 TTCGAAAAAC
141627 TCAACGG
1 TCAACGG
141634 TCAA-GG
1 TCAACGG
141640 TCAACGG
1 TCAACGG
*
141647 TCAA-AG
1 TCAACGG
141653 TCAACGG
1 TCAACGG
141660 TCAACG
1 TCAACG
141666 ACAGATCAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 11 0.39
7 17 0.61
ACGTcount: A:0.33, C:0.26, G:0.26, T:0.15
Consensus pattern (7 bp):
TCAACGG
Found at i:141685 original size:22 final size:22
Alignment explanation
Indices: 141658--141707 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
141648 CAAAGTCAAC
*
141658 GGTCAACGAC-AGATCAACGGTT
1 GGTCAACGACTA-ATCAACGGCT
* *
141680 GGTCAATGACTAATGAACGGCT
1 GGTCAACGACTAATCAACGGCT
141702 GGTCAA
1 GGTCAA
141708 TGATCGGTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 23 0.96
23 1 0.04
ACGTcount: A:0.32, C:0.20, G:0.28, T:0.20
Consensus pattern (22 bp):
GGTCAACGACTAATCAACGGCT
Found at i:141807 original size:27 final size:28
Alignment explanation
Indices: 141754--141812 Score: 93
Period size: 27 Copynumber: 2.1 Consensus size: 28
141744 CTTGGTTCAA
*
141754 TTGGGTTTGGTTTGGTTTTTTTAAAGGGT
1 TTGGGTTTGGTCT-GTTTTTTTAAAGGGT
141783 TTGGGTTTGGTCT-TTTTTTTAAAGGGT
1 TTGGGTTTGGTCTGTTTTTTTAAAGGGT
141810 TTG
1 TTG
141813 TAAGGTAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 17 0.59
29 12 0.41
ACGTcount: A:0.10, C:0.02, G:0.32, T:0.56
Consensus pattern (28 bp):
TTGGGTTTGGTCTGTTTTTTTAAAGGGT
Found at i:152170 original size:308 final size:308
Alignment explanation
Indices: 151593--152206 Score: 899
Period size: 308 Copynumber: 2.0 Consensus size: 308
151583 TGCCCGAGAC
* * * *
151593 ATGGGTAAATGATATCCTCTAATTGGCATTACATGGTTAATGGAAAGTAAACATGGCCACAGGTC
1 ATGGGTAAATGATATCCTCTAATTGGAAGTACATGGTTAATGAAAAGTAAACATGGCCACAAGTC
* * * *
151658 ATTTGTCTTTGTGATGGATGACTTGATCGCTATTTGATAATGATTGAATTTTCATGAAGGAATAT
66 ATTCGTCTTTGTGATGGATGACTTGATCACTATTTGATAATGATTGAATTTTCATGAAAGAAGAT
* * * *
151723 GTAATGGTTATCATGAGATAAAATAGAACCATATTGGGAGAATGAATATTATCCCAAAGAGATTA
131 ATAATGATTACCATGAGATAAAATAGAACCATATTGGGAGAACGAATATTATCCCAAAGAGATTA
* *
151788 AAGATATCCTATGAGAGTAACACACTTATGACAAAATCATTGGATGAACACTAATCAAGTTGCTT
196 AAGATATCCTATGAGAGTAACACACTTATGACAAAATCATTGGATCAACACTAATCAAGTTGATT
151853 TCATAATGGTATACCGTTGGAGAGAGCTTAGTCACGATACTATAGTGG
261 TCATAATGGTATACCGTTGGAGAGAGCTTAGTCACGATACTATAGTGG
* * * * *
151901 ATGGGTAAATGATATTCTCTCATTGGAAGTACATGGTTGATGAAAAGTAAACGTGGCCACAAGTT
1 ATGGGTAAATGATATCCTCTAATTGGAAGTACATGGTTAATGAAAAGTAAACATGGCCACAAGTC
* * *
151966 GTTCGTCTTTGTGATGGATGACTTGATCACTATTTGATAGTGATTGACTTTTCATGAAAGAAGAT
66 ATTCGTCTTTGTGATGGATGACTTGATCACTATTTGATAATGATTGAATTTTCATGAAAGAAGAT
*** *
152031 ATAATGATTACCATGAGATAAAATAGGGTCATATTGGGAGAACGAATATTATCTCAAAGAGATTA
131 ATAATGATTACCATGAGATAAAATAGAACCATATTGGGAGAACGAATATTATCCCAAAGAGATTA
* * * **
152096 AGGATATCCTATGAGGGTAACACACTTATGA-AAAGGTCATTGGA-CAAGCACTAATTGAGTTGA
196 AAGATATCCTATGAGAGTAACACACTTATGACAAA-ATCATTGGATCAA-CACTAATCAAGTTGA
* *
152159 TTTCGTAATGGTATACCGTTGGGGAGAGCTTAGTCACGATACTATAGT
259 TTTCATAATGGTATACCGTTGGAGAGAGCTTAGTCACGATACTATAGT
152207 AGAATGATTT
Statistics
Matches: 271, Mismatches: 33, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
307 5 0.02
308 266 0.98
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.31
Consensus pattern (308 bp):
ATGGGTAAATGATATCCTCTAATTGGAAGTACATGGTTAATGAAAAGTAAACATGGCCACAAGTC
ATTCGTCTTTGTGATGGATGACTTGATCACTATTTGATAATGATTGAATTTTCATGAAAGAAGAT
ATAATGATTACCATGAGATAAAATAGAACCATATTGGGAGAACGAATATTATCCCAAAGAGATTA
AAGATATCCTATGAGAGTAACACACTTATGACAAAATCATTGGATCAACACTAATCAAGTTGATT
TCATAATGGTATACCGTTGGAGAGAGCTTAGTCACGATACTATAGTGG
Found at i:152575 original size:26 final size:26
Alignment explanation
Indices: 152526--152575 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
152516 ATTTATGTTT
* ***
152526 TTCAAATTAAATGAAGTTTGAAAACG
1 TTCAAATTAAATGAAATCCAAAAACG
152552 TTCAAATTAAATGAAATCCAAAAA
1 TTCAAATTAAATGAAATCCAAAAA
152576 TGGAAATAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.52, C:0.10, G:0.10, T:0.28
Consensus pattern (26 bp):
TTCAAATTAAATGAAATCCAAAAACG
Found at i:158670 original size:17 final size:17
Alignment explanation
Indices: 158648--158683 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
158638 TATATTTTAA
*
158648 AAAATATTAATTACTAT
1 AAAATATTAATTAATAT
*
158665 AAAATATTTATTAATAT
1 AAAATATTAATTAATAT
158682 AA
1 AA
158684 TAAAAAGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.42
Consensus pattern (17 bp):
AAAATATTAATTAATAT
Found at i:159341 original size:16 final size:16
Alignment explanation
Indices: 159320--159350 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
159310 AGTAAAACTA
159320 ATATAAAATTTATAAT
1 ATATAAAATTTATAAT
*
159336 ATATAACATTTATAA
1 ATATAAAATTTATAA
159351 ATAAAGTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
ATATAAAATTTATAAT
Found at i:159464 original size:25 final size:23
Alignment explanation
Indices: 159435--159482 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
159425 TATAAATAAA
159435 TTATGATAAAAGCTATAATATTTTT
1 TTATGA-AAAAG-TATAATATTTTT
* *
159460 TTATGAATAAGTATATTATTTTT
1 TTATGAAAAAGTATAATATTTTT
159483 ATAATATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 11 0.52
24 4 0.19
25 6 0.29
ACGTcount: A:0.38, C:0.02, G:0.08, T:0.52
Consensus pattern (23 bp):
TTATGAAAAAGTATAATATTTTT
Found at i:164254 original size:36 final size:36
Alignment explanation
Indices: 164214--164352 Score: 179
Period size: 36 Copynumber: 3.9 Consensus size: 36
164204 AGCTTTGGAA
* * * *
164214 TGCTTATGTCTTAGTTACAGTGTAAGGCTATGTGAT
1 TGCTTACGTCTCAGTTAGAGCGTAAGGCTATGTGAT
164250 TGCTTACGTCTCAGTTAGAGCGTAAGGCTATGTGAT
1 TGCTTACGTCTCAGTTAGAGCGTAAGGCTATGTGAT
* *
164286 TGTTTACGTCTCAATTAGAGCGTAAGGCTATGTGAT
1 TGCTTACGTCTCAGTTAGAGCGTAAGGCTATGTGAT
* * * * *
164322 TGCTTATGTCTCGGTTAAAGCATAATGCTAT
1 TGCTTACGTCTCAGTTAGAGCGTAAGGCTAT
164353 TTCAGCTCAG
Statistics
Matches: 90, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 90 1.00
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.37
Consensus pattern (36 bp):
TGCTTACGTCTCAGTTAGAGCGTAAGGCTATGTGAT
Found at i:175190 original size:179 final size:179
Alignment explanation
Indices: 174633--176282 Score: 2677
Period size: 179 Copynumber: 9.2 Consensus size: 179
174623 TACCAACATC
*
174633 CCCTATTGAAGCTAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTTTCTCAAGTAAA
1 CCCTATTGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTTTCTCAAGTAAA
*
174698 CTCAAAATCCAAAAAATGATACTCCTAACTGACACTAAGGAATTCCATAATCTTGTCATGATTTC
66 CTCAAAATCCAAAAAA-GATACTCCTAACTGACACTAATGAATTCCATAATCTTGTCATGATTTC
*
174763 CATTCAAAGAAGCCTAGCAATGATAAAACGAGATGCCAATCTACATGCGA
130 CATTCAAAGAAGCCTAGCAATGATAACACGAGATGCCAATCTACATGCGA
174813 CCCTATTGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTTTCTCAAGTAAA
1 CCCTATTGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTTTCTCAAGTAAA
* * *
174878 CTCAAAATCCAAAAAAAGATACTCCTATCTAACACTAATGAATCCCATAATCTTGTCATGATTTC
66 CTCAAAATCC-AAAAAAGATACTCCTAACTGACACTAATGAATTCCATAATCTTGTCATGATTTC
*
174943 CATTCAAAGAAGCCTAGCAATGATAAAACGAGATGCCAATCTACATGCGA
130 CATTCAAAGAAGCCTAGCAATGATAACACGAGATGCCAATCTACATGCGA
*
174993 CCCTATTGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTTTCTCACGTAAA
1 CCCTATTGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTTTCTCAAGTAAA
* * *
175058 CTCGAAATCCGAAAAAGATACTCC-AACTTGACACTAATGAATTCCATAATCTTGTCATGATTTA
66 CTCAAAATCCAAAAAAGATACTCCTAAC-TGACACTAATGAATTCCATAATCTTGTCATGATTTC
*
175122 CATTCAAAGAAGCCTAGCAATGATAACACAAGATGCCAATCTACATGCGA
130 CATTCAAAGAAGCCTAGCAATGATAACACGAGATGCCAATCTACATGCGA
* *
175172 CCCTATTGAAGCCAAGAACAATAAAATCTCAAGGAAACTCATTTTCTTGATGTTTCTCACGTAAA
1 CCCTATTGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTTTCTCAAGTAAA
* * *
175237 CTCGAAATCCAAAAAAGATACTCCAAACTGACACTAATGAATTCCATAATCTTGTCATGATTTAC
66 CTCAAAATCCAAAAAAGATACTCCTAACTGACACTAATGAATTCCATAATCTTGTCATGATTTCC
* *
175302 ATTCAAAGAAGCCTAGCAATGATAACACAAGATGCCAATCTACATGTGA
131 ATTCAAAGAAGCCTAGCAATGATAACACGAGATGCCAATCTACATGCGA
* *
175351 CCCTATTGAAGCCAAGAACAATAAAATCTCAAGGAAACTCATTTTCTTGATGTTTCTTAAGTAAA
1 CCCTATTGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTTTCTCAAGTAAA
* * *
175416 CTCAAAATCCGAAAAAAGATACTCCTAGCTAACACTAATGAATTCCATAATCTTGTCATGGTTTC
66 CTCAAAATCC-AAAAAAGATACTCCTAACTGACACTAATGAATTCCATAATCTTGTCATGATTTC
*
175481 CATTCAAAGAAGCCTAGCAATGATAACACGAGATG----TCTACATGCAA
130 CATTCAAAGAAGCCTAGCAATGATAACACGAGATGCCAATCTACATGCGA
* *
175527 CCCTATTGAAGCCAACAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTTTTTCAAGTAAA
1 CCCTATTGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTTTCTCAAGTAAA
* * * *
175592 CTCAAAATCCAAAAAAGATACTCCTAGCT-AGCACTAATGAATTACACAATGTTGTCATGATTTC
66 CTCAAAATCCAAAAAAGATACTCCTAACTGA-CACTAATGAATTCCATAATCTTGTCATGATTTC
* *
175656 CATTCAAAGAAGCCAAGCAATGATAACACGAGATGCCAATCTACATG-AA
130 CATTCAAAGAAGCCTAGCAATGATAACACGAGATGCCAATCTACATGCGA
* *
175705 CCCCTATTGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTTTATCACGTAA
1 -CCCTATTGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTTTCTCAAGTAA
* * * *
175770 ACTCGAATTCCGAAAAAGATACTCCAAACTGACACTAATGAATTCCATAATCTTGTCATGATTTC
65 ACTCAAAATCCAAAAAAGATACTCCTAACTGACACTAATGAATTCCATAATCTTGTCATGATTTC
* * *
175835 CATTCAAAGAAGCCTAGCAATGATAACACGAGATGTCAATCGACATGCAA
130 CATTCAAAGAAGCCTAGCAATGATAACACGAGATGCCAATCTACATGCGA
*
175885 CCCTATTGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTTTCTCAAGAAAA
1 CCCTATTGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTTTCTCAAGTAAA
* * *
175950 CTCAAAATCCAAAAAAGATACTCCTAGCTGAAACTAATGAATTCCACAATCTTGTCATGATTTCC
66 CTCAAAATCCAAAAAAGATACTCCTAACTGACACTAATGAATTCCATAATCTTGTCATGATTTCC
* * *
176015 ATTCAAAGAAGCCTAGCGATGATAACACAAGATGCCAATCTACATGTGA
131 ATTCAAAGAAGCCTAGCAATGATAACACGAGATGCCAATCTACATGCGA
* *
176064 TCCTATTGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGAAGTTTCTCAAGTAAA
1 CCCTATTGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTTTCTCAAGTAAA
* **
176129 CTCAAAATCCGAAAAAGATACTCCTAGTTGACACTAATGAATTCCATAATCTTGTCATGATTTCC
66 CTCAAAATCCAAAAAAGATACTCCTAACTGACACTAATGAATTCCATAATCTTGTCATGATTTCC
* *
176194 ATTCAAAGAAGCCTAGCAATGATAACAAGAGATGCCAACCTACATGCGA
131 ATTCAAAGAAGCCTAGCAATGATAACACGAGATGCCAATCTACATGCGA
*
176243 CCCTATTGAAGCAAAGAA-AATAAAGTCTCAAGGAAACTCA
1 CCCTATTGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCA
176283 AAATCCGAAA
Statistics
Matches: 1377, Mismatches: 81, Indels: 26
0.93 0.05 0.02
Matches are distributed among these distances:
174 1 0.00
175 82 0.06
176 80 0.06
178 26 0.02
179 852 0.62
180 330 0.24
181 6 0.00
ACGTcount: A:0.39, C:0.22, G:0.13, T:0.26
Consensus pattern (179 bp):
CCCTATTGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTTTCTCAAGTAAA
CTCAAAATCCAAAAAAGATACTCCTAACTGACACTAATGAATTCCATAATCTTGTCATGATTTCC
ATTCAAAGAAGCCTAGCAATGATAACACGAGATGCCAATCTACATGCGA
Found at i:176391 original size:151 final size:151
Alignment explanation
Indices: 176118--176434 Score: 539
Period size: 151 Copynumber: 2.1 Consensus size: 151
176108 TCTTGAAGTT
* * * *
176118 TCTCAAGTAAACTCAAAATCCGAAAAAGATACTCCTAGTTGACACTAATGAATTCCATAATCTTG
1 TCTCAAGGAAACTCAAAATCCGAAAAAGATACTCCTAGCTAACACTAAGGAATTCCATAATCTTG
*
176183 TCATGATTTCCATTCAAAGAAGCCTAGCAATGATAACAAGAGATGCCAACCTACATGCGACCCTA
66 TCATGATTTCCATTCAAAGAAGCCTAGCAATGATAACAAGAGATGCCAACCTACATGCAACCCTA
176248 TTGAAGCAAAGAA-AATAAAG
131 TTGAAGCAAAGAACAATAAAG
176268 TCTCAAGGAAACTCAAAATCCGAAAAAAGATACTCCTAGCTAACACTAAGGAATTCCATAATCTT
1 TCTCAAGGAAACTCAAAATCCG-AAAAAGATACTCCTAGCTAACACTAAGGAATTCCATAATCTT
*
176333 GTCATGATTTCCATTCAAAGAAGCCTAGCAATGATAA-AACGAGATGCCAATCTACATGCAACCC
65 GTCATGATTTCCATTCAAAGAAGCCTAGCAATGATAACAA-GAGATGCCAACCTACATGCAACCC
*
176397 TATTGAAGCCAAGAACAATAAAG
129 TATTGAAGCAAAGAACAATAAAG
176420 TCTCAAGGAAACTCA
1 TCTCAAGGAAACTCA
176435 TTTTCTTGAT
Statistics
Matches: 157, Mismatches: 7, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
150 23 0.15
151 112 0.71
152 22 0.14
ACGTcount: A:0.42, C:0.22, G:0.14, T:0.22
Consensus pattern (151 bp):
TCTCAAGGAAACTCAAAATCCGAAAAAGATACTCCTAGCTAACACTAAGGAATTCCATAATCTTG
TCATGATTTCCATTCAAAGAAGCCTAGCAATGATAACAAGAGATGCCAACCTACATGCAACCCTA
TTGAAGCAAAGAACAATAAAG
Found at i:176945 original size:357 final size:358
Alignment explanation
Indices: 176268--177284 Score: 1790
Period size: 357 Copynumber: 2.8 Consensus size: 358
176258 GAAAATAAAG
* * *
176268 TCTCAAGGAAACTCAAAATCCGAAAAAAGATACTCCTAGCTAACACTAAGGAATTCCATAATCTT
1 TCTCAAGTAAACTC-AAATCC-AAAAAAGATACTCCTAGCTAACACTAATGAATTCCACAATCTT
*
176333 GTCATGATTTCCATTCAAAGAAGCCTAGCAATGATAAAACGAGATGCCAATCTACATGCAACCCT
64 GTCATGATTTCCATTCAAAGAAGCCTAGCAATGATAACACGAGATGCCAATCTACATGCAACCCT
176398 ATTGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTTTCTCAAGTAAACTCA
129 ATTGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTTTCTCAAGTAAACTCA
176463 AAATCCGAAAAACGATACTCCTAGCTGACAATAATGAATTCCACAATCTTGTCATGATTTCCATT
194 AAATCCGAAAAACGATACTCCTAGCTGACAATAATGAATTCCACAATCTTGTCATGATTTCCATT
* *
176528 CAAAGAAGCCTAGCAATGATAACACGAGATGCCAATCGACATGCAACCCTATTGAAGCCAAGAAC
259 CAAAGAAGCCTAGCAATGATAACACAAGATGCCAATCGACATGCAACCCTACTGAAGCCAAGAAC
176593 AATAAAGTCTCAAGGAAACTCATTTTCTTGATGTT
324 AATAAAGTCTCAAGGAAACTCATTTTCTTGATGTT
*
176628 TCTCAAGTAAACTC-AATCCAAAAAAGATACTCCTAGCTGACACTAATGAATTCCACAATCTTGT
1 TCTCAAGTAAACTCAAATCCAAAAAAGATACTCCTAGCTAACACTAATGAATTCCACAATCTTGT
*
176692 CATGATTTCCATTCAAAGAAGCCTAGCAATGATAACACGAGATGCCAATCTACAAGCAACCCTAT
66 CATGATTTCCATTCAAAGAAGCCTAGCAATGATAACACGAGATGCCAATCTACATGCAACCCTAT
*
176757 TGAAGCCAAGAACAATAAAGTCTCCAGGAAACTCATTTTCTTGATGTTTCTCAAGTAAACTCAAA
131 TGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTTTCTCAAGTAAACTCAAA
176822 ATCCGAAAAACGATACTCCTAGCTGACAATAATGAATTCCACAATCTTGTCATGATTTCCATTCA
196 ATCCGAAAAACGATACTCCTAGCTGACAATAATGAATTCCACAATCTTGTCATGATTTCCATTCA
*
176887 AAGAAGCCTAGCAATGATAACACAAGATGTCAATCGACATGCAACCCTACTGAAGCCAAGAACAA
261 AAGAAGCCTAGCAATGATAACACAAGATGCCAATCGACATGCAACCCTACTGAAGCCAAGAACAA
*
176952 TAAAGTCTCCAGGAAACTCATTTTCTTGATGTT
326 TAAAGTCTCAAGGAAACTCATTTTCTTGATGTT
176985 TCTCAAGTAAACTCAAAATCCAAAAAAGATACTCCTAGCTAACACTAATGAATTCCACAATCTTG
1 TCTCAAGTAAACTC-AAATCCAAAAAAGATACTCCTAGCTAACACTAATGAATTCCACAATCTTG
* *
177050 TCATGATTTCCATTCAAAGAAGCCTAGCAATGATAACACGAGATGCCAATCTACATGCGATCCTA
65 TCATGATTTCCATTCAAAGAAGCCTAGCAATGATAACACGAGATGCCAATCTACATGCAACCCTA
* *
177115 TTGAAGCCAAGAACAATAAAGTCTGAAGGAAACTCATTTTCTTGATGTTTCTCAATTAAACTCAA
130 TTGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTTTCTCAAGTAAACTCAA
* * * *
177180 AATCTGAAAAA-GATAGTCCTAGCTGACACTAATGAATTCCATAATCTTGTCATGATTTCCATTC
195 AATCCGAAAAACGATACTCCTAGCTGACAATAATGAATTCCACAATCTTGTCATGATTTCCATTC
* *
177244 AAAGAAGCCTAGCAATGAT-A-ACGAGATGCCAATCTACATGC
260 AAAGAAGCCTAGCAATGATAACACAAGATGCCAATCGACATGC
177285 GACTGCGGAA
Statistics
Matches: 630, Mismatches: 25, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
356 18 0.03
357 343 0.54
358 74 0.12
359 182 0.29
360 13 0.02
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.26
Consensus pattern (358 bp):
TCTCAAGTAAACTCAAATCCAAAAAAGATACTCCTAGCTAACACTAATGAATTCCACAATCTTGT
CATGATTTCCATTCAAAGAAGCCTAGCAATGATAACACGAGATGCCAATCTACATGCAACCCTAT
TGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTTTCTCAAGTAAACTCAAA
ATCCGAAAAACGATACTCCTAGCTGACAATAATGAATTCCACAATCTTGTCATGATTTCCATTCA
AAGAAGCCTAGCAATGATAACACAAGATGCCAATCGACATGCAACCCTACTGAAGCCAAGAACAA
TAAAGTCTCAAGGAAACTCATTTTCTTGATGTT
Found at i:177122 original size:179 final size:180
Alignment explanation
Indices: 176268--177284 Score: 1760
Period size: 180 Copynumber: 5.7 Consensus size: 180
176258 GAAAATAAAG
* * * *
176268 TCTCAAGGAAACTCAAAATCCGAAAAAAGATACTCCTAGCTAACACTAAGGAATTCCATAATCTT
1 TCTCAAGTAAACTCAAAATCCGAAAAAAGATACTCCTAGCTGACACTAATGAATTCCACAATCTT
*
176333 GTCATGATTTCCATTCAAAGAAGCCTAGCAATGATAAAACGAGATGCCAATCTACATGCAACCCT
66 GTCATGATTTCCATTCAAAGAAGCCTAGCAATGATAACACGAGATGCCAATCTACATGCAACCCT
176398 ATTGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTT
131 ATTGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTT
* *
176448 TCTCAAGTAAACTCAAAATCCGAAAAACGATACTCCTAGCTGACAATAATGAATTCCACAATCTT
1 TCTCAAGTAAACTCAAAATCCGAAAAAAGATACTCCTAGCTGACACTAATGAATTCCACAATCTT
*
176513 GTCATGATTTCCATTCAAAGAAGCCTAGCAATGATAACACGAGATGCCAATCGACATGCAACCCT
66 GTCATGATTTCCATTCAAAGAAGCCTAGCAATGATAACACGAGATGCCAATCTACATGCAACCCT
176578 ATTGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTT
131 ATTGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTT
176628 TCTCAAGTAAACTC--AATCC-AAAAAAGATACTCCTAGCTGACACTAATGAATTCCACAATCTT
1 TCTCAAGTAAACTCAAAATCCGAAAAAAGATACTCCTAGCTGACACTAATGAATTCCACAATCTT
*
176690 GTCATGATTTCCATTCAAAGAAGCCTAGCAATGATAACACGAGATGCCAATCTACAAGCAACCCT
66 GTCATGATTTCCATTCAAAGAAGCCTAGCAATGATAACACGAGATGCCAATCTACATGCAACCCT
*
176755 ATTGAAGCCAAGAACAATAAAGTCTCCAGGAAACTCATTTTCTTGATGTT
131 ATTGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTT
* *
176805 TCTCAAGTAAACTCAAAATCCGAAAAACGATACTCCTAGCTGACAATAATGAATTCCACAATCTT
1 TCTCAAGTAAACTCAAAATCCGAAAAAAGATACTCCTAGCTGACACTAATGAATTCCACAATCTT
* * *
176870 GTCATGATTTCCATTCAAAGAAGCCTAGCAATGATAACACAAGATGTCAATCGACATGCAACCCT
66 GTCATGATTTCCATTCAAAGAAGCCTAGCAATGATAACACGAGATGCCAATCTACATGCAACCCT
* *
176935 ACTGAAGCCAAGAACAATAAAGTCTCCAGGAAACTCATTTTCTTGATGTT
131 ATTGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTT
*
176985 TCTCAAGTAAACTCAAAATCC-AAAAAAGATACTCCTAGCTAACACTAATGAATTCCACAATCTT
1 TCTCAAGTAAACTCAAAATCCGAAAAAAGATACTCCTAGCTGACACTAATGAATTCCACAATCTT
* *
177049 GTCATGATTTCCATTCAAAGAAGCCTAGCAATGATAACACGAGATGCCAATCTACATGCGATCCT
66 GTCATGATTTCCATTCAAAGAAGCCTAGCAATGATAACACGAGATGCCAATCTACATGCAACCCT
*
177114 ATTGAAGCCAAGAACAATAAAGTCTGAAGGAAACTCATTTTCTTGATGTT
131 ATTGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTT
* * * *
177164 TCTCAATTAAACTCAAAATCTG-AAAAAGATAGTCCTAGCTGACACTAATGAATTCCATAATCTT
1 TCTCAAGTAAACTCAAAATCCGAAAAAAGATACTCCTAGCTGACACTAATGAATTCCACAATCTT
177228 GTCATGATTTCCATTCAAAGAAGCCTAGCAATGAT-A-ACGAGATGCCAATCTACATGC
66 GTCATGATTTCCATTCAAAGAAGCCTAGCAATGATAACACGAGATGCCAATCTACATGC
177285 GACTGCGGAA
Statistics
Matches: 797, Mismatches: 36, Indels: 11
0.94 0.04 0.01
Matches are distributed among these distances:
177 188 0.24
178 6 0.01
179 245 0.31
180 358 0.45
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.26
Consensus pattern (180 bp):
TCTCAAGTAAACTCAAAATCCGAAAAAAGATACTCCTAGCTGACACTAATGAATTCCACAATCTT
GTCATGATTTCCATTCAAAGAAGCCTAGCAATGATAACACGAGATGCCAATCTACATGCAACCCT
ATTGAAGCCAAGAACAATAAAGTCTCAAGGAAACTCATTTTCTTGATGTT
Found at i:178333 original size:4 final size:5
Alignment explanation
Indices: 178310--178351 Score: 50
Period size: 5 Copynumber: 8.4 Consensus size: 5
178300 AATAAAACTC
* *
178310 AATAA AATAA AATAA AAT-A AATAA AATAT TATAA AATTAA AA
1 AATAA AATAA AATAA AATAA AATAA AATAA AATAA AA-TAA AA
178352 ATTATTATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
4 4 0.13
5 22 0.71
6 5 0.16
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (5 bp):
AATAA
Found at i:178343 original size:19 final size:19
Alignment explanation
Indices: 178310--178363 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 19
178300 AATAAAACTC
**
178310 AATAAAATAAAATAAAATA
1 AATAAAATATTATAAAATA
*
178329 AATAAAATATTATAAAATT
1 AATAAAATATTATAAAATA
*
178348 AA-AAATTATTATAAAA
1 AATAAAATATTATAAAA
178364 ATTATAAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
18 13 0.42
19 18 0.58
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (19 bp):
AATAAAATATTATAAAATA
Found at i:178374 original size:8 final size:8
Alignment explanation
Indices: 178337--178380 Score: 52
Period size: 8 Copynumber: 5.1 Consensus size: 8
178327 TAAATAAAAT
178337 ATTATAAA
1 ATTATAAA
*
178345 ATTAAAAA
1 ATTATAAA
178353 TTATTATAAAA
1 --ATTAT-AAA
178364 ATTATAAA
1 ATTATAAA
178372 ATTATAAA
1 ATTATAAA
178380 A
1 A
178381 AAACTTTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
8 19 0.61
9 5 0.16
10 4 0.13
11 3 0.10
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
ATTATAAA
Found at i:178382 original size:19 final size:19
Alignment explanation
Indices: 178342--178383 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
178332 AAAATATTAT
*
178342 AAAATTAAAAATTATTATA
1 AAAATTAAAAATTATTAAA
178361 AAAATTATAAAATTA-TAAA
1 AAAATTA-AAAATTATTAAA
178380 AAAA
1 AAAA
178384 CTTTTAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAATTAAAAATTATTAAA
Found at i:178383 original size:20 final size:19
Alignment explanation
Indices: 178342--178383 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
178332 AAAATATTAT
* *
178342 AAAATTAAAAATTATTATA
1 AAAATTAAAAATTATAAAA
178361 AAAATTATAAAATTATAAAA
1 AAAATTA-AAAATTATAAAA
178381 AAA
1 AAA
178384 CTTTTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAATTAAAAATTATAAAA
Found at i:178658 original size:12 final size:12
Alignment explanation
Indices: 178643--178685 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
178633 AAAAAGACAA
178643 TAAAAAATCCTC
1 TAAAAAATCCTC
**
178655 TAAAAACATATTC
1 TAAAAA-ATCCTC
*
178668 AAAAAAATCCTC
1 TAAAAAATCCTC
178680 TAAAAA
1 TAAAAA
178686 GAGTATTCAA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
12 15 0.62
13 9 0.38
ACGTcount: A:0.58, C:0.19, G:0.00, T:0.23
Consensus pattern (12 bp):
TAAAAAATCCTC
Found at i:178672 original size:25 final size:26
Alignment explanation
Indices: 178644--178695 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
178634 AAAAGACAAT
178644 AAAAAATCCTCTAAAAACA-TATTCA
1 AAAAAATCCTCTAAAAACAGTATTCA
*
178669 AAAAAATCCTCTAAAAAGAGTATTCA
1 AAAAAATCCTCTAAAAACAGTATTCA
178695 A
1 A
178696 GTATTTATAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.56, C:0.17, G:0.04, T:0.23
Consensus pattern (26 bp):
AAAAAATCCTCTAAAAACAGTATTCA
Found at i:178898 original size:24 final size:25
Alignment explanation
Indices: 178860--178906 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
178850 AAAAAGATCT
*
178860 AAAAACAAATAAAAAATTTTAAATA
1 AAAAACAAATAAAAAATATTAAATA
*
178885 AAAAACTAAT-AAAAATATTAAA
1 AAAAACAAATAAAAAATATTAAA
178907 AATTATTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.23
Consensus pattern (25 bp):
AAAAACAAATAAAAAATATTAAATA
Found at i:182073 original size:19 final size:20
Alignment explanation
Indices: 182049--182086 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
182039 AAAATTACAA
182049 AAAAATA-AAAATAATTTTC
1 AAAAATAGAAAATAATTTTC
182068 AAAAATAGAAAATAATTTT
1 AAAAATAGAAAATAATTTT
182087 TAAATTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.32
Consensus pattern (20 bp):
AAAAATAGAAAATAATTTTC
Found at i:189120 original size:29 final size:29
Alignment explanation
Indices: 189088--189178 Score: 89
Period size: 29 Copynumber: 3.1 Consensus size: 29
189078 AAAATATGAC
189088 TTTTAGAAATTTGAGGGCAAAATGGTAAT
1 TTTTAGAAATTTGAGGGCAAAATGGTAAT
* ** * *
189117 TTTTGGATGTTCGAGGGCAAAAT-GTCA-
1 TTTTAGAAATTTGAGGGCAAAATGGTAAT
189144 TTTTAGAAAAGTTTG-GGGTCAAAATGGTAAT
1 TTTTAG-AAA-TTTGAGGG-CAAAATGGTAAT
189175 TTTT
1 TTTT
189179 TGATGTTTAG
Statistics
Matches: 47, Mismatches: 10, Indels: 8
0.72 0.15 0.12
Matches are distributed among these distances:
27 5 0.11
28 7 0.15
29 28 0.60
30 3 0.06
31 4 0.09
ACGTcount: A:0.32, C:0.05, G:0.25, T:0.37
Consensus pattern (29 bp):
TTTTAGAAATTTGAGGGCAAAATGGTAAT
Found at i:189186 original size:29 final size:28
Alignment explanation
Indices: 189088--189206 Score: 82
Period size: 29 Copynumber: 4.1 Consensus size: 28
189078 AAAATATGAC
**
189088 TTTTAGAAATTTGAGGGCAAAATGGTAAT
1 TTTTAGATGTTTGAGGGCAAAAT-GTAAT
* * *
189117 TTTTGGATGTTCGAGGGCAAAATGTCA-
1 TTTTAGATGTTTGAGGGCAAAATGTAAT
*
189144 TTTTAGAAAAGTTTG-GGGTCAAAATGGTAAT
1 TTTTAG--ATGTTTGAGGG-CAAAAT-GTAAT
* *
189175 TTTTTGATGTTT-AGGGGTAGAAATGTAAT
1 TTTTAGATGTTTGA-GGGCA-AAATGTAAT
189204 TTT
1 TTT
189207 GGAAAATTTT
Statistics
Matches: 70, Mismatches: 12, Indels: 16
0.71 0.12 0.16
Matches are distributed among these distances:
27 5 0.07
28 6 0.09
29 44 0.63
30 10 0.14
31 5 0.07
ACGTcount: A:0.31, C:0.04, G:0.26, T:0.39
Consensus pattern (28 bp):
TTTTAGATGTTTGAGGGCAAAATGTAAT
Found at i:189212 original size:59 final size:58
Alignment explanation
Indices: 189097--189296 Score: 194
Period size: 59 Copynumber: 3.4 Consensus size: 58
189087 CTTTTAGAAA
* * * *
189097 TTTGAGGG-CAAAATGGTAATTTTTGGATG-TTCGAGGGCAAAATGTCATTTTAGAAAAG
1 TTTGAGGGTCAAAAT-GTAATTTTTGGATGTTTAG-GGGTAAAATGTAATTTTGGAAAAG
* *
189155 TTTG-GGGTCAAAATGGTAATTTTTTGATGTTTAGGGGTAGAAATGTAATTTTGGAAAAT
1 TTTGAGGGTCAAAAT-GTAATTTTTGGATGTTTAGGGGTA-AAATGTAATTTTGGAAAAG
* * * * *
189214 TTTG-GGGTGAAAATGTGA-TTTTGGAAAAGTTAAGGTGTTAAAATGTAATTTTGGAAAAG
1 TTTGAGGGTCAAAATGTAATTTTTGG--ATGTTTAGG-GGTAAAATGTAATTTTGGAAAAG
*
189273 TTCGAGGGTCAAAATGTAATTTTT
1 TTTGAGGGTCAAAATGTAATTTTT
189297 AAATAAAATA
Statistics
Matches: 118, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
57 8 0.07
58 31 0.26
59 60 0.51
60 15 0.13
61 4 0.03
ACGTcount: A:0.33, C:0.04, G:0.27, T:0.37
Consensus pattern (58 bp):
TTTGAGGGTCAAAATGTAATTTTTGGATGTTTAGGGGTAAAATGTAATTTTGGAAAAG
Found at i:189220 original size:29 final size:28
Alignment explanation
Indices: 189135--189295 Score: 119
Period size: 30 Copynumber: 5.5 Consensus size: 28
189125 GTTCGAGGGC
* *
189135 AAAATGTCATTTTAGAAAAGTTT-GGGGT
1 AAAATGTAATTTTGGAAAA-TTTAGGGGT
* **
189163 CAAAATGGTAATTTTTTG-ATGTTTAGGGGT
1 -AAAAT-GTAA-TTTTGGAAAATTTAGGGGT
*
189193 AGAAATGTAATTTTGGAAAATTTTGGGGT
1 A-AAATGTAATTTTGGAAAATTTAGGGGT
* * *
189222 GAAAATGTGATTTTGGAAAAGTTAAGGTGTT
1 -AAAATGTAATTTTGGAAAA-TTTAGG-GGT
* *
189253 AAAATGTAATTTTGGAAAAGTTCGAGGGT
1 AAAATGTAATTTTGGAAAATTTAG-GGGT
189282 CAAAATGTAATTTT
1 -AAAATGTAATTTT
189296 TAAATAAAAT
Statistics
Matches: 105, Mismatches: 17, Indels: 19
0.74 0.12 0.13
Matches are distributed among these distances:
28 5 0.05
29 43 0.41
30 50 0.48
31 7 0.07
ACGTcount: A:0.35, C:0.02, G:0.25, T:0.37
Consensus pattern (28 bp):
AAAATGTAATTTTGGAAAATTTAGGGGT
Found at i:190952 original size:6 final size:6
Alignment explanation
Indices: 190941--191043 Score: 67
Period size: 6 Copynumber: 17.8 Consensus size: 6
190931 TAATTTTTAA
* * * *
190941 TTAAAT TTAAAT TT-AAT TTAAA- ATAAAT TTAAAC TCAAA- -AAAAGT
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAA-T
* * *
190986 TTAAAT TTAAA- ATAAAT TTAAAC TTAAA- -TAAAT TTAAAT TAAAATT
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAA-T
191032 TTAAAAT TTAAA
1 TT-AAAT TTAAA
191044 ATTAGGTTCC
Statistics
Matches: 76, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
4 7 0.09
5 13 0.17
6 45 0.59
7 8 0.11
8 3 0.04
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (6 bp):
TTAAAT
Found at i:190953 original size:11 final size:11
Alignment explanation
Indices: 190939--191031 Score: 59
Period size: 11 Copynumber: 8.4 Consensus size: 11
190929 GATAATTTTT
190939 AATTAAATTTA
1 AATTAAATTTA
*
190950 AATTTAATTTA
1 AATTAAATTTA
*
190961 AAATAAATTTA
1 AATTAAATTTA
* *
190972 AACTCAAA--AA
1 AA-TTAAATTTA
190982 AAGTTTAAATTTA
1 AA--TTAAATTTA
*
190995 AAATAAATTTA
1 AATTAAATTTA
191006 AACTTAAA--TA
1 AA-TTAAATTTA
*
191016 AATTTAAATTAA
1 AA-TTAAATTTA
191028 AATT
1 AATT
191032 TTAAAATTTA
Statistics
Matches: 62, Mismatches: 13, Indels: 14
0.70 0.15 0.16
Matches are distributed among these distances:
10 12 0.19
11 37 0.60
12 10 0.16
13 3 0.05
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (11 bp):
AATTAAATTTA
Found at i:190957 original size:16 final size:17
Alignment explanation
Indices: 190948--191030 Score: 102
Period size: 16 Copynumber: 5.1 Consensus size: 17
190938 TAATTAAATT
190948 TAAATTT-AATTTAAAA
1 TAAATTTAAATTTAAAA
* *
190964 TAAATTTAAACTCAAAA
1 TAAATTTAAATTTAAAA
190981 -AAAGTTTAAATTTAAAA
1 TAAA-TTTAAATTTAAAA
*
190998 TAAATTTAAACTT-AAA
1 TAAATTTAAATTTAAAA
191014 TAAATTTAAA-TTAAAA
1 TAAATTTAAATTTAAAA
191030 T
1 T
191031 TTTAAAATTT
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
15 2 0.03
16 27 0.47
17 26 0.45
18 3 0.05
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.37
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Found at i:190993 original size:34 final size:33
Alignment explanation
Indices: 190949--191030 Score: 123
Period size: 34 Copynumber: 2.5 Consensus size: 33
190939 AATTAAATTT
190949 AAATTT-AATTTAAAATAAATTTAAACTCAAAA
1 AAATTTAAATTTAAAATAAATTTAAACTCAAAA
* *
190981 AAAGTTTAAATTTAAAATAAATTTAAACTTAAAT
1 AAA-TTTAAATTTAAAATAAATTTAAACTCAAAA
191015 AAATTTAAA-TTAAAAT
1 AAATTTAAATTTAAAAT
191031 TTTAAAATTT
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
32 10 0.22
33 9 0.20
34 27 0.59
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.37
Consensus pattern (33 bp):
AAATTTAAATTTAAAATAAATTTAAACTCAAAA
Found at i:191619 original size:78 final size:78
Alignment explanation
Indices: 191516--191720 Score: 248
Period size: 78 Copynumber: 2.6 Consensus size: 78
191506 CCATGATCGG
* * * *
191516 GGTAAGAGATTGGCTGACGGTGATCTGCCCTAAGCACGGGGTAAGAGATCAAATGACTACAATCT
1 GGTAAGAGATTGGATGATGGCGATCTGCCCTAAGCTCGGGGTAAGAGATCAAATGACTACAATCT
*
191581 GCCCTAAGCTCAA
66 GCCCCAAGCTCAA
* * * *
191594 GGTAAGAGATTGGTTGATGGCGATCTGCCCTAGGCTCGGGGTAAGAGATCGAATGACTGCAATCT
1 GGTAAGAGATTGGATGATGGCGATCTGCCCTAAGCTCGGGGTAAGAGATCAAATGACTACAATCT
*
191659 GCCCCAAGCTCGA
66 GCCCCAAGCTCAA
* * * * * * * *
191672 GGAAAAAGATCGAATGGTTGCAATCTTCCCTAAGCTCGGGGTAAGAGAT
1 GGTAAGAGATTGGATGATGGCGATCTGCCCTAAGCTCGGGGTAAGAGAT
191721 TGGCTGAAGG
Statistics
Matches: 108, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
78 108 1.00
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.21
Consensus pattern (78 bp):
GGTAAGAGATTGGATGATGGCGATCTGCCCTAAGCTCGGGGTAAGAGATCAAATGACTACAATCT
GCCCCAAGCTCAA
Found at i:191708 original size:117 final size:117
Alignment explanation
Indices: 191575--191787 Score: 293
Period size: 117 Copynumber: 1.8 Consensus size: 117
191565 CAAATGACTA
* * * *
191575 CAATCTGCCCTAAGCTCAAGGTAAGAGATTGGTTGATGGCGATCTGCC-CTAGGCTCGGGGTAAG
1 CAATCTGCCCTAAGCTCAAGGTAAGAGATTGGCTGAAGGCGATCTGCCTC-AAGCTCGGGGTAAA
* *
191639 AGATCGAATGACTGCAATCTGCCCCAAGCTCGAGGAAAAAGATCGAATGGTTG
65 AGATCAAATGACTGCAATCTACCCCAAGCTCGAGGAAAAAGATCGAATGGTTG
* ** *
191692 CAATCTTCCCTAAGCTCGGGGTAAGAGATTGGCTGAAGGTGATCTGCCTCAAGCTCGGGGTAAAA
1 CAATCTGCCCTAAGCTCAAGGTAAGAGATTGGCTGAAGGCGATCTGCCTCAAGCTCGGGGTAAAA
* * *
191757 GATCAAATGGCTGCAATTTACCCCAGGCTCG
66 GATCAAATGACTGCAATCTACCCCAAGCTCG
191788 GGGTAAGAGA
Statistics
Matches: 82, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
117 81 0.99
118 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (117 bp):
CAATCTGCCCTAAGCTCAAGGTAAGAGATTGGCTGAAGGCGATCTGCCTCAAGCTCGGGGTAAAA
GATCAAATGACTGCAATCTACCCCAAGCTCGAGGAAAAAGATCGAATGGTTG
Found at i:191737 original size:78 final size:78
Alignment explanation
Indices: 191655--191995 Score: 400
Period size: 78 Copynumber: 4.4 Consensus size: 78
191645 AATGACTGCA
* * * * *
191655 ATCTGCCCCAAGCTCGAGGAAAAAGATCGAATGGTTGCAATCTTCCCTAAGCTCGGGGTAAGAGA
1 ATCTGCCCCAAGCTCGGGGTAAAAGATCAAATGGCTGCAATCTTCCCCAAGCTCGGGGTAAGAGA
191720 TTGGCTGAAGGTG
66 TTGGCTGAAGGTG
* *
191733 ATCTGCCTCAAGCTCGGGGTAAAAGATCAAATGGCTGCAAT-TTACCCCAGGCTCGGGGTAAGAG
1 ATCTGCCCCAAGCTCGGGGTAAAAGATCAAATGGCTGCAATCTT-CCCCAAGCTCGGGGTAAGAG
191797 ATTGGCT-AATGGTG
65 ATTGGCTGAA-GGTG
* * *
191811 ATCTGCCCCAGGCTCGGGGTAAAAGATCAAATGGCTACAATCTACCCCAAGCTCGGGGTAAGAGA
1 ATCTGCCCCAAGCTCGGGGTAAAAGATCAAATGGCTGCAATCTTCCCCAAGCTCGGGGTAAGAGA
* *
191876 TTAGCTGAAAGTG
66 TTGGCTGAAGGTG
* * * * * * *
191889 ATCTGTCCCAAGCTCGGGGTAAAAGATCGAATAGTTGTAATCTGCCCC-AGACTTGGGGTAAGAG
1 ATCTGCCCCAAGCTCGGGGTAAAAGATCAAATGGCTGCAATCTTCCCCAAG-CTCGGGGTAAGAG
* *
191953 ATTGGTTGATGGTG
65 ATTGGCTGAAGGTG
* * * * *
191967 ACCTTCCCCAGGCTCGGTGTAAGAGATCA
1 ATCTGCCCCAAGCTCGGGGTAAAAGATCA
191996 GATCTTCAAT
Statistics
Matches: 224, Mismatches: 34, Indels: 10
0.84 0.13 0.04
Matches are distributed among these distances:
77 6 0.03
78 215 0.96
79 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (78 bp):
ATCTGCCCCAAGCTCGGGGTAAAAGATCAAATGGCTGCAATCTTCCCCAAGCTCGGGGTAAGAGA
TTGGCTGAAGGTG
Found at i:191785 original size:156 final size:154
Alignment explanation
Indices: 191616--191954 Score: 412
Period size: 156 Copynumber: 2.2 Consensus size: 154
191606 GTTGATGGCG
* *
191616 ATCTGCCCTAGGCTCGGGGTAAGAGAT-CGAATGACTGCAATCTGCCCCAAGCTCGAGGAAAAAG
1 ATCTACCCCAGGCTCGGGGTAAGAGATGCGAATG-CTG--ATCTGCCCCAAGCTCGAGGAAAAAG
* * * * * * *
191680 ATCGAATGGTTGCAATCTTCCCTAAGCTCGGGGTAAGAGATTGGCTGAAGGTGATCTG-CCTCAA
63 ATCAAATGGCTACAATCTACCCCAAGCTCGGGGTAAGAGATTAGCTGAAAGTGATCTGTCC-CAA
*
191744 GCTCGGGGTAAAAGATCAAATGGCTGCA
127 GCTCGGGGTAAAAGATCAAATAGCTGCA
* * * * * *
191772 ATTTACCCCAGGCTCGGGGTAAGAGATTGGCTAATGGTGATCTGCCCCAGGCTCGGGGTAAAAGA
1 ATCTACCCCAGGCTCGGGGTAAGAGA-T-GCGAATGCTGATCTGCCCCAAGCTCGAGGAAAAAGA
191837 TCAAATGGCTACAATCTACCCCAAGCTCGGGGTAAGAGATTAGCTGAAAGTGATCTGTCCCAAGC
64 TCAAATGGCTACAATCTACCCCAAGCTCGGGGTAAGAGATTAGCTGAAAGTGATCTGTCCCAAGC
* * *
191902 TCGGGGTAAAAGATCGAATAGTTGTA
129 TCGGGGTAAAAGATCAAATAGCTGCA
* * *
191928 ATCTGCCCCAGACTTGGGGTAAGAGAT
1 ATCTACCCCAGGCTCGGGGTAAGAGAT
191955 TGGTTGATGG
Statistics
Matches: 156, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
155 1 0.01
156 145 0.93
157 3 0.02
158 2 0.01
159 5 0.03
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (154 bp):
ATCTACCCCAGGCTCGGGGTAAGAGATGCGAATGCTGATCTGCCCCAAGCTCGAGGAAAAAGATC
AAATGGCTACAATCTACCCCAAGCTCGGGGTAAGAGATTAGCTGAAAGTGATCTGTCCCAAGCTC
GGGGTAAAAGATCAAATAGCTGCA
Found at i:191826 original size:117 final size:116
Alignment explanation
Indices: 191576--191837 Score: 269
Period size: 117 Copynumber: 2.2 Consensus size: 116
191566 AAATGACTAC
* ** * * * *
191576 AATCTGCCCTAAGCTCAAGGTAAGAGATTGGTTGATGGCGATCTGCCCTAGGCTCGGGGTAAGAG
1 AATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGAAGGCGATCTGCCCTAAGCTCGGGGTAAAAG
* *
191641 ATCGAATGACTGCAATCTGCCCCAAGCTCGAGGAAAAAGATCGAATGGTTG
66 ATCAAATGACTGCAATCTACCCCAAGCTCGAGGAAAAAGATCGAATGGTTG
* * *
191692 CAATCTTCCCTAAGCTCGGGGTAAGAGATTGGCTGAAGGTGATCTG-CCTCAAGCTCGGGGTAAA
1 -AATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGAAGGCGATCTGCCCT-AAGCTCGGGGTAAA
* * * * * * *
191756 AGATCAAATGGCTGCAATTTACCCCAGGCTCGGGGTAAGAGATTGGCTAATGG-TG
64 AGATCAAATGACTGCAATCTACCCCAAGCTCGAGGAAAAAGA-T--CGAATGGTTG
* *
191811 -ATCTGCCCCAGGCTCGGGGTAAAAGAT
1 AATCTGCCCCAAGCTCGGGGTAAGAGAT
191838 CAAATGGCTA
Statistics
Matches: 120, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
116 3 0.03
117 108 0.90
118 1 0.01
119 2 0.02
120 6 0.05
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (116 bp):
AATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGAAGGCGATCTGCCCTAAGCTCGGGGTAAAAG
ATCAAATGACTGCAATCTACCCCAAGCTCGAGGAAAAAGATCGAATGGTTG
Done.