Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014114.1 Kokia drynarioides strain JFW-HI SEQ_129147, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1735
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37


Found at i:1492 original size:16 final size:16

Alignment explanation


    Indices: 1469--1514  Score: 56
    Period size: 16  Copynumber: 2.9  Consensus size: 16

       1459 CATTTGGTTC

                         *  
       1469 GCTGTAATGGAATGGA
          1 GCTGTAATGGAATAGA

             *       *      
       1485 GTTGTAATGTAATAGA
          1 GCTGTAATGGAATAGA

               *          
       1501 GCTATAATGGAATA
          1 GCTGTAATGGAATA

       1515 TGGTTGTAAT


Statistics
Matches: 24,  Mismatches: 6, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
  16   24  1.00

ACGTcount: A:0.37, C:0.04, G:0.28, T:0.30


Consensus pattern (16 bp):   
GCTGTAATGGAATAGA
Done.