Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014115.1 Kokia drynarioides strain JFW-HI SEQ_129148, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 337767
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Warning! 396 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:512 original size:17 final size:18
Alignment explanation
Indices: 490--525 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
480 AAAAAAAGTT
490 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
507 AATTAGGGTATAAATTGG
1 AATTAGGATATAAATTGG
525 A
1 A
526 TAGAAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:8957 original size:82 final size:82
Alignment explanation
Indices: 8817--8981 Score: 303
Period size: 82 Copynumber: 2.0 Consensus size: 82
8807 ATTTTAAAAA
* *
8817 TATATAAAGCAATTGCAAACAAATGAGTGTGTCTTTGATGGAGCACTGGGTATGGAATGTTCACT
1 TATATAAAGCAATTGCAAACAAATGAGTGCGTCTTTGATGGAGCACTGGGTATAGAATGTTCACT
8882 ACAAAGCTTGCTTTATT
66 ACAAAGCTTGCTTTATT
*
8899 TATATAAAGCAATTGCAAACAAATGAGTGCGTCTTTGATGGTGCACTGGGTATAGAATGTTCACT
1 TATATAAAGCAATTGCAAACAAATGAGTGCGTCTTTGATGGAGCACTGGGTATAGAATGTTCACT
8964 ACAAAGCTTGCTTTATT
66 ACAAAGCTTGCTTTATT
8981 T
1 T
8982 GCACTTAAAT
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
82 80 1.00
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.33
Consensus pattern (82 bp):
TATATAAAGCAATTGCAAACAAATGAGTGCGTCTTTGATGGAGCACTGGGTATAGAATGTTCACT
ACAAAGCTTGCTTTATT
Found at i:19086 original size:28 final size:29
Alignment explanation
Indices: 19055--19131 Score: 86
Period size: 28 Copynumber: 2.7 Consensus size: 29
19045 AAGGTTTTAC
19055 AAAAATAATTTTGA-GAAGATGCATTCT-A
1 AAAAATAATTTTGACG-AGATGCATTCTGA
** * *
19083 AAAAATAAAATTGACGTGATGTATTCTGA
1 AAAAATAATTTTGACGAGATGCATTCTGA
*
19112 AAAAATTATTTTGACGAGAT
1 AAAAATAATTTTGACGAGAT
19132 AAATTTTGTT
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
28 21 0.54
29 18 0.46
ACGTcount: A:0.45, C:0.06, G:0.16, T:0.32
Consensus pattern (29 bp):
AAAAATAATTTTGACGAGATGCATTCTGA
Found at i:21394 original size:41 final size:41
Alignment explanation
Indices: 21346--21528 Score: 233
Period size: 41 Copynumber: 4.4 Consensus size: 41
21336 GTAAAAAAAT
* * *
21346 GGAAGACTCATGACTCG-GAATGAGCATGGGATTATGAATAA
1 GGAAGACTCATGTCTCGAG-ATGAGAATGAGATTATGAATAA
21387 GGAAGACTCATGTCTCGAGATGAGAATGAGATTATGAATAA
1 GGAAGACTCATGTCTCGAGATGAGAATGAGATTATGAATAA
* * *
21428 GGAAGACTCATGTCTCGAGATGATAATGAGACTATTAATAA
1 GGAAGACTCATGTCTCGAGATGAGAATGAGATTATGAATAA
* * *
21469 GGAAGAATCATGTCTCGAGATGAGAATGAGAATATGGAAAAA
1 GGAAGACTCATGTCTCGAGATGAGAATGAGATTAT-GAATAA
* * *
21511 GGAACACTTATGACTCGA
1 GGAAGACTCATGTCTCGA
21529 TAGAGCATAA
Statistics
Matches: 125, Mismatches: 15, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
41 106 0.85
42 19 0.15
ACGTcount: A:0.39, C:0.11, G:0.26, T:0.23
Consensus pattern (41 bp):
GGAAGACTCATGTCTCGAGATGAGAATGAGATTATGAATAA
Found at i:22564 original size:18 final size:18
Alignment explanation
Indices: 22538--22573 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
22528 TACTGAGCCT
*
22538 TCAATATCGATACCAAAA
1 TCAAAATCGATACCAAAA
*
22556 TCAAAATCGATAGCAAAA
1 TCAAAATCGATACCAAAA
22574 CTGCTCTCTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.53, C:0.19, G:0.08, T:0.19
Consensus pattern (18 bp):
TCAAAATCGATACCAAAA
Found at i:23628 original size:90 final size:91
Alignment explanation
Indices: 23474--23658 Score: 363
Period size: 90 Copynumber: 2.0 Consensus size: 91
23464 ATAGTTTGAG
23474 ACTCGTCTACAAGAGCTTTTATTAGTATTTAATCTTTACATTAATGTAATTACAGAAAATAATGC
1 ACTCGTCTACAAGAGCTTTTATTAGTATTTAATCTTTACATTAATGTAATTACAGAAAATAATGC
23539 AACTTTTTATTTTTTTACGATTTAGT
66 AACTTTTTATTTTTTTACGATTTAGT
23565 ACTCGTCTAC-AGAGCTTTTATTAGTATTTAATCTTTACATTAATGTAATTACAGAAAATAATGC
1 ACTCGTCTACAAGAGCTTTTATTAGTATTTAATCTTTACATTAATGTAATTACAGAAAATAATGC
23629 AACTTTTTATTTTTTTACGATTTAGT
66 AACTTTTTATTTTTTTACGATTTAGT
23655 ACTC
1 ACTC
23659 ATCACAAAAA
Statistics
Matches: 94, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
90 84 0.89
91 10 0.11
ACGTcount: A:0.32, C:0.13, G:0.10, T:0.45
Consensus pattern (91 bp):
ACTCGTCTACAAGAGCTTTTATTAGTATTTAATCTTTACATTAATGTAATTACAGAAAATAATGC
AACTTTTTATTTTTTTACGATTTAGT
Found at i:23885 original size:20 final size:20
Alignment explanation
Indices: 23860--23900 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
23850 ATTTATAATA
23860 TTTGCATTATTTACTTCTAC
1 TTTGCATTATTTACTTCTAC
*
23880 TTTGCATTATTTACTTTTAC
1 TTTGCATTATTTACTTCTAC
23900 T
1 T
23901 AAACACTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.17, G:0.05, T:0.59
Consensus pattern (20 bp):
TTTGCATTATTTACTTCTAC
Found at i:27499 original size:28 final size:29
Alignment explanation
Indices: 27449--27565 Score: 136
Period size: 28 Copynumber: 4.2 Consensus size: 29
27439 GGCTTAACAA
*
27449 ATAC-TCTGTATTCT-GACTCGAAAAAACG
1 ATACTTCTGTATTCTAG-CTTGAAAAAACG
* *
27477 ATACTT-TGTATTCTAGCTTGAAAGAGCG
1 ATACTTCTGTATTCTAGCTTGAAAAAACG
* * *
27505 ATA-TTCTGTATTCTAGCTTGAAAGAGCT
1 ATACTTCTGTATTCTAGCTTGAAAAAACG
27533 ATA-TTCTGTATTCTAGCTTGAAAAAACG
1 ATACTTCTGTATTCTAGCTTGAAAAAACG
27561 ATACT
1 ATACT
27566 CTATTTTTGG
Statistics
Matches: 78, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
27 2 0.03
28 73 0.94
29 3 0.04
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (29 bp):
ATACTTCTGTATTCTAGCTTGAAAAAACG
Found at i:27605 original size:28 final size:28
Alignment explanation
Indices: 27571--27677 Score: 126
Period size: 28 Copynumber: 3.8 Consensus size: 28
27561 ATACTCTATT
*
27571 TTTGGCTCGAAAGAGCGTTATTCTGGAC
1 TTTGGCTCGAAAGAGCATTATTCTGGAC
* *
27599 TCTGGCTC-ATAAGAGCATTATTTTGGAC
1 TTTGGCTCGA-AAGAGCATTATTCTGGAC
* *
27627 TTTGGCTCGTAAGAGCAATATTCTGGAC
1 TTTGGCTCGAAAGAGCATTATTCTGGAC
* *
27655 TTTGGCTCAAAAAGTGCATTATT
1 TTTGGCTC-GAAAGAGCATTATT
27678 TTGTTTCTAG
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
27 1 0.02
28 54 0.83
29 10 0.15
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (28 bp):
TTTGGCTCGAAAGAGCATTATTCTGGAC
Found at i:27613 original size:83 final size:84
Alignment explanation
Indices: 27453--27614 Score: 186
Period size: 83 Copynumber: 1.9 Consensus size: 84
27443 TAACAAATAC
* * * * *
27453 TCTGTATTCTGACTCGAAAAAACGATACTTTGTATTCTAGCTTGAAAGAGCGATATTCTGTATTC
1 TCTGTATTCTGACTCGAAAAAACGATACTCTATATTCTAGCTCGAAAGAGCGATATTCTGGACTC
*
27518 TAGCTTGAAAGAGCTATAT
66 TAGCTTCAAAGAGCTATAT
* * * *
27537 TCTGTATTCT-AGCTTGAAAAAACGATACTCTAT-TTTTGGCTCGAAAGAGCGTTATTCTGGACT
1 TCTGTATTCTGA-CTCGAAAAAACGATACTCTATATTCTAGCTCGAAAGAGCGATATTCTGGACT
*
27600 CTGGC-TCATAAGAGC
65 CTAGCTTCA-AAGAGC
27615 ATTATTTTGG
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
82 2 0.03
83 35 0.54
84 28 0.43
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (84 bp):
TCTGTATTCTGACTCGAAAAAACGATACTCTATATTCTAGCTCGAAAGAGCGATATTCTGGACTC
TAGCTTCAAAGAGCTATAT
Found at i:27641 original size:56 final size:57
Alignment explanation
Indices: 27571--27680 Score: 159
Period size: 56 Copynumber: 1.9 Consensus size: 57
27561 ATACTCTATT
** *
27571 TTTGGCTCGAAAGAGCGTTATTCTGGACTCTGGCTC-ATAAGAGCATTATTTTGGAC
1 TTTGGCTCGAAAGAGCAATATTCTGGACTCTGGCTCAAAAAGAGCATTATTTTGGAC
* * *
27627 TTTGGCTCGTAAGAGCAATATTCTGGACTTTGGCTCAAAAAGTGCATTATTTTG
1 TTTGGCTCGAAAGAGCAATATTCTGGACTCTGGCTCAAAAAGAGCATTATTTTG
27681 TTTCTAGCTC
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
56 32 0.68
57 15 0.32
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.35
Consensus pattern (57 bp):
TTTGGCTCGAAAGAGCAATATTCTGGACTCTGGCTCAAAAAGAGCATTATTTTGGAC
Found at i:27737 original size:27 final size:28
Alignment explanation
Indices: 27670--27738 Score: 70
Period size: 28 Copynumber: 2.5 Consensus size: 28
27660 CTCAAAAAGT
* *
27670 GCATTATTTTGTTTCTAGCTCGAAAGGA
1 GCATTAATCTGTTTCTAGCTCGAAAGGA
* * *
27698 GCATTAATTTGTTTCTAGCTTGTAA-GA
1 GCATTAATCTGTTTCTAGCTCGAAAGGA
27725 GCGA-TAATCTGTTT
1 GC-ATTAATCTGTTT
27739 TGAGCGATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
27 13 0.36
28 23 0.64
ACGTcount: A:0.25, C:0.13, G:0.20, T:0.42
Consensus pattern (28 bp):
GCATTAATCTGTTTCTAGCTCGAAAGGA
Found at i:30678 original size:62 final size:62
Alignment explanation
Indices: 30537--30664 Score: 231
Period size: 62 Copynumber: 2.1 Consensus size: 62
30527 TTGATTCTCA
*
30537 ATTAAATGAAAAAATATGCCAAAACTAATGTGTGCAAAAATATTCAAATGAACTTCGATTTT
1 ATTAAATGAAATAATATGCCAAAACTAATGTGTGCAAAAATATTCAAATGAACTTCGATTTT
30599 ATTAAATGAAATAATATGCCAAAACTAATGTGTAG-AAAAATATTCAAATGAACTTCGATTTT
1 ATTAAATGAAATAATATGCCAAAACTAATGTGT-GCAAAAATATTCAAATGAACTTCGATTTT
30661 ATTA
1 ATTA
30665 TCGATGGAGA
Statistics
Matches: 64, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
62 63 0.98
63 1 0.02
ACGTcount: A:0.47, C:0.10, G:0.11, T:0.32
Consensus pattern (62 bp):
ATTAAATGAAATAATATGCCAAAACTAATGTGTGCAAAAATATTCAAATGAACTTCGATTTT
Found at i:30767 original size:21 final size:22
Alignment explanation
Indices: 30742--30790 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
30732 AGAAAATTTT
**
30742 GAGAATTT-TGAGAGCTTTAGA
1 GAGAATTTGTGAGAAATTTAGA
*
30763 GAGAAATTTGTGTGAAATTTAGA
1 GAG-AATTTGTGAGAAATTTAGA
30786 GAGAA
1 GAGAA
30791 AATTGAGTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 3 0.13
22 7 0.30
23 13 0.57
ACGTcount: A:0.39, C:0.02, G:0.29, T:0.31
Consensus pattern (22 bp):
GAGAATTTGTGAGAAATTTAGA
Found at i:33095 original size:14 final size:15
Alignment explanation
Indices: 33076--33108 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
33066 TGTGACAAAC
*
33076 ATAAATTTAAAAT-T
1 ATAAATTAAAAATGT
33090 ATAAATTAAAAATGT
1 ATAAATTAAAAATGT
33105 ATAA
1 ATAA
33109 TTTTTTTCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (15 bp):
ATAAATTAAAAATGT
Found at i:41872 original size:116 final size:116
Alignment explanation
Indices: 41729--41980 Score: 366
Period size: 117 Copynumber: 2.2 Consensus size: 116
41719 TAAAAAATAC
* * * * **
41729 AATTTTTTTGTATTGGCTATCAAATGGCTGACA-CTCTTTTT-TCTCAAAAAAAATTGTATTTTT
1 AATTTTTTTGTGTTGGCCATCAAATGGCCGACATCCCTTTTTCT-TCAAAAAAAATTACATTTTT
*
41792 GGGTGTTGGTCATTGCATGGCCGACACCCCCTTTTTAAGAAAAAAAATTTCAA
65 GGGTGTTGGCCATTGCATGGCCGACACCCCCTTTTTAA-AAAAAAAATTTCAA
* *
41845 ATTTTTTTTGTGTTGGCCATGC-AATGGCCGACATCCCTTTTTCTTGAAAAAAAATTACATTTTT
1 AATTTTTTTGTGTTGGCCAT-CAAATGGCCGACATCCCTTTTTCTTCAAAAAAAATTACATTTTT
*
41909 GGGTGTTGGCCATTGCATGGCCGACACCCCCTTTTTGAAAAAAAAATTTCAA
65 GGGTGTTGGCCATTGCATGGCCGACACCCCCTTTTTAAAAAAAAAATTTCAA
41961 AATTTTTTTGTGTTGGCCAT
1 AATTTTTTTGTGTTGGCCAT
41981 TGCATGACCG
Statistics
Matches: 122, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
116 60 0.49
117 61 0.50
118 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (116 bp):
AATTTTTTTGTGTTGGCCATCAAATGGCCGACATCCCTTTTTCTTCAAAAAAAATTACATTTTTG
GGTGTTGGCCATTGCATGGCCGACACCCCCTTTTTAAAAAAAAAATTTCAA
Found at i:41885 original size:59 final size:60
Alignment explanation
Indices: 41794--42027 Score: 293
Period size: 59 Copynumber: 4.0 Consensus size: 60
41784 GTATTTTTGG
* *
41794 GTGTTGGTCATTGCATGGCCGACACCCCCTTTTT-AAGAAAAAAAATTTCAAATTTTTTTT
1 GTGTTGGCCATTGCATGGCCGACACCCCCTTTTTCAAGAAAAAAAA-TTCAAAATTTTTTT
* ** * **
41854 GTGTTGGCCA-TGCAATGGCCGACA-TCCCTTTTTCTTGAAAAAAAATT--ACATTTTTGG
1 GTGTTGGCCATTGC-ATGGCCGACACCCCCTTTTTCAAGAAAAAAAATTCAAAATTTTTTT
* *
41911 GTGTTGGCCATTGCATGGCCGACACCCCCTTTTTGAA-AAAAAAATTTCAAAATTTTTTT
1 GTGTTGGCCATTGCATGGCCGACACCCCCTTTTTCAAGAAAAAAAATTCAAAATTTTTTT
* *
41970 GTGTTGGCCATTGCATGACCGACA-CCCCTTTTTGAAGAAAAAAAATTCAAAATTTTTT
1 GTGTTGGCCATTGCATGGCCGACACCCCCTTTTTCAAGAAAAAAAATTCAAAATTTTTT
42028 GCATGGCCAA
Statistics
Matches: 149, Mismatches: 18, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
57 35 0.23
58 23 0.15
59 63 0.42
60 28 0.19
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (60 bp):
GTGTTGGCCATTGCATGGCCGACACCCCCTTTTTCAAGAAAAAAAATTCAAAATTTTTTT
Found at i:41923 original size:117 final size:114
Alignment explanation
Indices: 41729--42012 Score: 376
Period size: 116 Copynumber: 2.5 Consensus size: 114
41719 TAAAAAATAC
* * * * * **
41729 AATTTTTTTGTATTGGCTAT-CAAATGGCTGACACTCTTTTTTCTCAAAAAAAATTGTATTTTTG
1 AATTTTTTTGTGTTGGCCATGC-AATGGCCGACACCCTTTTTT-TGAAAAAAAATTACATTTTTG
*
41793 GGTGTTGGTCATTGCATGGCCGACACCCCCTTTTTAAGAAAAAAAATTTCAA
64 GGTGTTGGCCATTGCATGGCCGACACCCCCTTTTTAA-AAAAAAAATTTCAA
*
41845 ATTTTTTTTGTGTTGGCCATGCAATGGCCGACATCCCTTTTTCTTGAAAAAAAATTACATTTTTG
1 AATTTTTTTGTGTTGGCCATGCAATGGCCGACA-CCCTTTTT-TTGAAAAAAAATTACATTTTTG
*
41910 GGTGTTGGCCATTGCATGGCCGACACCCCCTTTTTGAAAAAAAAATTTCAA
64 GGTGTTGGCCATTGCATGGCCGACACCCCCTTTTTAAAAAAAAAATTTCAA
* *
41961 AATTTTTTTGTGTTGGCCATTGC-ATGACCGACACCC-CTTTTTGAAGAAAAAA
1 AATTTTTTTGTGTTGGCCA-TGCAATGGCCGACACCCTTTTTTTGAA-AAAAAA
42013 AATTCAAAAT
Statistics
Matches: 150, Mismatches: 13, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
113 5 0.03
114 9 0.06
115 3 0.02
116 68 0.45
117 64 0.43
118 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (114 bp):
AATTTTTTTGTGTTGGCCATGCAATGGCCGACACCCTTTTTTTGAAAAAAAATTACATTTTTGGG
TGTTGGCCATTGCATGGCCGACACCCCCTTTTTAAAAAAAAAATTTCAA
Found at i:42204 original size:116 final size:114
Alignment explanation
Indices: 42043--42306 Score: 356
Period size: 116 Copynumber: 2.3 Consensus size: 114
42033 GCCAATACTC
*
42043 AAAAATGCAA-TTTTTTTCGAGAAAAA-GGAGTGTTGACCATACAATTGCCAACACCCAAAAATG
1 AAAAATGCAATTTTTTTTCGA-AAAAAGGGGGTGTTGACCATACAATTGCCAACACCCAAAAATG
* * *
42106 CAA-TTTTTTTCGAGAAAAGATGGTGTCGGCCATGCAATGGCCAACACCA
65 CAATTTTTTTTCGAGAAAAGAGGGTGTCGACCATGCAATAGCCAACACCA
** *
42155 AAAAATTTTG-AATTTTTTTTTCTCAAAAAGGGGGTGTTGACCATGCAATTGCCAACACCCAAAA
1 AAAAA---TGCAA-TTTTTTTTCGAAAAAAGGGGGTGTTGACCATACAATTGCCAACACCCAAAA
* * *
42219 ATGTAATTTTTTTTTCGAGAAAAGAGGGTGTCGACCATGCAATAGCCAATACCC
62 ATGCAA-TTTTTTTTCGAGAAAAGAGGGTGTCGACCATGCAATAGCCAACACCA
42273 AAAAATGCAATTTTTTTTCGAAAAAAGGGGGTGT
1 AAAAATGCAATTTTTTTTCGAAAAAAGGGGGTGT
42307 CGGCCATTTG
Statistics
Matches: 131, Mismatches: 12, Indels: 15
0.83 0.08 0.09
Matches are distributed among these distances:
112 5 0.04
114 2 0.02
115 31 0.24
116 47 0.36
118 46 0.35
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (114 bp):
AAAAATGCAATTTTTTTTCGAAAAAAGGGGGTGTTGACCATACAATTGCCAACACCCAAAAATGC
AATTTTTTTTCGAGAAAAGAGGGTGTCGACCATGCAATAGCCAACACCA
Found at i:42255 original size:58 final size:57
Alignment explanation
Indices: 42033--42313 Score: 311
Period size: 56 Copynumber: 4.9 Consensus size: 57
42023 TTTTTGCATG
* * * *
42033 GCCAATACTCAAAAATGCAA-TTTTTTTCGAGAAAA-AGGAGTGTTGACCATACAATT
1 GCCAACACCCAAAAATGCAATTTTTTTTCGAGAAAAGAGG-GTGTCGACCATGCAATT
* * *
42089 GCCAACACCCAAAAATGCAA-TTTTTTTCGAGAAAAGATGGTGTCGGCCATGCAATG
1 GCCAACACCCAAAAATGCAATTTTTTTTCGAGAAAAGAGGGTGTCGACCATGCAATT
* * * *
42145 GCCAACACCAAAAAATTTTG-AATTTTTTTTTCTCA-AAAAGGGGGTGTTGACCATGCAATT
1 GCCAACACCCAAAAA---TGCAA-TTTTTTTTC-GAGAAAAGAGGGTGTCGACCATGCAATT
* *
42205 GCCAACACCCAAAAATGTAATTTTTTTTTCGAGAAAAGAGGGTGTCGACCATGCAATA
1 GCCAACACCCAAAAATGCAA-TTTTTTTTCGAGAAAAGAGGGTGTCGACCATGCAATT
* * * *
42263 GCCAATACCCAAAAATGCAATTTTTTTTCGAAAAAAGGGGGTGTCGGCCAT
1 GCCAACACCCAAAAATGCAATTTTTTTTCGAGAAAAGAGGGTGTCGACCAT
42314 TTGATGGTCA
Statistics
Matches: 192, Mismatches: 24, Indels: 17
0.82 0.10 0.07
Matches are distributed among these distances:
56 60 0.31
57 33 0.17
58 54 0.28
59 2 0.01
60 42 0.22
61 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (57 bp):
GCCAACACCCAAAAATGCAATTTTTTTTCGAGAAAAGAGGGTGTCGACCATGCAATT
Found at i:42344 original size:57 final size:57
Alignment explanation
Indices: 42053--42344 Score: 248
Period size: 58 Copynumber: 5.1 Consensus size: 57
42043 AAAAATGCAA
* * * * * * *
42053 TTTTTTTCGAGAAAAAG-GAGTGTTGACCATACAATTGCCAACACCCAAAAATGCA-A
1 TTTTTTTCGA-AAAAAGAGGGTGTCGACCATGCAATGGCCAACACCAAAAAATGTATT
* * * *
42109 TTTTTTTCGAGAAAAGATGGTGTCGGCCATGCAATGGCCAACACCAAAAAATTTTGAATT
1 TTTTTTTCGAAAAAAGAGGGTGTCGACCATGCAATGGCCAACACCAAAAAA---TGTATT
** * * * *
42169 TTTTTTTCTCAAAAAGGGGGTGTTGACCATGCAATTGCCAACACCCAAAAATGTAATT
1 TTTTTTTCGAAAAAAGAGGGTGTCGACCATGCAATGGCCAACACCAAAAAATGT-ATT
* * * * * *
42227 TTTTTTTCGAGAAAAGAGGGTGTCGACCATGCAATAGCCAATACCCAAAAATGCAAT
1 TTTTTTTCGAAAAAAGAGGGTGTCGACCATGCAATGGCCAACACCAAAAAATGTATT
* * *** *
42284 TTTTTTTCGAAAAAAGGGGGTGTCGGCCATTTGATGGTCAACA-CAAAAAATTGTATT
1 TTTTTTTCGAAAAAAGAGGGTGTCGACCATGCAATGGCCAACACCAAAAAA-TGTATT
42341 TTTT
1 TTTT
42345 ATTTGACTTT
Statistics
Matches: 188, Mismatches: 41, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
55 5 0.03
56 43 0.23
57 46 0.24
58 49 0.26
59 3 0.02
60 42 0.22
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (57 bp):
TTTTTTTCGAAAAAAGAGGGTGTCGACCATGCAATGGCCAACACCAAAAAATGTATT
Found at i:42635 original size:4 final size:4
Alignment explanation
Indices: 42626--42655 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
42616 ATAGTTGAGA
42626 AGGC AGGC AGGC AGGC AGGC AGGC AGGC AG
1 AGGC AGGC AGGC AGGC AGGC AGGC AGGC AG
42656 ACAAGGTTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.27, C:0.23, G:0.50, T:0.00
Consensus pattern (4 bp):
AGGC
Found at i:44559 original size:28 final size:27
Alignment explanation
Indices: 44489--44560 Score: 74
Period size: 28 Copynumber: 2.6 Consensus size: 27
44479 TATTTTATTT
44489 TTTTAAGGGATCCAAAAAAATTTTAAC
1 TTTTAAGGGATCCAAAAAAATTTTAAC
* * * **
44516 TTTTAAGGAATTCAAATTATTTTTCTAA-
1 TTTTAAGGGATCCAAA-AAAATTT-TAAC
44544 TTTTAAGGGATCCAAAA
1 TTTTAAGGGATCCAAAA
44561 TTCTAGTTTC
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
27 14 0.40
28 18 0.51
29 3 0.09
ACGTcount: A:0.40, C:0.10, G:0.11, T:0.39
Consensus pattern (27 bp):
TTTTAAGGGATCCAAAAAAATTTTAAC
Found at i:49430 original size:203 final size:203
Alignment explanation
Indices: 49081--49492 Score: 806
Period size: 203 Copynumber: 2.0 Consensus size: 203
49071 TCAATACCCT
49081 AAATCACTAACCATTATGCCTTAATGACACCATCACAAATCAAGAATTTCAAAACATTATATCCG
1 AAATCACTAACCATTATGCCTTAATGACACCATCACAAATCAAGAATTTCAAAACATTATATCCG
*
49146 TCATCAACACCAATTATCATGCCATATTTGCATCAAGTAACCCCTTAACAAGAACACTTTAGACC
66 CCATCAACACCAATTATCATGCCATATTTGCATCAAGTAACCCCTTAACAAGAACACTTTAGACC
49211 ATACAAATCAACTTACAAATTTACCTCATTTAGTACACAAATGACATATCCATTTATACCTTCTA
131 ATACAAATCAACTTACAAATTTACCTCATTTAGTACACAAATGACATATCCATTTATACCTTCTA
49276 TATCATTG
196 TATCATTG
49284 AAATCACTAACCATTATGCCTTAATGACACCATCACAAATCAAGAATTTCAAAACATTATATCCG
1 AAATCACTAACCATTATGCCTTAATGACACCATCACAAATCAAGAATTTCAAAACATTATATCCG
*
49349 CCATTAACACCAATTATCATGCCATATTTGCATCAAGTAACCCCTTAACAAGAACACTTTAGACC
66 CCATCAACACCAATTATCATGCCATATTTGCATCAAGTAACCCCTTAACAAGAACACTTTAGACC
49414 ATACAAATCAACTTACAAATTTACCTCATTTAGTACACAAATGACATATCCATTTATACCTTCTA
131 ATACAAATCAACTTACAAATTTACCTCATTTAGTACACAAATGACATATCCATTTATACCTTCTA
49479 TATCATTG
196 TATCATTG
49487 AAATCA
1 AAATCA
49493 TGCACACATT
Statistics
Matches: 207, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
203 207 1.00
ACGTcount: A:0.40, C:0.25, G:0.06, T:0.29
Consensus pattern (203 bp):
AAATCACTAACCATTATGCCTTAATGACACCATCACAAATCAAGAATTTCAAAACATTATATCCG
CCATCAACACCAATTATCATGCCATATTTGCATCAAGTAACCCCTTAACAAGAACACTTTAGACC
ATACAAATCAACTTACAAATTTACCTCATTTAGTACACAAATGACATATCCATTTATACCTTCTA
TATCATTG
Found at i:55360 original size:22 final size:24
Alignment explanation
Indices: 55325--55375 Score: 61
Period size: 22 Copynumber: 2.2 Consensus size: 24
55315 TGTAAAAACA
* *
55325 ATATATGTAAATATA-AAATA-GT
1 ATATATATAAATATATAAAGATGT
*
55347 ATATATATATATATATAAAGATGT
1 ATATATATAAATATATAAAGATGT
55371 ATATA
1 ATATA
55376 ACATTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 13 0.54
23 4 0.17
24 7 0.29
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (24 bp):
ATATATATAAATATATAAAGATGT
Found at i:55362 original size:24 final size:24
Alignment explanation
Indices: 55325--55375 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
55315 TGTAAAAACA
*
55325 ATATATGTAAATATAAA-ATAGTAT
1 ATATATATAAATATAAAGAT-GTAT
*
55349 ATATATATATATATAAAGATGTAT
1 ATATATATAAATATAAAGATGTAT
55373 ATA
1 ATA
55376 ACATTGCATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 22 0.92
25 2 0.08
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (24 bp):
ATATATATAAATATAAAGATGTAT
Found at i:55424 original size:17 final size:17
Alignment explanation
Indices: 55402--55453 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
55392 AAACCGTATA
55402 TATAAAAAATATATATG
1 TATAAAAAATATATATG
* *
55419 TATAAAATATACA-ATG
1 TATAAAAAATATATATG
*
55435 TA-AAAAAGATATGTATG
1 TATAAAAA-ATATATATG
55452 TA
1 TA
55454 AAAGTACCAA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
15 4 0.14
16 8 0.29
17 16 0.57
ACGTcount: A:0.56, C:0.02, G:0.10, T:0.33
Consensus pattern (17 bp):
TATAAAAAATATATATG
Found at i:61127 original size:81 final size:81
Alignment explanation
Indices: 60992--61154 Score: 317
Period size: 81 Copynumber: 2.0 Consensus size: 81
60982 GTTTCGGTAG
60992 AAGTATACTTATATCGGTAGAATCCTTTTCCCAAAGTGACCGTTGGAGTCGTTGTACTGGTAGAT
1 AAGTATACTTATATCGGTAGAATCCTTTTCCCAAAGTGACCGTTGGAGTCGTTGTACTGGTAGAT
61057 CCAACCTTGTATCGGT
66 CCAACCTTGTATCGGT
*
61073 AAGTATACTTATATCGGTAGAATCCTTTTCCCAAAGTGACCGTTTGAGTCGTTGTACTGGTAGAT
1 AAGTATACTTATATCGGTAGAATCCTTTTCCCAAAGTGACCGTTGGAGTCGTTGTACTGGTAGAT
61138 CCAACCTTGTATCGGT
66 CCAACCTTGTATCGGT
61154 A
1 A
61155 TAACTCTGAG
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (81 bp):
AAGTATACTTATATCGGTAGAATCCTTTTCCCAAAGTGACCGTTGGAGTCGTTGTACTGGTAGAT
CCAACCTTGTATCGGT
Found at i:62997 original size:11 final size:12
Alignment explanation
Indices: 62973--63002 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
62963 CAATCCAAAT
62973 TTTATTATTTTA
1 TTTATTATTTTA
62985 TTTATTA-TTTA
1 TTTATTATTTTA
62996 TTTATTA
1 TTTATTA
63003 AATAAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (12 bp):
TTTATTATTTTA
Found at i:64314 original size:30 final size:29
Alignment explanation
Indices: 64241--64394 Score: 159
Period size: 30 Copynumber: 5.2 Consensus size: 29
64231 AATTATTTTG
*
64241 TTGACCCTAAAGTTTTC-AAAAATTTAAAT
1 TTGACCCTAAA-TTTTCTAAAAATTCAAAT
* *
64270 TTGACCCCAAATTTTCTAAAACTTCAAAT
1 TTGACCCTAAATTTTCTAAAAATTCAAAT
* * *
64299 TTCACCCTTAAATTTTATAAAAGTTCAAAT
1 TTGACCC-TAAATTTTCTAAAAATTCAAAT
*
64329 TTGACCCCTAAATTTTCCAAAAATTCAAAT
1 TTGA-CCCTAAATTTTCTAAAAATTCAAAT
* * *
64359 TTAACCCCTAAAGTTTT-AAAAAATTAAAAT
1 TTGA-CCCTAAA-TTTTCTAAAAATTCAAAT
64389 TTGACC
1 TTGACC
64395 ATGTTTTAAT
Statistics
Matches: 106, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
28 5 0.05
29 28 0.26
30 66 0.62
31 7 0.07
ACGTcount: A:0.41, C:0.19, G:0.05, T:0.36
Consensus pattern (29 bp):
TTGACCCTAAATTTTCTAAAAATTCAAAT
Found at i:64356 original size:60 final size:59
Alignment explanation
Indices: 64245--64394 Score: 203
Period size: 60 Copynumber: 2.5 Consensus size: 59
64235 ATTTTGTTGA
* * * * *
64245 CCCTAAAGTTTTCAAAAATTTAAATTTGACCCCAAATTTTCTAAAACTTCAAATTTCAC
1 CCCTAAAGTTTTAAAAAATTAAAATTTGACCCCAAATTTTCCAAAAATTCAAATTTAAC
* * *
64304 CCTTAAA-TTTTATAAAAGTTCAAATTTGACCCCTAAATTTTCCAAAAATTCAAATTTAAC
1 CCCTAAAGTTTTA-AAAAATTAAAATTTGACCCC-AAATTTTCCAAAAATTCAAATTTAAC
64364 CCCTAAAGTTTTAAAAAATTAAAATTTGACC
1 CCCTAAAGTTTTAAAAAATTAAAATTTGACC
64395 ATGTTTTAAT
Statistics
Matches: 78, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
58 4 0.05
59 24 0.31
60 45 0.58
61 5 0.06
ACGTcount: A:0.41, C:0.19, G:0.04, T:0.35
Consensus pattern (59 bp):
CCCTAAAGTTTTAAAAAATTAAAATTTGACCCCAAATTTTCCAAAAATTCAAATTTAAC
Found at i:77193 original size:37 final size:37
Alignment explanation
Indices: 77143--77218 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
77133 ACCTCAAAAG
77143 TAAGCTTGCTGATGCCCCTATGTGTTGCCATTGGCTA
1 TAAGCTTGCTGATGCCCCTATGTGTTGCCATTGGCTA
77180 TAAGCTTGCTGATGCCCCTATGTGTTGCCATTGGCTA
1 TAAGCTTGCTGATGCCCCTATGTGTTGCCATTGGCTA
77217 TA
1 TA
77219 GAGTTTAAGG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.36
Consensus pattern (37 bp):
TAAGCTTGCTGATGCCCCTATGTGTTGCCATTGGCTA
Found at i:80434 original size:21 final size:19
Alignment explanation
Indices: 80405--80443 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
80395 GACATTTTTT
*
80405 AAAATTATATTTATATATTAA
1 AAAAATATA-TTAT-TATTAA
80426 AAAAATATATTATTATTA
1 AAAAATATATTATTATTA
80444 TATTAGTGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 4 0.24
21 8 0.47
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
AAAAATATATTATTATTAA
Found at i:80439 original size:24 final size:22
Alignment explanation
Indices: 80405--80448 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 22
80395 GACATTTTTT
80405 AAAATTATATT-TATATATTAAA
1 AAAATTATATTAT-TATATTAAA
80427 AAAATATATTATTATTATATTA
1 AAAAT-TA-TATTATTATATTA
80449 GTGGTGCGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 5 0.26
23 2 0.11
24 11 0.58
25 1 0.05
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAAATTATATTATTATATTAAA
Found at i:80770 original size:16 final size:14
Alignment explanation
Indices: 80751--80786 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
80741 TCTCTTCTCT
80751 TCTCTCCCGTTTGG
1 TCTCTCCCGTTTGG
80765 TCTCTCCCGTTTGG
1 TCTCTCCCGTTTGG
80779 TCTCTCCC
1 TCTCTCCC
80787 TTCCCCTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.00, C:0.42, G:0.17, T:0.42
Consensus pattern (14 bp):
TCTCTCCCGTTTGG
Found at i:88439 original size:9 final size:9
Alignment explanation
Indices: 88425--88484 Score: 53
Period size: 9 Copynumber: 7.2 Consensus size: 9
88415 CATATCAGCA
88425 ATTAAAATT
1 ATTAAAATT
88434 ATTAAAATT
1 ATTAAAATT
88443 ATT----TT
1 ATTAAAATT
88448 -TTAAAA-T
1 ATTAAAATT
88455 A-TAAAATT
1 ATTAAAATT
88463 ATTAAAATT
1 ATTAAAATT
88472 ATTTTAAAATT
1 A--TTAAAATT
88483 AT
1 AT
88485 ACTACTCATC
Statistics
Matches: 42, Mismatches: 0, Indels: 18
0.70 0.00 0.30
Matches are distributed among these distances:
4 2 0.05
5 2 0.05
7 6 0.14
8 2 0.05
9 21 0.50
11 9 0.21
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (9 bp):
ATTAAAATT
Found at i:88461 original size:20 final size:22
Alignment explanation
Indices: 88426--88465 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
88416 ATATCAGCAA
88426 TTAAAATTATTAAAATTATTTT
1 TTAAAATTATTAAAATTATTTT
88448 TTAAAA-TA-TAAAATTATT
1 TTAAAATTATTAAAATTATT
88466 AAAATTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.56
21 2 0.11
22 6 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
TTAAAATTATTAAAATTATTTT
Found at i:88587 original size:15 final size:16
Alignment explanation
Indices: 88560--88589 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
88550 GATGCCTTCT
88560 TTGATTCCTTCCTCTG
1 TTGATTCCTTCCTCTG
88576 TTGATT-CTTCCTCT
1 TTGATTCCTTCCTCT
88590 TCAGTCCCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.07, C:0.30, G:0.10, T:0.53
Consensus pattern (16 bp):
TTGATTCCTTCCTCTG
Found at i:89460 original size:20 final size:20
Alignment explanation
Indices: 89435--89501 Score: 61
Period size: 20 Copynumber: 3.4 Consensus size: 20
89425 GATGATAATT
89435 ATAATTTTAAAATAATTTT--A
1 ATAATTTT--AATAATTTTAAA
89455 ATAATTTT-AT-ATTTTAAAAA
1 ATAATTTTAATAATTTT--AAA
89475 ATAATTTTAATAATTTTAAA
1 ATAATTTTAATAATTTTAAA
*
89495 ATTATTT
1 ATAATTT
89502 ATTGACGTGA
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
16 5 0.12
17 2 0.05
20 26 0.65
21 2 0.05
22 5 0.12
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
ATAATTTTAATAATTTTAAA
Found at i:90100 original size:2 final size:2
Alignment explanation
Indices: 90093--90121 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
90083 CTTTATATGC
90093 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
90122 TATTTACAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:90652 original size:6 final size:6
Alignment explanation
Indices: 90641--90671 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
90631 GAATAAGATG
90641 GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA G
1 GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA G
90672 GGAGAAGGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.68, T:0.00
Consensus pattern (6 bp):
GAGGGA
Found at i:90672 original size:16 final size:16
Alignment explanation
Indices: 90641--90686 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 16
90631 GAATAAGATG
90641 GAGGGAGAGGGAGAGGGA
1 GAGGGAGA-GG-GAGGGA
90659 GAGGGAGAGGGAGGGA
1 GAGGGAGAGGGAGGGA
90675 GAAGGGA-AGGGA
1 G-AGGGAGAGGGA
90687 AGTTTTTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
16 12 0.44
17 7 0.26
18 8 0.30
ACGTcount: A:0.35, C:0.00, G:0.65, T:0.00
Consensus pattern (16 bp):
GAGGGAGAGGGAGGGA
Found at i:93999 original size:27 final size:27
Alignment explanation
Indices: 93929--94002 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
93919 ATTGAAAGAA
*
93929 AAAGAAAACGAGAGAAAATATAATGAG
1 AAAGAGAACGAGAGAAAATATAATGAG
* * *
93956 AAAGAGAATGGAAAGAAAA-ATAATTGTG
1 AAAGAGAA-CGAGAGAAAATATAA-TGAG
93984 TAAAGAGAA-GAGAGAAAAT
1 -AAAGAGAACGAGAGAAAAT
94003 CGAAAAAGAA
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
27 19 0.50
28 11 0.29
29 8 0.21
ACGTcount: A:0.61, C:0.01, G:0.24, T:0.14
Consensus pattern (27 bp):
AAAGAGAACGAGAGAAAATATAATGAG
Found at i:95539 original size:9 final size:8
Alignment explanation
Indices: 95520--95550 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
95510 GTGATTTTGC
95520 AAAAAAT-
1 AAAAAATA
95527 AAAAAATA
1 AAAAAATA
95535 AAAAAATA
1 AAAAAATA
95543 AAAAAATA
1 AAAAAATA
95551 CAAGTAGCGT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 7 0.30
8 16 0.70
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (8 bp):
AAAAAATA
Found at i:95897 original size:30 final size:30
Alignment explanation
Indices: 95863--95982 Score: 145
Period size: 30 Copynumber: 4.0 Consensus size: 30
95853 AATGGGGTAG
* *
95863 AATCAAAGTTTTGGAAAGTTCGAGGGTCAA
1 AATCAAATTTTTAGAAAGTTCGAGGGTCAA
95893 AATCAAATTTTTAGAAAGTTC-AGGGGTCAA
1 AATCAAATTTTTAGAAAGTTCGA-GGGTCAA
*
95923 AATCAAATTTTTAGAAAGTTCAAGGGTCAA
1 AATCAAATTTTTAGAAAGTTCGAGGGTCAA
* * * *
95953 AA-CTAAATTTTTGGGAAGTTTGGGGGTCAA
1 AATC-AAATTTTTAGAAAGTTCGAGGGTCAA
95983 TTCCAAATTT
Statistics
Matches: 80, Mismatches: 7, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
29 2 0.03
30 77 0.96
31 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.30
Consensus pattern (30 bp):
AATCAAATTTTTAGAAAGTTCGAGGGTCAA
Found at i:95994 original size:60 final size:60
Alignment explanation
Indices: 95863--95982 Score: 161
Period size: 60 Copynumber: 2.0 Consensus size: 60
95853 AATGGGGTAG
* * *
95863 AATCAAAGTTTTGGAAAGTTCGAGGGTCAAAATCAAATTTTTAGAAAGTTCAGGGGTCAA
1 AATCAAATTTTTAGAAAGTTCAAGGGTCAAAATCAAATTTTTAGAAAGTTCAGGGGTCAA
* * **
95923 AATCAAATTTTTAGAAAGTTCAAGGGTCAAAA-CTAAATTTTTGGGAAGTTTGGGGGTCAA
1 AATCAAATTTTTAGAAAGTTCAAGGGTCAAAATC-AAATTTTTAGAAAGTTCAGGGGTCAA
95983 TTCCAAATTT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
59 1 0.02
60 51 0.98
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.30
Consensus pattern (60 bp):
AATCAAATTTTTAGAAAGTTCAAGGGTCAAAATCAAATTTTTAGAAAGTTCAGGGGTCAA
Found at i:97916 original size:38 final size:39
Alignment explanation
Indices: 97811--98002 Score: 194
Period size: 38 Copynumber: 4.9 Consensus size: 39
97801 TGAGATGTTA
* *
97811 GCTTCAATCTGCCCCATGATTGGGGGTAAGAGATTGAATT
1 GCTTCAATCTGCCTCATGA-TCGGGGTAAGAGATTGAATT
** *
97851 GTCTTCAATCTGCCCTC-TGATTAGGGTAAGAGATTGGA-T
1 G-CTTCAATCTG-CCTCATGATCGGGGTAAGAGATTGAATT
*
97890 GCTTCAATCTGCCACATGATCGGGGTAAGAGATTGAATT
1 GCTTCAATCTGCCTCATGATCGGGGTAAGAGATTGAATT
* * * ***
97929 GTCTTTAATCTGTCTTC-TAATTAAGGTAAGAGATTGAA-T
1 G-CTTCAATCTG-CCTCATGATCGGGGTAAGAGATTGAATT
*
97968 GCTTCAATCTGCCTCATGATCGAGGTAAGAGATTG
1 GCTTCAATCTGCCTCATGATCGGGGTAAGAGATTG
98003 GTGTATAGCT
Statistics
Matches: 125, Mismatches: 20, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
37 6 0.05
38 53 0.42
39 6 0.05
40 42 0.34
41 15 0.12
42 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (39 bp):
GCTTCAATCTGCCTCATGATCGGGGTAAGAGATTGAATT
Found at i:97931 original size:78 final size:78
Alignment explanation
Indices: 97811--98002 Score: 285
Period size: 78 Copynumber: 2.4 Consensus size: 78
97801 TGAGATGTTA
* * * *
97811 GCTTCAATCTGCCCCATGATTGGGGGTAAGAGATTGAATTGTCTTCAATCTGCCCTCTGATTAGG
1 GCTTCAATCTGCCACATGA-TCGGGGTAAGAGATTGAATTGTCTTCAATCTGCCCTCTAATTAAG
*
97876 GTAAGAGATTGGAT
65 GTAAGAGATTGAAT
* * *
97890 GCTTCAATCTGCCACATGATCGGGGTAAGAGATTGAATTGTCTTTAATCTGTCTTCTAATTAAGG
1 GCTTCAATCTGCCACATGATCGGGGTAAGAGATTGAATTGTCTTCAATCTGCCCTCTAATTAAGG
97955 TAAGAGATTGAAT
66 TAAGAGATTGAAT
* *
97968 GCTTCAATCTGCCTCATGATCGAGGTAAGAGATTG
1 GCTTCAATCTGCCACATGATCGGGGTAAGAGATTG
98003 GTGTATAGCT
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
78 85 0.83
79 18 0.17
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (78 bp):
GCTTCAATCTGCCACATGATCGGGGTAAGAGATTGAATTGTCTTCAATCTGCCCTCTAATTAAGG
TAAGAGATTGAAT
Found at i:98422 original size:99 final size:99
Alignment explanation
Indices: 98320--99016 Score: 720
Period size: 99 Copynumber: 7.1 Consensus size: 99
98310 GCTTCGATCT
* * *
98320 TTCCCATCACATCTTCTAAGGTATCGGGTTCAACGTTGC-GCCTTTAACCTTTCCCTTCATATCT
1 TTCCCATCACATCTTCTAAGGTACCGGGTTCACCGTTGCGGCC-TCAACCTTTCCCTTCATATCT
* * *
98384 TCATTGTACTAGATTCGTCGTTGCGGCCCCAATCT
65 TCATGGTACTAGATTCGTCGTTGCGGCCTCAATCC
* * *** * * * *
98419 TTCCCATCACATCTTTTAAGATACCGGGTTCGTTGTCGCTGCCTCAACCTTTTCCTTCATATCGT
1 TTCCCATCACATCTTCTAAGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCATATCTT
* * * *
98484 CATGGTACTAGTTTTGTCATTGCGGTCTCAATCC
66 CATGGTACTAGATTCGTCGTTGCGGCCTCAATCC
* * * * * *
98518 TTCCCATCACATCTTCTAAGGTATCAGGTTCGCCATTGCAGCCTCAACCTTTTCCTTCATATCTT
1 TTCCCATCACATCTTCTAAGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCATATCTT
* ** * *
98583 CATGGTACCAGATTCACCGTTGCGGTCTCATTCC
66 CATGGTACTAGATTCGTCGTTGCGGCCTCAATCC
* * * *
98617 TTCCCATCATATCTTTTAAGGTACCGGGTTCGCTGTTGCGGCCTCAACCTTTCCCTTCATATCTT
1 TTCCCATCACATCTTCTAAGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCATATCTT
** **
98682 CATGGTACTAGATTTTTCGTTGTAGCCTCAATCC
66 CATGGTACTAGATTCGTCGTTGCGGCCTCAATCC
* * *
98716 TTACCATCACATCTTCTAAGGTACCGAGTTCACCGTTGCGGCCTCAACCTTTCCCTTAATATCTT
1 TTCCCATCACATCTTCTAAGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCATATCTT
* * * ** *
98781 CATGGTTCCAAATTCGTCGTTATGACCTCAATCC
66 CATGGTACTAGATTCGTCGTTGCGGCCTCAATCC
* * *
98815 TTCCCATCACATCTTCTAAGGTACCGAGTTCACCGTTGCGGGCTCAACCTTTCCCTTAATATCTT
1 TTCCCATCACATCTTCTAAGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCATATCTT
* * * ** * *
98880 CATGGTTCCAAATTCGTCGTTATGACGTCAATCC
66 CATGGTACTAGATTCGTCGTTGCGGCCTCAATCC
* * * * * * * **
98914 TTCCCATCACATCTTTTATA-GTATCGGGTTCGCCGTTGGGGCCTTAACCTCTCCATTTGTATCT
1 TTCCCATCACATCTTCTA-AGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCATATCT
*
98978 TCAGGGTA-TCAGATTCG-CTGTTGCGGCCTCAAT-C
65 TCATGGTACT-AGATTCGTC-GTTGCGGCCTCAATCC
99012 TTCCC
1 TTCCC
99017 TTTCAAACCT
Statistics
Matches: 507, Mismatches: 87, Indels: 9
0.84 0.14 0.01
Matches are distributed among these distances:
98 7 0.01
99 496 0.98
100 4 0.01
ACGTcount: A:0.19, C:0.30, G:0.16, T:0.36
Consensus pattern (99 bp):
TTCCCATCACATCTTCTAAGGTACCGGGTTCACCGTTGCGGCCTCAACCTTTCCCTTCATATCTT
CATGGTACTAGATTCGTCGTTGCGGCCTCAATCC
Found at i:98582 original size:50 final size:49
Alignment explanation
Indices: 98289--98881 Score: 246
Period size: 50 Copynumber: 12.0 Consensus size: 49
98279 TTATTTCTAG
* * * * * * * *
98289 GGTACAAGGTTCGCCGTTGCAGCTTCGATCTTTCCCATCACATCTTCTAA
1 GGTACCAGGTTCGCCATTGCGGCCTCAACCTTTCCCTTCATATCTTC-AA
* * ** * * *
98339 GGTATCGGGTTCAACGTTGC-GCCTTTAACCTTTCCCTTCATATCTTCAT
1 GGTACCAGGTTCGCCATTGCGGCC-TCAACCTTTCCCTTCATATCTTCAA
* * * * * * * * * *
98388 TGTACTAGATTCGTCGTTGCGGCCCCAATCTTTCCCATCACATCTTTTAA
1 GGTACCAGGTTCGCCATTGCGGCCTCAACCTTTCCCTTCATATC-TTCAA
* * *** * * * * *
98438 GATACCGGGTTCGTTGTCGCTGCCTCAACCTTTTCCTTCATATCGTCAT
1 GGTACCAGGTTCGCCATTGCGGCCTCAACCTTTCCCTTCATATCTTCAA
* * * * * * *
98487 GGTACTAGTTTTGTCATTGCGGTCTCAATCC-TTCCCATCACATCTTCTAA
1 GGTACCAGGTTCGCCATTGCGGCCTCAA-CCTTTCCCTTCATATCTTC-AA
* * * *
98537 GGTATCAGGTTCGCCATTGCAGCCTCAACCTTTTCCTTCATATCTTCAT
1 GGTACCAGGTTCGCCATTGCGGCCTCAACCTTTCCCTTCATATCTTCAA
* * * * * * *
98586 GGTACCAGATTCACCGTTGCGGTCTCATTCC-TTCCCATCATATCTTTTAA
1 GGTACCAGGTTCGCCATTGCGGCCTCA-ACCTTTCCCTTCATATC-TTCAA
* ** *
98636 GGTACCGGGTTCGCTGTTGCGGCCTCAACCTTTCCCTTCATATCTTCAT
1 GGTACCAGGTTCGCCATTGCGGCCTCAACCTTTCCCTTCATATCTTCAA
* * *** * ** * * *
98685 GGTACTAGATTTTTCGTTGTAGCCTCAATCC-TTACCATCACATCTTCTAA
1 GGTACCAGGTTCGCCATTGCGGCCTCAA-CCTTTCCCTTCATATCTTC-AA
* * * *
98735 GGTACC-GAGTTCACCGTTGCGGCCTCAACCTTTCCCTTAATATCTTCAT
1 GGTACCAG-GTTCGCCATTGCGGCCTCAACCTTTCCCTTCATATCTTCAA
* ** * * ** * * *
98784 GGTTCCAAATTCGTCGTTATGACCTCAATCC-TTCCCATCACATCTTCTAA
1 GGTACCAGGTTCGCCATTGCGGCCTCAA-CCTTTCCCTTCATATCTTC-AA
* * * *
98834 GGTACC-GAGTTCACCGTTGCGGGCTCAACCTTTCCCTTAATATCTTCA
1 GGTACCAG-GTTCGCCATTGCGGCCTCAACCTTTCCCTTCATATCTTCA
98882 TGGTTCCAAA
Statistics
Matches: 388, Mismatches: 137, Indels: 37
0.69 0.24 0.07
Matches are distributed among these distances:
49 174 0.45
50 214 0.55
ACGTcount: A:0.19, C:0.30, G:0.16, T:0.35
Consensus pattern (49 bp):
GGTACCAGGTTCGCCATTGCGGCCTCAACCTTTCCCTTCATATCTTCAA
Found at i:98819 original size:49 final size:49
Alignment explanation
Indices: 98757--98915 Score: 158
Period size: 49 Copynumber: 3.2 Consensus size: 49
98747 ACCGTTGCGG
98757 CCTCAACCTTTCCCTTAATATCTTCATGGTTCCAAATTCGTCGTTATGA
1 CCTCAACCTTTCCCTTAATATCTTCATGGTTCCAAATTCGTCGTTATGA
* * * * * * * ** ** *
98806 CCTCAATCC-TTCCCATCACATCTTCTAAGGTACCGAGTTCACCGTTGCGG
1 CCTCAA-CCTTTCCCTTAATATCTTC-ATGGTTCCAAATTCGTCGTTATGA
*
98856 GCTCAACCTTTCCCTTAATATCTTCATGGTTCCAAATTCGTCGTTATGA
1 CCTCAACCTTTCCCTTAATATCTTCATGGTTCCAAATTCGTCGTTATGA
*
98905 CGTCAATCCTT
1 CCTCAA-CCTT
98916 CCCATCACAT
Statistics
Matches: 79, Mismatches: 27, Indels: 7
0.70 0.24 0.06
Matches are distributed among these distances:
49 40 0.51
50 39 0.49
ACGTcount: A:0.21, C:0.31, G:0.13, T:0.35
Consensus pattern (49 bp):
CCTCAACCTTTCCCTTAATATCTTCATGGTTCCAAATTCGTCGTTATGA
Found at i:108022 original size:21 final size:22
Alignment explanation
Indices: 107991--108031 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
107981 TATTTGCTTG
*
107991 GAAAATGAAATAAAATATAAAA
1 GAAAATGAAATAAAAAATAAAA
108013 GAAAA-GAAATAAAAAATAA
1 GAAAATGAAATAAAAAATAA
108032 GTGAATATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.15
Consensus pattern (22 bp):
GAAAATGAAATAAAAAATAAAA
Found at i:111881 original size:42 final size:42
Alignment explanation
Indices: 111811--111985 Score: 158
Period size: 42 Copynumber: 4.2 Consensus size: 42
111801 GCCTTCTTTT
* * *
111811 TTTAAAC--AATCTTATGCTC-TACCAAGACATAAGTCTTCC
1 TTTAAACATAATCTCATGCTCATACCGAGACATGAGTCTTCC
*
111850 TTTAAACATAGTCTCATGCTCATACCGAGACATGAGTCTTCC
1 TTTAAACATAATCTCATGCTCATACCGAGACATGAGTCTTCC
* * * * *
111892 TTTAAATATAATCTTATGCTCATCCCGAGTCACGAGTCTTCC
1 TTTAAACATAATCTCATGCTCATACCGAGACATGAGTCTTCC
* * * * ****
111934 ATTATACATAATCTCACGATTGCCCCGAGACATGAGTCTTCCC
1 TTTAAACATAATCTCATGCTCATACCGAGACATGAGTCTT-CC
*
111977 TTTATACAT
1 TTTAAACAT
111986 CAAGTGATAC
Statistics
Matches: 110, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
39 7 0.06
41 10 0.09
42 83 0.75
43 10 0.09
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.33
Consensus pattern (42 bp):
TTTAAACATAATCTCATGCTCATACCGAGACATGAGTCTTCC
Found at i:114915 original size:30 final size:30
Alignment explanation
Indices: 114869--114933 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 30
114859 AGAACACCGT
*
114869 CACACAACAAACATGTAGCACAAATAGAAG
1 CACACAACAAACATGTAGCACAAATAGAAA
* * * **
114899 CACACAGCAAATATGTATCACGGATAGAAA
1 CACACAACAAACATGTAGCACAAATAGAAA
114929 CACAC
1 CACAC
114934 CTCAAATGGA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.49, C:0.25, G:0.14, T:0.12
Consensus pattern (30 bp):
CACACAACAAACATGTAGCACAAATAGAAA
Found at i:116732 original size:37 final size:35
Alignment explanation
Indices: 116665--116739 Score: 89
Period size: 36 Copynumber: 2.1 Consensus size: 35
116655 AATTTACATC
116665 AAAATCCAAAAATAATCTAATAACACAATAATATGA
1 AAAATCCAAAAATAATCTAATAACACAATAA-ATGA
* * *
116701 AAAATCCCAAAATAATTCATAATGA-ATAATAAATGA
1 AAAATCCAAAAATAA-TC-TAATAACACAATAAATGA
116737 AAA
1 AAA
116740 TGATTAAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 21 0.62
37 8 0.24
38 5 0.15
ACGTcount: A:0.61, C:0.12, G:0.04, T:0.23
Consensus pattern (35 bp):
AAAATCCAAAAATAATCTAATAACACAATAAATGA
Found at i:118255 original size:33 final size:31
Alignment explanation
Indices: 118213--118291 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
118203 ATGAATACCC
*
118213 ATGGATATTTGACTATTATAAGATTGAATGAAA
1 ATGGTTATTTGAC-A-TATAAGATTGAATGAAA
* *
118246 ATGGTTATTTTACATGTAAGATTGAATGAAA
1 ATGGTTATTTGACATATAAGATTGAATGAAA
*
118277 ATGGTTATTTTACAT
1 ATGGTTATTTGACAT
118292 GTTTTGGCTC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
31 31 0.72
32 1 0.02
33 11 0.26
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.41
Consensus pattern (31 bp):
ATGGTTATTTGACATATAAGATTGAATGAAA
Found at i:118269 original size:31 final size:31
Alignment explanation
Indices: 118231--118293 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
118221 TTGACTATTA
118231 TAAGATTGAATGAAAATGGTTATTTTACATG
1 TAAGATTGAATGAAAATGGTTATTTTACATG
118262 TAAGATTGAATGAAAATGGTTATTTTACATG
1 TAAGATTGAATGAAAATGGTTATTTTACATG
118293 T
1 T
118294 TTTGGCTCTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.38, C:0.03, G:0.19, T:0.40
Consensus pattern (31 bp):
TAAGATTGAATGAAAATGGTTATTTTACATG
Found at i:118692 original size:42 final size:42
Alignment explanation
Indices: 118587--118764 Score: 142
Period size: 42 Copynumber: 4.2 Consensus size: 42
118577 TGATGTATAA
*** * * * * *
118587 AAAGGAAGACTCATGTCTCGGGTTGAGCATAAGGATTTGTATG
1 AAAGGAAGACTCATGTCTCGAAATGAGAATGAGAATATG-ATT
* * * * *
118630 AATGGAAGACTCGTGACTCGAAATTAGCAGTGA-AATATGATT
1 AAAGGAAGACTCATGTCTCGAAATGAG-AATGAGAATATGATT
* * *
118672 AAAGGAAGACTTATGTCTCGAGATGAGAATGAGATTATGATT
1 AAAGGAAGACTCATGTCTCGAAATGAGAATGAGAATATGATT
* ** *
118714 AAAGGAAGACTCATGTGTCGGGATGAGAATGAGATTATGATT
1 AAAGGAAGACTCATGTCTCGAAATGAGAATGAGAATATGATT
*
118756 GAAGGAAGA
1 AAAGGAAGA
118765 ATGAGAATGA
Statistics
Matches: 108, Mismatches: 25, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
41 4 0.04
42 78 0.72
43 24 0.22
44 2 0.02
ACGTcount: A:0.37, C:0.09, G:0.29, T:0.26
Consensus pattern (42 bp):
AAAGGAAGACTCATGTCTCGAAATGAGAATGAGAATATGATT
Found at i:118750 original size:36 final size:39
Alignment explanation
Indices: 118665--118847 Score: 125
Period size: 42 Copynumber: 4.7 Consensus size: 39
118655 AGCAGTGAAA
*
118665 TATGATTAAAGGAAGACTTATGTCTCGAGATGAGAATGAG
1 TATGATTAAAGGAAGACTCATGTCTCGAGATGAGAAT-AG
* *
118705 ATTATGATTAAAGGAAGACTCATGTGTCGGGATGAGAATGAG
1 --TATGATTAAAGGAAGACTCATGTCTCGAGATGAGAAT-AG
* *
118747 ATTATGATTGAAGGAAGA---ATG---AGA-ATGAG-AT--
1 --TATGATTAAAGGAAGACTCATGTCTCGAGATGAGAATAG
* *
118778 TATGATTAAAGGAAGACTTATGTCTCGGGATGAGAATGAG
1 TATGATTAAAGGAAGACTCATGTCTCGAGATGAGAAT-AG
* * *
118818 AATATGATTAATGGAAGACTTATGCCTCGA
1 --TATGATTAAAGGAAGACTCATGTCTCGA
118848 TAAAGCATAA
Statistics
Matches: 116, Mismatches: 12, Indels: 26
0.75 0.08 0.17
Matches are distributed among these distances:
29 15 0.13
32 3 0.03
34 2 0.02
35 6 0.05
36 6 0.05
37 2 0.02
39 3 0.03
42 79 0.68
ACGTcount: A:0.38, C:0.07, G:0.28, T:0.27
Consensus pattern (39 bp):
TATGATTAAAGGAAGACTCATGTCTCGAGATGAGAATAG
Found at i:118777 original size:71 final size:71
Alignment explanation
Indices: 118694--118835 Score: 241
Period size: 71 Copynumber: 2.0 Consensus size: 71
118684 ATGTCTCGAG
* *
118694 ATGAGAATGAGATTATGATTAAAGGAAGACTCATGTGTCGGGATGAGAATGAGATTATGATTGAA
1 ATGAGAATGAGATTATGATTAAAGGAAGACTCATGTCTCGGGATGAGAATGAGAATATGATT-AA
118759 -GGAAGA
65 TGGAAGA
*
118765 ATGAGAATGAGATTATGATTAAAGGAAGACTTATGTCTCGGGATGAGAATGAGAATATGATTAAT
1 ATGAGAATGAGATTATGATTAAAGGAAGACTCATGTCTCGGGATGAGAATGAGAATATGATTAAT
118830 GGAAGA
66 GGAAGA
118836 CTTATGCCTC
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
70 2 0.03
71 65 0.97
ACGTcount: A:0.40, C:0.04, G:0.30, T:0.26
Consensus pattern (71 bp):
ATGAGAATGAGATTATGATTAAAGGAAGACTCATGTCTCGGGATGAGAATGAGAATATGATTAAT
GGAAGA
Found at i:118778 original size:29 final size:29
Alignment explanation
Indices: 118736--118793 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
118726 ATGTGTCGGG
*
118736 ATGAGAATGAGATTATGATTGAAGGAAGA
1 ATGAGAATGAGATTATGATTAAAGGAAGA
118765 ATGAGAATGAGATTATGATTAAAGGAAGA
1 ATGAGAATGAGATTATGATTAAAGGAAGA
118794 CTTATGTCTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.29, T:0.24
Consensus pattern (29 bp):
ATGAGAATGAGATTATGATTAAAGGAAGA
Found at i:118824 original size:42 final size:42
Alignment explanation
Indices: 118765--118846 Score: 137
Period size: 42 Copynumber: 2.0 Consensus size: 42
118755 TGAAGGAAGA
* *
118765 ATGAGAATGAGATTATGATTAAAGGAAGACTTATGTCTCGGG
1 ATGAGAATGAGAATATGATTAAAGGAAGACTTATGCCTCGGG
*
118807 ATGAGAATGAGAATATGATTAATGGAAGACTTATGCCTCG
1 ATGAGAATGAGAATATGATTAAAGGAAGACTTATGCCTCG
118847 ATAAAGCATA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.37, C:0.09, G:0.27, T:0.28
Consensus pattern (42 bp):
ATGAGAATGAGAATATGATTAAAGGAAGACTTATGCCTCGGG
Found at i:128357 original size:14 final size:14
Alignment explanation
Indices: 128334--128371 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
128324 CATTTTTGCA
128334 TTTCCTTTTATCT-
1 TTTCCTTTTATCTG
*
128347 TTTCACTTTTATTTG
1 TTTC-CTTTTATCTG
128362 TTTCCTTTTA
1 TTTCCTTTTA
128372 AATTTTATGC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 4 0.18
14 14 0.64
15 4 0.18
ACGTcount: A:0.11, C:0.18, G:0.03, T:0.68
Consensus pattern (14 bp):
TTTCCTTTTATCTG
Found at i:130715 original size:17 final size:18
Alignment explanation
Indices: 130678--130719 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
130668 ACATTTTATC
* *
130678 TATTTGTCATTGCATTTT
1 TATTTGTCACTACATTTT
130696 TATTTGTCACTACA-TTT
1 TATTTGTCACTACATTTT
130713 TATTTGT
1 TATTTGT
130720 TAGTTTCTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 10 0.45
18 12 0.55
ACGTcount: A:0.19, C:0.12, G:0.10, T:0.60
Consensus pattern (18 bp):
TATTTGTCACTACATTTT
Found at i:133562 original size:31 final size:31
Alignment explanation
Indices: 133527--133588 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
133517 CAGTTATGGA
133527 GGCTTGAGACCATTAAGAGGAACCAGACTTT
1 GGCTTGAGACCATTAAGAGGAACCAGACTTT
*
133558 GGCTTGAGACCATTAAGAGGAACCTGACTTT
1 GGCTTGAGACCATTAAGAGGAACCAGACTTT
133589 AATGAGAAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (31 bp):
GGCTTGAGACCATTAAGAGGAACCAGACTTT
Found at i:135009 original size:615 final size:618
Alignment explanation
Indices: 133826--135063 Score: 1885
Period size: 615 Copynumber: 2.0 Consensus size: 618
133816 TTAATCGTTT
* *
133826 TGACCACGAAAATGCGATTGCAGTCACAGTCACTGGAAGGTACAGTGACAAGTTAAATTAACAAG
1 TGACCACGAAAATGCGAGTGCAGTCACAATCACTGGAAGGTACAGTGACAAGTTAAATTAACAAG
*
133891 TAAGACAACGGAAGTTACTTGAGGCACGAAGGAATTCTGGCCACTTGTTCTCAAATGCAAAGCAT
66 CAAGACAACGGAAGTTACTTGAGGCACGAAGGAATTCTGGCCACTTGTTCTCAAATGCAAAGCAT
* *
133956 TACTAGCACTAAAAGGTGTGGTTAATGTGAGTGTTTGAGTCTTTGATAAACAGGGAAGTCGAAAG
131 TACCAGCACTAAAAGGTGTGATTAATGTGAGTGTTTGAGTCTTTGATAAACAGGGAAGTCGAAAG
*
134021 TAGTGAGATCTCATTAAGCTTAATTACATCGACAATTTATCTATCAATTACCTTGTAGTCACATT
196 TAGTAAGATCTCATTAAGCTT-ATTACATCGACAATTTATCTATCAATTACCTTGTAGTCACATT
* *
134086 TAGTGTTTGCTAACTTATCAAGTCAGGGATCCCCCCACCTCTTTATCATTGTTTTACTTCGTTAA
260 TAATGTTTGCTAACTTATCAAGTCAGGGATCCCCCCACCTCTTTATCATTGTTTTACTTAGTTAA
* * *
134151 TTTTCTTAATTGCATTTACAAAATATCTTTAACATTCATTTCATTTTCTAGTAAATCACTCTGAC
325 TTTTCTTAATTACATTGACAAAATATCTTCAACATTCATTTCATTTTCTAGTAAATCACTCTGAC
* * * * * *
134216 ATTTTGTATTACAGTTTTACAAAAATTACGTCGACATTTTTAACTCTTTATTAGTGTAGATTTTG
390 ATTTTCTATTACAGTTTTACAAAAATTACATCAACAGTTTTAACTCTATATTAGTGCAGATTTTG
* * * *
134281 ACTTAATTGCACTGACATTATTTTTGACAATTTTTCTTATCTTAACTTCTTTTGCACTGAAAATT
455 ACTTAATTGCACTAACATTATTTCTAACAATTTTTCTTATATTAACTTCTTTTGCACTGAAAATT
* * * * *
134346 TTAGACAATAGACACTCATCCTTGTGGGATCGATATCCGATAGATTCACTTCTGTCTACTATACT
520 TTAAACAACAGACACCCATCCTCGTGGGATCAATATCCGATAGATTCACTTCTGTCTACTATACT
* * * *
134411 TGCA-TGACAGTGTATGCTTGCACATTTTTGCTG
585 TGCATTGAAAGTGTACGCTTGCAAATATTTGCTG
* * * * *
134444 TGACCACGGAAGTGTGAGTGCAGTCACAATCACTGGAAGGTGCAGTGACAAGTTAAATTAATAAG
1 TGACCACGAAAATGCGAGTGCAGTCACAATCACTGGAAGGTACAGTGACAAGTTAAATTAACAAG
* * * * *
134509 CAAGACAACGGAAGTTGCTTGTGGCACGAAGGAATTTTGGCCACTTGTTCTCGAATGTAAAGCAT
66 CAAGACAACGGAAGTTACTTGAGGCACGAAGGAATTCTGGCCACTTGTTCTCAAATGCAAAGCAT
* * * *
134574 TACCAGCACTAGAAGGTGTGATTAATGTGAGTTTTTGAGTCTTTGATAAATATGGAAGTCGAAAG
131 TACCAGCACTAAAAGGTGTGATTAATGTGAGTGTTTGAGTCTTTGATAAACAGGGAAGTCGAAAG
134639 TAGTAAGATCTCATTAAGC-T-TTACGA-CGACAATTTATCTATCAATTACCTTGTAGTCACATT
196 TAGTAAGATCTCATTAAGCTTATTAC-ATCGACAATTTATCTATCAATTACCTTGTAGTCACATT
* *
134701 TAATGTTTG-TCAACTTATCAAGTCAGGGATCCCCCCATCTCTTTATCATTGTTTTATTTAGTTA
260 TAATGTTTGCT-AACTTATCAAGTCAGGGATCCCCCCACCTCTTTATCATTGTTTTACTTAGTTA
*
134765 ATTTTCTTAATTACATTGACAAAATATCTTCAACATTCATTTCATTTTCTAGTAAATCGCTCTGA
324 ATTTTCTTAATTACATTGACAAAATATCTTCAACATTCATTTCATTTTCTAGTAAATCACTCTGA
* * * * *
134830 CATTTTCTATTGCAGTTTTACAAAAATTGCATTAACAGTTTTAACTCTATCTTTGTGCAGATTTT
389 CATTTTCTATTACAGTTTTACAAAAATTACATCAACAGTTTTAACTCTATATTAGTGCAGATTTT
** **
134895 TTCTTAATTGCACTAACATTATTTCTAACAATTTTTCTTATATTAACTTCTTTTGCACTGGCAAT
454 GACTTAATTGCACTAACATTATTTCTAACAATTTTTCTTATATTAACTTCTTTTGCACTGAAAAT
*
134960 TTTAAACAACAGACACCCATCCTCGTGGGATCAATGTCCGACT-GATTCACTTCTGTCTACTATA
519 TTTAAACAACAGACACCCATCCTCGTGGGATCAATATCCGA-TAGATTCACTTCTGTCTACTATA
135024 CTTGCATTGAAAGTGTACGCTTGCAAATATTTGCTG
583 CTTGCATTGAAAGTGTACGCTTGCAAATATTTGCTG
135060 TGAC
1 TGAC
135064 ATTCACACCG
Statistics
Matches: 559, Mismatches: 57, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
614 1 0.00
615 332 0.59
616 31 0.06
617 1 0.00
618 194 0.35
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (618 bp):
TGACCACGAAAATGCGAGTGCAGTCACAATCACTGGAAGGTACAGTGACAAGTTAAATTAACAAG
CAAGACAACGGAAGTTACTTGAGGCACGAAGGAATTCTGGCCACTTGTTCTCAAATGCAAAGCAT
TACCAGCACTAAAAGGTGTGATTAATGTGAGTGTTTGAGTCTTTGATAAACAGGGAAGTCGAAAG
TAGTAAGATCTCATTAAGCTTATTACATCGACAATTTATCTATCAATTACCTTGTAGTCACATTT
AATGTTTGCTAACTTATCAAGTCAGGGATCCCCCCACCTCTTTATCATTGTTTTACTTAGTTAAT
TTTCTTAATTACATTGACAAAATATCTTCAACATTCATTTCATTTTCTAGTAAATCACTCTGACA
TTTTCTATTACAGTTTTACAAAAATTACATCAACAGTTTTAACTCTATATTAGTGCAGATTTTGA
CTTAATTGCACTAACATTATTTCTAACAATTTTTCTTATATTAACTTCTTTTGCACTGAAAATTT
TAAACAACAGACACCCATCCTCGTGGGATCAATATCCGATAGATTCACTTCTGTCTACTATACTT
GCATTGAAAGTGTACGCTTGCAAATATTTGCTG
Found at i:136777 original size:47 final size:47
Alignment explanation
Indices: 136717--136810 Score: 170
Period size: 47 Copynumber: 2.0 Consensus size: 47
136707 TCAAAATTGA
*
136717 GTAAGCCTAAGTTGATAGGGACTAATTTGATATAAGACATTGAAGAC
1 GTAAGCCTAAGTTGATAAGGACTAATTTGATATAAGACATTGAAGAC
*
136764 GTAAGCCTAAGTTGATAAGGACTAATTTGATATACGACATTGAAGAC
1 GTAAGCCTAAGTTGATAAGGACTAATTTGATATAAGACATTGAAGAC
136811 AAGGTTCGGA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.28
Consensus pattern (47 bp):
GTAAGCCTAAGTTGATAAGGACTAATTTGATATAAGACATTGAAGAC
Found at i:138545 original size:42 final size:42
Alignment explanation
Indices: 138425--138694 Score: 314
Period size: 42 Copynumber: 6.4 Consensus size: 42
138415 ATATAAAAAA
* * *
138425 GAAGACTCATGTCTCGGGTTGAGCATGAGGATT-TG-TATAAATG
1 GAAGACTCATGTCTCGAGATGAGAATGA-GATTATGAT-TAAA-G
* * * *
138468 GAAGACTCATGACTCG-GAATGGGCATG-GAAATATGATTAAAG
1 GAAGACTCATGTCTCGAG-ATGAGAATGAG-ATTATGATTAAAG
*
138510 GAAGACTCATGTCTCGAGATGAGAATCAGATTATGATTAAAG
1 GAAGACTCATGTCTCGAGATGAGAATGAGATTATGATTAAAG
*
138552 GAAGACTCATGTCTCAAGATGAGAATGAGATTATGATTAAAG
1 GAAGACTCATGTCTCGAGATGAGAATGAGATTATGATTAAAG
* *
138594 GAAGAATCATGTCTTGAGATGAGAATGAGATTATGATTAAAG
1 GAAGACTCATGTCTCGAGATGAGAATGAGATTATGATTAAAG
* * * *
138636 GAAGACTCATGTCTAGGGATGAGACTGAGAATATGATTAAAG
1 GAAGACTCATGTCTCGAGATGAGAATGAGATTATGATTAAAG
* *
138678 GAAGACTTATGACTCGA
1 GAAGACTCATGTCTCGA
138695 TAGAGCATAA
Statistics
Matches: 198, Mismatches: 23, Indels: 13
0.85 0.10 0.06
Matches are distributed among these distances:
41 1 0.01
42 166 0.84
43 30 0.15
44 1 0.01
ACGTcount: A:0.37, C:0.10, G:0.27, T:0.26
Consensus pattern (42 bp):
GAAGACTCATGTCTCGAGATGAGAATGAGATTATGATTAAAG
Found at i:139370 original size:21 final size:21
Alignment explanation
Indices: 139346--139419 Score: 53
Period size: 21 Copynumber: 3.5 Consensus size: 21
139336 CTAGAGTTTT
139346 TAGTATCGGTAGAAGCATAAC
1 TAGTATCGGTAGAAGCATAAC
* * * *
139367 TAGTTTTGGTAGATG-TTATAC
1 TAGTATCGGTAGAAGCATA-AC
* *
139388 TTGTATCGGTAGAA-CAATCAC
1 TAGTATCGGTAGAAGC-ATAAC
*
139409 AAGTATCGGTA
1 TAGTATCGGTA
139420 AAAGTTTGCA
Statistics
Matches: 38, Mismatches: 12, Indels: 6
0.68 0.21 0.11
Matches are distributed among these distances:
20 2 0.05
21 35 0.92
22 1 0.03
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.32
Consensus pattern (21 bp):
TAGTATCGGTAGAAGCATAAC
Found at i:142719 original size:25 final size:25
Alignment explanation
Indices: 142691--142740 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
142681 TTCTTTATAG
142691 ATCTGAAAATGGTAGACAAAAATAA
1 ATCTGAAAATGGTAGACAAAAATAA
142716 ATCTGAAAATGGTAGACAAAAATAA
1 ATCTGAAAATGGTAGACAAAAATAA
142741 TCCTGTCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.56, C:0.08, G:0.16, T:0.20
Consensus pattern (25 bp):
ATCTGAAAATGGTAGACAAAAATAA
Found at i:154413 original size:54 final size:52
Alignment explanation
Indices: 154311--154413 Score: 127
Period size: 54 Copynumber: 1.9 Consensus size: 52
154301 AGTTACACGA
* *
154311 TCTGGGACACGGCTGTGTATCAAGTCAAAGAGTTACATGGACTTACACATTG
1 TCTGGGACACGGCTGTGTATCAAGTCAAAGAGTTACATCGACTAACACATTG
* * *
154363 TCTGGGACATGGCCATGTGTATCAAGTTACAGAGTTACA-CGATCTAACACA
1 TCTGGGACACGG-C-TGTGTATCAAGTCAAAGAGTTACATCGA-CTAACACA
154414 CAATTTGCAA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
52 11 0.26
53 3 0.07
54 29 0.67
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (52 bp):
TCTGGGACACGGCTGTGTATCAAGTCAAAGAGTTACATCGACTAACACATTG
Found at i:162404 original size:21 final size:19
Alignment explanation
Indices: 162370--162410 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 19
162360 AACCAAGGTT
162370 TACTCAATTCAAAACATCA
1 TACTCAATTCAAAACATCA
*
162389 TACTACAATTACAAAAGATCA
1 TACT-CAATT-CAAAACATCA
162410 T
1 T
162411 TTTAGGATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 4 0.21
20 5 0.26
21 10 0.53
ACGTcount: A:0.49, C:0.22, G:0.02, T:0.27
Consensus pattern (19 bp):
TACTCAATTCAAAACATCA
Found at i:167344 original size:25 final size:25
Alignment explanation
Indices: 167316--167383 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
167306 AAACTCTGTT
*
167316 TAGGCTCGTAAGAGCTAACTTTATC
1 TAGGCTCGTAAGAGCTAACCTTATC
**
167341 TAGGCTCACAAGAGCTAACCTTATC
1 TAGGCTCGTAAGAGCTAACCTTATC
*
167366 TAGGCTCGTATGAGCTAA
1 TAGGCTCGTAAGAGCTAA
167384 GTTCTGGAAG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (25 bp):
TAGGCTCGTAAGAGCTAACCTTATC
Found at i:185269 original size:29 final size:27
Alignment explanation
Indices: 185211--185311 Score: 87
Period size: 29 Copynumber: 3.5 Consensus size: 27
185201 TTGGAATCTG
**
185211 ATTTTAATATTTTTTAATTTGGTATTTAA
1 ATTTT-AT-TTTTTTAATTTGGTACATAA
*
185240 ATATTT-TTTTTGTTCAATTTGGTTCATAA
1 AT-TTTATTTTT-TT-AATTTGGTACATAA
185269 ATTTTACATTTTTTTAATTTGGTACATAA
1 ATTTT--ATTTTTTTAATTTGGTACATAA
*
185298 ATTTAATATTTTTT
1 ATTTTAT-TTTTTT
185312 CTTAAGTTGG
Statistics
Matches: 60, Mismatches: 5, Indels: 15
0.75 0.06 0.19
Matches are distributed among these distances:
27 6 0.10
28 12 0.20
29 32 0.53
30 5 0.08
31 5 0.08
ACGTcount: A:0.29, C:0.04, G:0.07, T:0.60
Consensus pattern (27 bp):
ATTTTATTTTTTTAATTTGGTACATAA
Found at i:185814 original size:26 final size:26
Alignment explanation
Indices: 185743--185815 Score: 94
Period size: 26 Copynumber: 2.8 Consensus size: 26
185733 AATATTTAAT
185743 AAATTTAGGTACCAAATTGAACTAAAA
1 AAATTTAGGTACCAAATT-AACTAAAA
**
185770 AAATTTA-GTCACCAAATTAGGTAAAA
1 AAATTTAGGT-ACCAAATTAACTAAAA
*
185796 AAATTTAGGTAACAAATTAA
1 AAATTTAGGTACCAAATTAA
185816 AAAAAGTACC
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
26 23 0.57
27 17 0.43
ACGTcount: A:0.52, C:0.10, G:0.11, T:0.27
Consensus pattern (26 bp):
AAATTTAGGTACCAAATTAACTAAAA
Found at i:186091 original size:18 final size:16
Alignment explanation
Indices: 186069--186115 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 16
186059 CAATAACAAT
186069 TAAAATAATTAAAAAA
1 TAAAATAATTAAAAAA
186085 TAAAA-AA-TAATGAAAA
1 TAAAATAATTAA--AAAA
186101 TAAAATAATTAAAAA
1 TAAAATAATTAAAAA
186116 TTAACACACT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
14 3 0.11
15 2 0.07
16 17 0.63
17 2 0.07
18 3 0.11
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (16 bp):
TAAAATAATTAAAAAA
Found at i:194489 original size:112 final size:113
Alignment explanation
Indices: 194286--194508 Score: 333
Period size: 112 Copynumber: 2.0 Consensus size: 113
194276 GAATTGAGGA
* * *
194286 TCCACTCCTCACTTACTTTAGAGTTGTTAATAGAAACAACTAAAAGTTCACCATCACTGTAGTCT
1 TCCACTCCTCACTTACTTTAGAGTTGTCAACAGAAACAACTAAAAGATCACCATCACTGTAGTCT
* * * *
194351 TCTACTATATCAACTTCATCGGATTGTTCTGGTTGTTTTCCCTTTTTT
66 TCTAATACATCAACTTCATCGAATTGTTCTGGTTGCTTTCCCTTTTTT
* **
194399 TCCACTCCTCACTTACTTTAGATTTGTCAACA-AAAGCAACTAGGAGAT-ACCATCACTGTAGTC
1 TCCACTCCTCACTTACTTTAGAGTTGTCAACAGAAA-CAACTAAAAGATCACCATCACTGTAGTC
194462 TTCTAATACATCAACTTCATCGAATTGTTCTGGTTGCTTTCCCTTTT
65 TTCTAATACATCAACTTCATCGAATTGTTCTGGTTGCTTTCCCTTTT
194509 GATTCACAGC
Statistics
Matches: 99, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
112 61 0.62
113 38 0.38
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.39
Consensus pattern (113 bp):
TCCACTCCTCACTTACTTTAGAGTTGTCAACAGAAACAACTAAAAGATCACCATCACTGTAGTCT
TCTAATACATCAACTTCATCGAATTGTTCTGGTTGCTTTCCCTTTTTT
Found at i:207270 original size:66 final size:66
Alignment explanation
Indices: 207164--207365 Score: 377
Period size: 66 Copynumber: 3.1 Consensus size: 66
207154 TCTTCACGGC
*
207164 GTTCACCTTCTCAAGTCATGACAGGGTTGAGTGGTACTCAGACCATGGACTACATGAGCGGAATG
1 GTTCACCTTCTCAAGTCATGACAGGGTTGAATGGTACTCAGACCATGGACTACATGAGCGGAATG
207229 G
66 G
207230 GTTCACCTTCTCAAGTCATGACAGGGTTGAATGGTACTCAGACCATGGACTACATGAGCGGAATG
1 GTTCACCTTCTCAAGTCATGACAGGGTTGAATGGTACTCAGACCATGGACTACATGAGCGGAATG
207295 G
66 G
* *
207296 GTTCACCTTCTCAAGTCATGACAGGGTTTAATGGTAGTCAGACCATGGACTACATGAGCGGAATG
1 GTTCACCTTCTCAAGTCATGACAGGGTTGAATGGTACTCAGACCATGGACTACATGAGCGGAATG
207361 G
66 G
207362 GTTC
1 GTTC
207366 TCAATATTCT
Statistics
Matches: 133, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
66 133 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (66 bp):
GTTCACCTTCTCAAGTCATGACAGGGTTGAATGGTACTCAGACCATGGACTACATGAGCGGAATG
G
Found at i:210566 original size:14 final size:14
Alignment explanation
Indices: 210547--210582 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
210537 TGTTGTCATT
210547 TTATTATTATGTTG
1 TTATTATTATGTTG
*
210561 TTATTATTATTTTG
1 TTATTATTATGTTG
*
210575 TTGTTATT
1 TTATTATT
210583 GTTCGGGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.19, C:0.00, G:0.11, T:0.69
Consensus pattern (14 bp):
TTATTATTATGTTG
Found at i:210569 original size:17 final size:17
Alignment explanation
Indices: 210547--210582 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
210537 TGTTGTCATT
210547 TTATTATTATGTTGTTA
1 TTATTATTATGTTGTTA
*
210564 TTATTATTTTGTTGTTA
1 TTATTATTATGTTGTTA
210581 TT
1 TT
210583 GTTCGGGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.19, C:0.00, G:0.11, T:0.69
Consensus pattern (17 bp):
TTATTATTATGTTGTTA
Found at i:210758 original size:17 final size:17
Alignment explanation
Indices: 210738--210771 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
210728 ATGTTTAGTG
210738 TTTTT-AATTTATTATAT
1 TTTTTAAATTT-TTATAT
210755 TTTTTAAATTTTTATAT
1 TTTTTAAATTTTTATAT
210772 AAAAAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTAAATTTTTATAT
Found at i:218260 original size:5 final size:5
Alignment explanation
Indices: 218250--218279 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
218240 GTTTCTGTCA
218250 AATAT AATAT AATAT AATAT AATAT AATAT
1 AATAT AATAT AATAT AATAT AATAT AATAT
218280 TTCAAGTTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AATAT
Found at i:225319 original size:85 final size:84
Alignment explanation
Indices: 225206--225361 Score: 233
Period size: 85 Copynumber: 1.8 Consensus size: 84
225196 GACTTACACC
* * * *
225206 GGTGTAAGTCAATTTTTTTCCCTCAACCCTCTTGTTGAG-TGTGTCAAGCGAGCAAATTTGAGGG
1 GGTGTAAGTAAATTTTTTTCCATCAACCCTCCTGTTGAGCT-TGTCAAGCAAGCAAATTTGAGGG
225270 AAAAACAACTAACTTATATA
65 AAAAACAACTAACTTATATA
*
225290 GGTGTAAGTAAATTCTTTTTCCATCAACCCTCCTGTTGAGCTTGTCAAGCAAGCAAGTTTGAGGG
1 GGTGTAAGTAAATT-TTTTTCCATCAACCCTCCTGTTGAGCTTGTCAAGCAAGCAAATTTGAGGG
*
225355 GAAAACA
65 AAAAACA
225362 CACTGGTTTA
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
84 13 0.20
85 50 0.78
86 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.31
Consensus pattern (84 bp):
GGTGTAAGTAAATTTTTTTCCATCAACCCTCCTGTTGAGCTTGTCAAGCAAGCAAATTTGAGGGA
AAAACAACTAACTTATATA
Found at i:225572 original size:46 final size:45
Alignment explanation
Indices: 225495--225592 Score: 153
Period size: 46 Copynumber: 2.2 Consensus size: 45
225485 GCGCCTTAGC
*
225495 AAAT-AATATTGAAAAGAAAAGTTCAACAGGCTTCATCATTAAAG
1 AAATCAATATTGAAAAAAAAAGTTCAACAGGCTTCATCATTAAAG
* *
225539 CAATCAATATTGAAAATAAAAAGTTCAACAGGCTTCATCGTTAAAG
1 AAATCAATATTGAAAA-AAAAAGTTCAACAGGCTTCATCATTAAAG
225585 AAATCAAT
1 AAATCAAT
225593 GCAACTCCAG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 3 0.06
45 11 0.23
46 34 0.71
ACGTcount: A:0.49, C:0.13, G:0.12, T:0.26
Consensus pattern (45 bp):
AAATCAATATTGAAAAAAAAAGTTCAACAGGCTTCATCATTAAAG
Found at i:225767 original size:8 final size:8
Alignment explanation
Indices: 225754--225778 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
225744 TTGAAGCTTG
225754 AAAATGAT
1 AAAATGAT
225762 AAAATGAT
1 AAAATGAT
225770 AAAATGAT
1 AAAATGAT
225778 A
1 A
225779 GGAGCTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (8 bp):
AAAATGAT
Found at i:228406 original size:97 final size:96
Alignment explanation
Indices: 228238--228413 Score: 223
Period size: 97 Copynumber: 1.8 Consensus size: 96
228228 TTCGATTATC
** * * * * *
228238 TCGATTTGAAGAAAGGTTGCACCTAGTAAGTTAAGGCGCAATATTTCAGAATTGAAGATAAGGAA
1 TCGATTTGAAGAAAAATTGCACCCAGTAAGTTAAGGCACAATATTTCAAAATCGAAGATAAAGAA
228303 ACATTGCCTCGATTAAGGGTATTTGATTTTT
66 ACATTGCCTCGATTAAGGGTATTTGATTTTT
228334 TCGATTTGAAGAAAAAATTGCACCCAGTAAGTTAAGGCACAA-ATTTTCAAAACTCGAA-ATAAA
1 TCGATTTGAAG-AAAAATTGCACCCAGTAAGTTAAGGCACAATA-TTTCAAAA-TCGAAGATAAA
*
228397 -AGAATATTGCCTCGATT
63 GA-AACATTGCCTCGATT
228414 TTAAAGTTTT
Statistics
Matches: 68, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
96 13 0.19
97 51 0.75
98 4 0.06
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.30
Consensus pattern (96 bp):
TCGATTTGAAGAAAAATTGCACCCAGTAAGTTAAGGCACAATATTTCAAAATCGAAGATAAAGAA
ACATTGCCTCGATTAAGGGTATTTGATTTTT
Found at i:228666 original size:29 final size:28
Alignment explanation
Indices: 228632--228694 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
228622 AAATGAGACT
228632 TTTTGGATACCT-GAGGGGCAAAATGGTAA
1 TTTTGGAT-CCTCG-GGGGCAAAATGGTAA
* *
228661 TTTTGGATTCTCGGGGGTAAAATGGTAA
1 TTTTGGATCCTCGGGGGCAAAATGGTAA
228689 TTTTGG
1 TTTTGG
228695 GAAAATTAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
28 22 0.71
29 9 0.29
ACGTcount: A:0.25, C:0.08, G:0.32, T:0.35
Consensus pattern (28 bp):
TTTTGGATCCTCGGGGGCAAAATGGTAA
Found at i:228735 original size:29 final size:29
Alignment explanation
Indices: 228703--228850 Score: 88
Period size: 29 Copynumber: 5.1 Consensus size: 29
228693 GGGAAAATTA
228703 GGGGTTAAAATGGAATTTTTAGACATTCG
1 GGGGTTAAAATGGAATTTTTAGACATTCG
* * * **
228732 GGGG-TAAAAGGGTAATTTTGAGA-GTTTT
1 GGGGTTAAAATGG-AATTTTTAGACATTCG
* * * * *
228760 GAGGTCAAAAATGGAGTTTTTGGATATTCG
1 GGGGT-TAAAATGGAATTTTTAGACATTCG
* * **
228790 GGGGGT-AAATGGTAATTTTTTAAAGTTTC-
1 GGGGTTAAAATGG-AA-TTTTTAGACATTCG
* *
228819 AGGGTTAAAATGGAATTTTTGGACATTCG
1 GGGGTTAAAATGGAATTTTTAGACATTCG
228848 GGG
1 GGG
228851 TGAAATAGTA
Statistics
Matches: 82, Mismatches: 29, Indels: 16
0.65 0.23 0.13
Matches are distributed among these distances:
28 27 0.33
29 29 0.35
30 26 0.32
ACGTcount: A:0.29, C:0.05, G:0.31, T:0.35
Consensus pattern (29 bp):
GGGGTTAAAATGGAATTTTTAGACATTCG
Found at i:228771 original size:58 final size:57
Alignment explanation
Indices: 228650--229075 Score: 237
Period size: 58 Copynumber: 7.3 Consensus size: 57
228640 ACCTGAGGGG
* * * * *
228650 CAAAATGGTAA-TTTTGGA-TTCTCGGGGGTAAAATGGTAATTTTGGGAAA-ATTAGGGGT
1 CAAAATGG-AATTTTTGGACAT-TCGGGGGT-AAATGGTAATTTT-TGAAAGTTTTGAGGT
* * * *
228708 TAAAATGGAATTTTTAGACATTCGGGGGTAAAAGGGTAA-TTTTGAGAGTTTTGAGGT
1 CAAAATGGAATTTTTGGACATTCGGGGGT-AAATGGTAATTTTTGAAAGTTTTGAGGT
* * * *
228765 CAAAAATGGAGTTTTTGGATATTCGGGGGGTAAATGGTAATTTTTTAAAG-TTTCAGGGT
1 C-AAAATGGAATTTTTGGACATTC-GGGGGTAAATGGTAATTTTTGAAAGTTTTGA-GGT
* * *
228824 TAAAATGGAATTTTTGGACATTC-GGGGTGAAATAGTAATTTTTGAAAGTTTCGAGGT
1 CAAAATGGAATTTTTGGACATTCGGGGGT-AAATGGTAATTTTTGAAAGTTTTGAGGT
* ** *** * * *
228881 CAAAATGTAATTTTTGGAGGTTCGGGACAAAAAAT-ATAATTTTTGGAAGTTTCGAGGT
1 CAAAATGGAATTTTTGGACATTCGGG--GGTAAATGGTAATTTTTGAAAGTTTTGAGGT
* * * * * *
228939 CAAAATTGGATTTTTTGGA-AGTTC-GGGGTAAAAAT-ATAATTTTTGGAAGTTTCGGGGC
1 CAAAA-TGGAATTTTTGGACA-TTCGGGGGT--AAATGGTAATTTTTGAAAGTTTTGAGGT
** * * * *
228997 CAAAAATGGAAGATTTGGA-AGTTCGAGGGTAAAAAT-ATAATTTTTGGAAGTTTCGAGGT
1 C-AAAATGGAATTTTTGGACA-TTCGGGGGT--AAATGGTAATTTTTGAAAGTTTTGAGGT
*
229056 AAAAAAATGGAATTTTTGGA
1 --CAAAATGGAATTTTTGGA
229076 TAGTTTAGGG
Statistics
Matches: 298, Mismatches: 50, Indels: 38
0.77 0.13 0.10
Matches are distributed among these distances:
56 8 0.03
57 50 0.17
58 155 0.52
59 70 0.23
60 15 0.05
ACGTcount: A:0.33, C:0.05, G:0.27, T:0.35
Consensus pattern (57 bp):
CAAAATGGAATTTTTGGACATTCGGGGGTAAATGGTAATTTTTGAAAGTTTTGAGGT
Found at i:228791 original size:116 final size:115
Alignment explanation
Indices: 228650--228898 Score: 294
Period size: 116 Copynumber: 2.2 Consensus size: 115
228640 ACCTGAGGGG
228650 CAAAATGGTAA-TTTTGGATTCTC-GGGGGTAAAATGGTAATTTTGGGAAA-ATT-AGGGGTTAA
1 CAAAATGG-AATTTTTGGATTCTCGGGGGGT-AAATGGTAATTTT-GGAAAGATTCA-GGGTTAA
* * *
228711 AATGGAATTTTTAGACATTCGGGGGTAAAAGGGTAA-TTTTGAGAGTTTTGAGGT
62 AATGGAATTTTTAGACATTC-GGGGTAAAAGAGTAATTTTTGAAAGTTTCGAGGT
* ** *
228765 CAAAAATGGAGTTTTTGGATAT-TCGGGGGGTAAATGGTAATTTTTTAAAGTTTCAGGGTTAAAA
1 C-AAAATGGAATTTTTGGAT-TCTCGGGGGGTAAATGGTAATTTTGGAAAGATTCAGGGTTAAAA
* * *
228829 TGGAATTTTTGGACATTCGGGGTGAAATAGTAATTTTTGAAAGTTTCGAGGT
64 TGGAATTTTTAGACATTCGGGGTAAAAGAGTAATTTTTGAAAGTTTCGAGGT
*
228881 CAAAATGTAATTTTTGGA
1 CAAAATGGAATTTTTGGA
228899 GGTTCGGGAC
Statistics
Matches: 115, Mismatches: 12, Indels: 14
0.82 0.09 0.10
Matches are distributed among these distances:
115 32 0.28
116 75 0.65
117 8 0.07
ACGTcount: A:0.31, C:0.05, G:0.28, T:0.36
Consensus pattern (115 bp):
CAAAATGGAATTTTTGGATTCTCGGGGGGTAAATGGTAATTTTGGAAAGATTCAGGGTTAAAATG
GAATTTTTAGACATTCGGGGTAAAAGAGTAATTTTTGAAAGTTTCGAGGT
Found at i:228890 original size:29 final size:29
Alignment explanation
Indices: 228796--229081 Score: 192
Period size: 29 Copynumber: 9.7 Consensus size: 29
228786 TTCGGGGGGT
** *
228796 AAATGGTAATTTTTTAAAGTTTC-AGGGTTA
1 AAAT-GTAATTTTTGGAAGTTTCGA-GGTCA
* * *
228826 AAATGGAATTTTTGGACA--TTCGGGGT-G
1 AAATGTAATTTTTGGA-AGTTTCGAGGTCA
*
228853 AAATAGTAATTTTTGAAAGTTTCGAGGTCA
1 AAAT-GTAATTTTTGGAAGTTTCGAGGTCA
* *
228883 AAATGTAATTTTTGG-AGGTTCG-GGACAAA
1 AAATGTAATTTTTGGAAGTTTCGAGGTC--A
*
228912 AAATATAATTTTTGGAAGTTTCGAGGTCA
1 AAATGTAATTTTTGGAAGTTTCGAGGTCA
* * * *
228941 AAATTGGATTTTTTGGAAG-TTCGGGGTAA
1 AAA-TGTAATTTTTGGAAGTTTCGAGGTCA
* * *
228970 AAATATAATTTTTGGAAGTTTCGGGGCCAA
1 AAATGTAATTTTTGGAAGTTTCGAGGTC-A
* ** *
229000 AAATGGAAGATTTGGAAG-TTCGAGGGTAA
1 AAATGTAATTTTTGGAAGTTTCGA-GGTCA
* *
229029 AAATATAATTTTTGGAAGTTTCGAGGTAAAA
1 AAATGTAATTTTTGGAAGTTTCGAGGT--CA
*
229060 AAATGGAATTTTTGGATAGTTT
1 AAATGTAATTTTTGGA-AGTTT
229082 AGGGGCCTCC
Statistics
Matches: 200, Mismatches: 38, Indels: 34
0.74 0.14 0.12
Matches are distributed among these distances:
27 8 0.04
28 34 0.17
29 85 0.43
30 49 0.25
31 19 0.09
32 5 0.03
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (29 bp):
AAATGTAATTTTTGGAAGTTTCGAGGTCA
Found at i:228957 original size:59 final size:58
Alignment explanation
Indices: 228709--229080 Score: 339
Period size: 58 Copynumber: 6.4 Consensus size: 58
228699 ATTAGGGGTT
* *** *
228709 AAAATGGAATTTTTAGACA-TTCGGGGGTAAAAGGGTAA-TTTT-GAGAGTTTTGAGGTCA
1 AAAATGGAATTTTTGGA-AGTTC-GGGGTAAAAATATAATTTTTGGA-AGTTTCGAGGTCA
* *** * ** *
228767 AAAATGGAGTTTTTGGATA-TTCGGGGGGTAAATGGTAATTTTTTAAAGTTTC-AGGGT-T
1 AAAATGGAATTTTTGGA-AGTTCGGGGTAAAAAT-ATAATTTTTGGAAGTTTCGA-GGTCA
* *
228825 AAAATGGAATTTTTGGACA-TTCGGGGT-GAAATAGTAATTTTTGAAAGTTTCGAGGTC-
1 AAAATGGAATTTTTGGA-AGTTCGGGGTAAAAATA-TAATTTTTGGAAGTTTCGAGGTCA
* * **
228882 AAAATGTAATTTTTGGAGGTTCGGGACAAAAAATATAATTTTTGGAAGTTTCGAGGTCA
1 AAAATGGAATTTTTGGAAGTTCGGG-GTAAAAATATAATTTTTGGAAGTTTCGAGGTCA
* * * *
228941 AAATTGGATTTTTTGGAAGTTCGGGGTAAAAATATAATTTTTGGAAGTTTCGGGGCCA
1 AAAATGGAATTTTTGGAAGTTCGGGGTAAAAATATAATTTTTGGAAGTTTCGAGGTCA
** *
228999 AAAATGGAAGATTTGGAAGTTCGAGGGTAAAAATATAATTTTTGGAAGTTTCGAGGTAAA
1 AAAATGGAATTTTTGGAAGTTCG-GGGTAAAAATATAATTTTTGGAAGTTTCGAGGT-CA
229059 AAAATGGAATTTTTGGATAGTT
1 AAAATGGAATTTTTGGA-AGTT
229081 TAGGGGCCTC
Statistics
Matches: 260, Mismatches: 40, Indels: 25
0.80 0.12 0.08
Matches are distributed among these distances:
57 51 0.20
58 119 0.46
59 69 0.27
60 17 0.07
61 4 0.02
ACGTcount: A:0.33, C:0.05, G:0.27, T:0.35
Consensus pattern (58 bp):
AAAATGGAATTTTTGGAAGTTCGGGGTAAAAATATAATTTTTGGAAGTTTCGAGGTCA
Found at i:231318 original size:169 final size:169
Alignment explanation
Indices: 231032--231361 Score: 599
Period size: 169 Copynumber: 2.0 Consensus size: 169
231022 AGGAAGCTAC
*
231032 TTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGTTCATAT
1 TTTATTACTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGTTCATAT
*
231097 CGAGCATGGGTTTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCGTTTGTT
66 CGAGCATGAGTTTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCGTTTGTT
231162 TCAATCCGCTTCTCTGTATCTCATCAGGAAGGTAACCAT
131 TCAATCCGCTTCTCTGTATCTCATCAGGAAGGTAACCAT
* * *
231201 TTTATTACTTCGACTTGCTTCTTAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTT-TCTTATA
1 TTTATTACTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGT-TCATA
231265 TCGAGCATGAGTTTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCGTTTGT
65 TCGAGCATGAGTTTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCGTTTGT
231330 TTCAATCCGCTTCTCTGTATCTCATCAGGAAG
130 TTCAATCCGCTTCTCTGTATCTCATCAGGAAG
231362 ACGAATTTGG
Statistics
Matches: 155, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
168 1 0.01
169 154 0.99
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (169 bp):
TTTATTACTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGTTCATAT
CGAGCATGAGTTTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCGTTTGTT
TCAATCCGCTTCTCTGTATCTCATCAGGAAGGTAACCAT
Found at i:231428 original size:206 final size:206
Alignment explanation
Indices: 231170--231726 Score: 812
Period size: 206 Copynumber: 2.7 Consensus size: 206
231160 TTTCAATCCG
* * * *
231170 CTTCTCTGTATCTCATCAGGAAGGTAACCATTTTATTACTTCGACTTGCTTCTTAGTATCTCATC
1 CTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTACTTCGACCTGCTTCTCAGTATCTCATC
* * *
231235 AGGAAGCTGGGGTTCGAAGATTTTCTTATATCGAGCATGAGTTTGATTTGGTCTTCTTCTCAGTA
66 AGGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCATGAGTTTGATTTGGTATTCTTCTCAGTA
* * *
231300 TCTCATCAGGAAGATGACCGCATCGTTTGTTTCAATCCGCTTCTCTGTATCTCATCAGGAAGACG
131 TCTCATCAGGAAGACGACCGCATCATTTGTTTCAATCCGCTTCTCTGTATCTCATCAGAAAGACG
231365 AATTTGGTCCA
196 AATTTGGTCCA
* *
231376 CTTCTCGGTATCTCATCAGGAAGCTAACCATTTTATTACTTCGACCTGCTTCTCAGTATTTCATC
1 CTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTACTTCGACCTGCTTCTCAGTATCTCATC
* * *
231441 AAGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCGTGAGTTTGATTTGGTATTCTTCTTAGTA
66 AGGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCATGAGTTTGATTTGGTATTCTTCTCAGTA
231506 TCTCATCAGGAAGACGACCGCATCATTTGTTTCAATCCGCTTCTCTGTATCTCATCAGAAAGACG
131 TCTCATCAGGAAGACGACCGCATCATTTGTTTCAATCCGCTTCTCTGTATCTCATCAGAAAGACG
*
231571 AATTTTGTCCA
196 AATTTGGTCCA
* * *
231582 CTTCTCAATATCTCATCAGGAAGCTAATCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATC
1 CTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTACTTCGACCTGCTTCTCAGTATCTCATC
* * * * ** * *
231647 AGGAAG-TCGGGGTTCTAAGATTTGCTCGCT-TTGAGCCTTGTTTCATTGATTTGGTCTACTTCT
66 AGGAAGCT-GGGGTTCGAAGATTTGCTC-ATATCGAG-CATGAGT--TTGATTTGGTATTCTTCT
231710 CAGTATCTCATCAGGAA
126 CAGTATCTCATCAGGAA
231727 ATAATCACAT
Statistics
Matches: 316, Mismatches: 30, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
205 1 0.00
206 278 0.88
207 5 0.02
209 32 0.10
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.37
Consensus pattern (206 bp):
CTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTACTTCGACCTGCTTCTCAGTATCTCATC
AGGAAGCTGGGGTTCGAAGATTTGCTCATATCGAGCATGAGTTTGATTTGGTATTCTTCTCAGTA
TCTCATCAGGAAGACGACCGCATCATTTGTTTCAATCCGCTTCTCTGTATCTCATCAGAAAGACG
AATTTGGTCCA
Found at i:232091 original size:101 final size:101
Alignment explanation
Indices: 231890--232084 Score: 264
Period size: 101 Copynumber: 1.9 Consensus size: 101
231880 GTTGCTGTAG
* * * * ** *
231890 TTTTATTCCAACTTCGCTGCAACATCAGGAAGATAGGATTTGTTGTTGAAGCTTCATCTTGCTCT
1 TTTTAATCCAACTTCACTGCAACATCAAGAAGATAGGAATTGACGTTAAAGCTTCATCTTGCTCT
231955 TACTACAACTTCAGAGAGATAAAGACTTGCTATTGT
66 TACTACAACTTCAGAGAGATAAAGACTTGCTATTGT
* * * * * *
231991 TTTTAATCCAACTTTACTGCAACTTCAAGAGGATAGGAATTGACGTTAAAGCTTCGTTTTTCTCT
1 TTTTAATCCAACTTCACTGCAACATCAAGAAGATAGGAATTGACGTTAAAGCTTCATCTTGCTCT
*
232056 TACTGCAACTTCAGAGAGATAAAGACTTG
66 TACTACAACTTCAGAGAGATAAAGACTTG
232085 TCATTGTAGT
Statistics
Matches: 80, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
101 80 1.00
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.35
Consensus pattern (101 bp):
TTTTAATCCAACTTCACTGCAACATCAAGAAGATAGGAATTGACGTTAAAGCTTCATCTTGCTCT
TACTACAACTTCAGAGAGATAAAGACTTGCTATTGT
Found at i:232245 original size:50 final size:50
Alignment explanation
Indices: 232181--232604 Score: 214
Period size: 50 Copynumber: 8.4 Consensus size: 50
232171 GTACCGGGTT
* * * * *
232181 CGCCATTGCAACTTAAACCTTTCCCCTTCAAATCTTCGTGGTACTAGATT
1 CGCCGTTGCGACTTAAATCTTTCCCCTTCATATCTTCGTGGTACTAGATC
* * * * *
232231 CGTCGTTGCGACTTAAATCTTT-CCCTTCTTGTCTTCTGAGGTAC-ACGGTC
1 CGCCGTTGCGACTTAAATCTTTCCCCTTCATATCTTC-GTGGTACTA-GATC
* * ** * *
232281 CGCCGTTGCGACTTAAACCTTTCCCTTTTGTATCTTTGTGGTACTGGATC
1 CGCCGTTGCGACTTAAATCTTTCCCCTTCATATCTTCGTGGTACTAGATC
* * * * * *
232331 CACCGTTGCGGTCTTAGATCTTT-CCCTTCATGTCTTCATGGTACTAGATT
1 CGCCGTTGC-GACTTAAATCTTTCCCCTTCATATCTTCGTGGTACTAGATC
* * * * * * *
232381 CGTCGTTGAGGCTTAAATCTTT-CCCTTCGTGTCTTCTGAGGTAC-ACGGTC
1 CGCCGTTGCGACTTAAATCTTTCCCCTTCATATCTTC-GTGGTACTA-GATC
* * * * ** * * * *
232431 TTGCCGTTGCGACTTAGACCTTTCCCTTTTGTATTTTTGTGGTACTGGATT
1 -CGCCGTTGCGACTTAAATCTTTCCCCTTCATATCTTCGTGGTACTAGATC
** * * * * * *
232482 CGCTATTGCGGCTTAAATCTTT-CCCTTCGTGTCTTTTGAGGTAC-ACGGTC
1 CGCCGTTGCGACTTAAATCTTTCCCCTTCATATC-TTCGTGGTACTA-GATC
* * * ** * *
232532 CTGCTGTTGCGACTTAAACCTTTCCCTTTTGTATCTTTGTGGTACTGGATC
1 C-GCCGTTGCGACTTAAATCTTTCCCCTTCATATCTTCGTGGTACTAGATC
* *
232583 CGCTGTTACGACTTAAATCTTT
1 CGCCGTTGCGACTTAAATCTTT
232605 TTCTTAGTGT
Statistics
Matches: 277, Mismatches: 82, Indels: 30
0.71 0.21 0.08
Matches are distributed among these distances:
49 44 0.16
50 142 0.51
51 74 0.27
52 17 0.06
ACGTcount: A:0.16, C:0.25, G:0.19, T:0.40
Consensus pattern (50 bp):
CGCCGTTGCGACTTAAATCTTTCCCCTTCATATCTTCGTGGTACTAGATC
Found at i:232322 original size:100 final size:101
Alignment explanation
Indices: 232158--232367 Score: 246
Period size: 100 Copynumber: 2.1 Consensus size: 101
232148 ACCTTTCTCA
*
232158 TCATGT-TTCTAAGGTACCGGGTTCGCCATTGCAACTTAAACCTTTCCCCTTCAAATCTTCGTGG
1 TCATGTCTTCTAAGGTACCGGGTCCGCCATTGCAACTTAAACCTTTCCCCTTCAAATCTTCGTGG
* **
232222 TACTAGATTCGTCGTTGC-GACTTAAATCTTTCCCT
66 TACTAGATCCACCGTTGCGGACTTAAATCTTTCCCT
* * * * * *** *
232257 TCTTGTCTTCTGAGGTACAC-GGTCCGCCGTTGCGACTTAAACCTTTCCCTTTTGTATCTTTGTG
1 TCATGTCTTCTAAGGTAC-CGGGTCCGCCATTGCAACTTAAACCTTTCCCCTTCAAATCTTCGTG
* * *
232321 GTACTGGATCCACCGTTGCGGTCTTAGATCTTTCCCT
65 GTACTAGATCCACCGTTGCGGACTTAAATCTTTCCCT
232358 TCATGTCTTC
1 TCATGTCTTC
232368 ATGGTACTAG
Statistics
Matches: 91, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
99 5 0.05
100 61 0.67
101 25 0.27
ACGTcount: A:0.16, C:0.28, G:0.18, T:0.38
Consensus pattern (101 bp):
TCATGTCTTCTAAGGTACCGGGTCCGCCATTGCAACTTAAACCTTTCCCCTTCAAATCTTCGTGG
TACTAGATCCACCGTTGCGGACTTAAATCTTTCCCT
Found at i:232498 original size:101 final size:101
Alignment explanation
Indices: 232390--232660 Score: 416
Period size: 101 Copynumber: 2.7 Consensus size: 101
232380 TCGTCGTTGA
*
232390 GGCTTAAATCTTTCCCTTCGTGTCTTCTGAGGTACACGGTCTTGCCGTTGCGACTTAGACCTTTC
1 GGCTTAAATCTTTCCCTTCGTGTCTTCTGAGGTACACGGTCCTGCCGTTGCGACTTAGACCTTTC
* * *
232455 CCTTTTGTATTTTTGTGGTACTGGATTCGCTATTGC
66 CCTTTTGTATCTTTGTGGTACTGGATCCGCTATTAC
* * *
232491 GGCTTAAATCTTTCCCTTCGTGTCTTTTGAGGTACACGGTCCTGCTGTTGCGACTTAAACCTTTC
1 GGCTTAAATCTTTCCCTTCGTGTCTTCTGAGGTACACGGTCCTGCCGTTGCGACTTAGACCTTTC
*
232556 CCTTTTGTATCTTTGTGGTACTGGATCCGCTGTTAC
66 CCTTTTGTATCTTTGTGGTACTGGATCCGCTATTAC
* ** * * *
232592 GACTTAAATCTTTTTCTTAGTGTTTTCTGAGGTACACGGTCCTACCGTTGCGACTTAGACCTTTC
1 GGCTTAAATCTTTCCCTTCGTGTCTTCTGAGGTACACGGTCCTGCCGTTGCGACTTAGACCTTTC
232657 CCTT
66 CCTT
232661 CATGTCTTCA
Statistics
Matches: 153, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
101 153 1.00
ACGTcount: A:0.14, C:0.24, G:0.20, T:0.41
Consensus pattern (101 bp):
GGCTTAAATCTTTCCCTTCGTGTCTTCTGAGGTACACGGTCCTGCCGTTGCGACTTAGACCTTTC
CCTTTTGTATCTTTGTGGTACTGGATCCGCTATTAC
Found at i:232502 original size:150 final size:150
Alignment explanation
Indices: 232192--232516 Score: 481
Period size: 150 Copynumber: 2.2 Consensus size: 150
232182 GCCATTGCAA
* ** * *
232192 CTTAAACCTTTCCCCTTCAAATCTTCGTGGTACTAGATTCGTCGTTGCGACTTAAATCTTTCCCT
1 CTTAAATCTTT-CCCTTCATGTCTTCATGGTACTAGATTCGTCGTTGAGACTTAAATCTTTCCCT
*
232257 TCTTGTCTTCTGAGGTACACGGTCCGCCGTTGCGACTTAAACCTTTCCCTTTTGTATCTTTGTGG
65 TCGTGTCTTCTGAGGTACACGGTCCGCCGTTGCGACTTAAACCTTTCCCTTTTGTATCTTTGTGG
*
232322 TACTGGATCCACCGTTGCGGT
130 TACTGGATCCACCATTGCGGT
* *
232343 CTTAGATCTTTCCCTTCATGTCTTCATGGTACTAGATTCGTCGTTGAGGCTTAAATCTTTCCCTT
1 CTTAAATCTTTCCCTTCATGTCTTCATGGTACTAGATTCGTCGTTGAGACTTAAATCTTTCCCTT
* * *
232408 CGTGTCTTCTGAGGTACACGGTCTTGCCGTTGCGACTTAGACCTTTCCCTTTTGTATTTTTGTGG
66 CGTGTCTTCTGAGGTACACGGTC-CGCCGTTGCGACTTAAACCTTTCCCTTTTGTATCTTTGTGG
* * *
232473 TACTGGATTCGCTATTGCGG-
130 TACTGGATCCACCATTGCGGT
*
232493 CTTAAATCTTTCCCTTCGTGTCTT
1 CTTAAATCTTTCCCTTCATGTCTT
232517 TTGAGGTACA
Statistics
Matches: 156, Mismatches: 17, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
150 93 0.60
151 63 0.40
ACGTcount: A:0.15, C:0.26, G:0.19, T:0.40
Consensus pattern (150 bp):
CTTAAATCTTTCCCTTCATGTCTTCATGGTACTAGATTCGTCGTTGAGACTTAAATCTTTCCCTT
CGTGTCTTCTGAGGTACACGGTCCGCCGTTGCGACTTAAACCTTTCCCTTTTGTATCTTTGTGGT
ACTGGATCCACCATTGCGGT
Found at i:232595 original size:151 final size:150
Alignment explanation
Indices: 232192--232604 Score: 437
Period size: 151 Copynumber: 2.7 Consensus size: 150
232182 GCCATTGCAA
* ** * *
232192 CTTAAACCTTTCCCCTTCAAATCTTCGTGGTACTAGATTCGTCGTTGCGACTTAAATCTTTCCCT
1 CTTAAATCTTT-CCCTTCATGTCTTCATGGTACTAGATCCGTCGTTGCGACTTAAATCTTTCCCT
232257 TCTTG-TCTTCTGAGGTACACGGTCCGCCGTTGCGACTTAAACCTTTCCCTTTTGTATCTTTGTG
65 T-TTGTTCTTCTGAGGTACACGGTCCGCCGTTGCGACTTAAACCTTTCCCTTTTGTATCTTTGTG
*
232321 GTACTGGATCCACCGTTGCGGT
129 GTACTGGATCCACCATTGCGGT
* * * *
232343 CTTAGATCTTTCCCTTCATGTCTTCATGGTACTAGATTCGTCGTTGAGGCTTAAATCTTTCCC-T
1 CTTAAATCTTTCCCTTCATGTCTTCATGGTACTAGATCCGTCGTTGCGACTTAAATCTTTCCCTT
* * * *
232407 TCGTGTCTTCTGAGGTACACGGTCTTGCCGTTGCGACTTAGACCTTTCCCTTTTGTATTTTTGTG
66 TTGT-TCTTCTGAGGTACACGGTC-CGCCGTTGCGACTTAAACCTTTCCCTTTTGTATCTTTGTG
* * *
232472 GTACTGGATTCGCTATTGCGG-
129 GTACTGGATCCACCATTGCGGT
* * * *
232493 CTTAAATCTTTCCCTTCGTGTCTT-TTGAGGTAC-ACGGTCC-TGCTGTTGCGACTTAAACCTTT
1 CTTAAATCTTTCCCTTCATGTCTTCAT--GGTACTA-GATCCGT-C-GTTGCGACTTAAATCTTT
* * * * *
232555 CCCTTTTGTATCTT-TGTGGTAC-TGGATCCGCTGTTACGACTTAAATCTTT
61 CCCTTTTGT-TCTTCTGAGGTACACGG-TCCGCCGTTGCGACTTAAACCTTT
232605 TTCTTAGTGT
Statistics
Matches: 220, Mismatches: 32, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
148 2 0.01
149 2 0.01
150 90 0.41
151 91 0.41
152 27 0.12
153 8 0.04
ACGTcount: A:0.15, C:0.25, G:0.19, T:0.40
Consensus pattern (150 bp):
CTTAAATCTTTCCCTTCATGTCTTCATGGTACTAGATCCGTCGTTGCGACTTAAATCTTTCCCTT
TTGTTCTTCTGAGGTACACGGTCCGCCGTTGCGACTTAAACCTTTCCCTTTTGTATCTTTGTGGT
ACTGGATCCACCATTGCGGT
Found at i:232626 original size:50 final size:49
Alignment explanation
Indices: 232235--232626 Score: 231
Period size: 50 Copynumber: 7.8 Consensus size: 49
232225 TAGATTCGTC
* * * * *
232235 GTTGCGACTTAAATCTTTCCCTTCTTGTCTTCTGAGGTACACGG-TCCGCC
1 GTTGCGACTTAAATCTTTCCCTT-GTGTATTTTGAGGTAC-TGGATCCGCT
* * * * *
232285 GTTGCGACTTAAACCTTTCCCTTTTGTATCTTTGTGGTACTGGATCCACC
1 GTTGCGACTTAAATCTTTCCCTTGTGTAT-TTTGAGGTACTGGATCCGCT
* * * * * * *
232335 GTTGCGGTCTTAGATCTTTCCCTTCATG--TCTTCATGGTACTAGATTCG-T
1 GTTGC-GACTTAAATCTTTCCCTT-GTGTATTTTGA-GGTACTGGATCCGCT
* * * * * * *
232384 CGTTGAGGCTTAAATCTTTCCCTTCGTGTCTTCTGAGGTACACGG-TCTTGCC
1 -GTTGCGACTTAAATCTTTCCCTT-GTGTATTTTGAGGTAC-TGGATC-CGCT
* * * * *
232436 GTTGCGACTTAGACCTTTCCCTTTTGTATTTTTGTGGTACTGGATTCGCT
1 GTTGCGACTTAAATCTTTCCCTTGTGTA-TTTTGAGGTACTGGATCCGCT
* * * *
232486 ATTGCGGCTTAAATCTTTCCCTTCGTGTCTTTTGAGGTACACGG-TCCTGCT
1 GTTGCGACTTAAATCTTTCCCTT-GTGTATTTTGAGGTAC-TGGATCC-GCT
* * *
232537 GTTGCGACTTAAACCTTTCCCTTTTGTATCTTTGTGGTACTGGATCCGCT
1 GTTGCGACTTAAATCTTTCCCTTGTGTAT-TTTGAGGTACTGGATCCGCT
* **
232587 GTTACGACTTAAATCTTTTTCTTAGTGT-TTTCTGAGGTAC
1 GTTGCGACTTAAATCTTTCCCTT-GTGTATTT-TGAGGTAC
232627 ACGGTCCTAC
Statistics
Matches: 259, Mismatches: 63, Indels: 40
0.72 0.17 0.11
Matches are distributed among these distances:
49 30 0.12
50 135 0.52
51 92 0.36
52 2 0.01
ACGTcount: A:0.15, C:0.24, G:0.20, T:0.41
Consensus pattern (49 bp):
GTTGCGACTTAAATCTTTCCCTTGTGTATTTTGAGGTACTGGATCCGCT
Found at i:232755 original size:44 final size:44
Alignment explanation
Indices: 232692--232786 Score: 181
Period size: 44 Copynumber: 2.2 Consensus size: 44
232682 CCTGTAGAAT
*
232692 ATGCTCAAATGGGCCTCTAGGTAGGCTAGATTGTTTAGGATGTC
1 ATGCTCAAATGGGCCTCTAGGTAGGCTAGATTGTTTAGGATGCC
232736 ATGCTCAAATGGGCCTCTAGGTAGGCTAGATTGTTTAGGATGCC
1 ATGCTCAAATGGGCCTCTAGGTAGGCTAGATTGTTTAGGATGCC
232780 ATGCTCA
1 ATGCTCA
232787 GAGTGAGTCA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 50 1.00
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (44 bp):
ATGCTCAAATGGGCCTCTAGGTAGGCTAGATTGTTTAGGATGCC
Found at i:238132 original size:97 final size:96
Alignment explanation
Indices: 237945--238137 Score: 232
Period size: 97 Copynumber: 2.0 Consensus size: 96
237935 TTTTTGGGAA
** * *
237945 AAGGATATTCGATTATCTCGATTTGAAGAAAGGTTGCACCTAGTAAGTTAAGGCGCAATATTTCA
1 AAGGATATTCGATTATCTCGATTTGAAGAAAAATTGCACCTAGTAAGTTAAAGCACAATATTTCA
* *
238010 GAATTGAAGATAAGGAAACATTGCCTCGATT
66 GAATCGAAGATAAAGAAACATTGCCTCGATT
* *
238041 AAGGGTATTCGATTATTTCGATTTGAAGAAAAAATTGCACCTAGTAAGTTAAAGCACAA-ATTTT
1 AAGGATATTCGATTATCTCGATTTGAAG-AAAAATTGCACCTAGTAAGTTAAAGCACAATA-TTT
*
238105 C-GAAACTCGAA-ATAAA-AGAATATTGCCTCGATT
64 CAG-AA-TCGAAGATAAAGA-AACATTGCCTCGATT
238138 TTAAAGTTTT
Statistics
Matches: 83, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
96 29 0.35
97 50 0.60
98 4 0.05
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (96 bp):
AAGGATATTCGATTATCTCGATTTGAAGAAAAATTGCACCTAGTAAGTTAAAGCACAATATTTCA
GAATCGAAGATAAAGAAACATTGCCTCGATT
Found at i:238390 original size:29 final size:28
Alignment explanation
Indices: 238358--238413 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 28
238348 TGGGACTTTT
*
238358 TGGATACCCGGGGGGAAAAGTGGTAATTC
1 TGGATACCCGGGGGCAAAA-TGGTAATTC
* **
238387 TGGATTCTTGGGGGCAAAATGGTAATT
1 TGGATACCCGGGGGCAAAATGGTAATT
238414 TTGGGAAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
28 8 0.35
29 15 0.65
ACGTcount: A:0.27, C:0.11, G:0.36, T:0.27
Consensus pattern (28 bp):
TGGATACCCGGGGGCAAAATGGTAATTC
Found at i:238529 original size:57 final size:57
Alignment explanation
Indices: 238396--238530 Score: 137
Period size: 58 Copynumber: 2.4 Consensus size: 57
238386 CTGGATTCTT
* * * *
238396 GGGGGCAAAATGGTAATTTTGGGAAAATTCGAGGTTAAATAGAATTTTTAGACATTC
1 GGGGGCAAAATGGTAATTTTGAGAAAATTCGAGGTAAAAAAGAATTTTTAGACATCC
* * * ** * *
238453 GAGGGTAAAAGGGTAATTTTGAG-AGTTTTGAGGTAAAAAATGAAGTTTTTGGACATCC
1 GGGGGCAAAATGGTAATTTTGAGAAAATTCGAGGTAAAAAA-GAA-TTTTTAGACATCC
*
238511 GGGGGCAAAATGGTATTTTT
1 GGGGGCAAAATGGTAATTTT
238531 TTTAAAGTTT
Statistics
Matches: 61, Mismatches: 15, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
56 12 0.20
57 22 0.36
58 27 0.44
ACGTcount: A:0.33, C:0.06, G:0.29, T:0.32
Consensus pattern (57 bp):
GGGGGCAAAATGGTAATTTTGAGAAAATTCGAGGTAAAAAAGAATTTTTAGACATCC
Found at i:238615 original size:28 final size:27
Alignment explanation
Indices: 238528--238683 Score: 80
Period size: 29 Copynumber: 5.4 Consensus size: 27
238518 AAATGGTATT
*
238528 TTTTTTAAAGTTTAGAGGTCAAAATGGAA
1 TTTTTGAAAGTTTA-AGGTCAAAATGG-A
** * * *
238557 TTTTTGAACA-TTTGGGGTGAAATTGTAA
1 TTTTTGAA-AGTTTAAGGTCAAAATG-GA
238585 TTTTTGAAAGTTTTAAGGTCAAAATGGA
1 TTTTTGAAAG-TTTAAGGTCAAAATGGA
* * *** * *
238613 TTTTTGGAGGTTCGGGGACAAAAATTGAA
1 TTTTTGAAAGTTTAAGGTC-AAAA-TGGA
*
238642 TTTTTGAAAGTTTCGAGGTCAAAAATGGAA
1 TTTTTGAAAGTTT-AAGGTC-AAAATGG-A
*
238672 TTTTTGGAAGTT
1 TTTTTGAAAGTT
238684 CGGGGGTAAG
Statistics
Matches: 94, Mismatches: 25, Indels: 15
0.70 0.19 0.11
Matches are distributed among these distances:
27 6 0.06
28 30 0.32
29 36 0.38
30 22 0.23
ACGTcount: A:0.33, C:0.04, G:0.24, T:0.38
Consensus pattern (27 bp):
TTTTTGAAAGTTTAAGGTCAAAATGGA
Found at i:238645 original size:29 final size:28
Alignment explanation
Indices: 238605--238918 Score: 243
Period size: 29 Copynumber: 10.8 Consensus size: 28
238595 TTTTAAGGTC
*
238605 AAAATGG-ATTTTTGGAGGTTCGGGGACA
1 AAAATGGAATTTTTGGAAGTTCGGGG-CA
* * *
238633 AAAATTGAATTTTTGAAAGTTTCGAGGTCA
1 AAAATGGAATTTTTGGAAG-TTCG-GGGCA
*
238663 AAAATGGAATTTTTGGAAGTTCGGGGGTA
1 AAAATGGAATTTTTGGAAGTTC-GGGGCA
* ** *** **
238692 AGAATATAATTTTTGGAAGTTTTACGGTT
1 AAAATGGAATTTTTGGAAG-TTCGGGGCA
* **
238721 AAAATAGAATTTTTGGAAGTTCGAGGGTT
1 AAAATGGAATTTTTGGAAGTTCG-GGGCA
** *
238750 AAAATATAATTTTTGGAAGTTTCGAGGCTA
1 AAAATGGAATTTTTGGAAG-TTCGGGGC-A
* *
238780 AAAATGGAATTTTTGGAAGTTTGAGGGTA
1 AAAATGGAATTTTTGGAAGTTCG-GGGCA
* * *
238809 AAAATAGAATTTTTGGAAGTTTAGGGTCA
1 AAAATGGAATTTTTGGAAG-TTCGGGGCA
*
238838 AAAATGGAATTTTTGGAAGTTCGAGGGTA
1 AAAATGGAATTTTTGGAAGTTCG-GGGCA
** *
238867 AAAATATAATTTTTGGAAGCTTCAGGGTCA
1 AAAATGGAATTTTTGGAAG-TTC-GGGGCA
238897 AAAATGGAATTTTTGGATAGTT
1 AAAATGGAATTTTTGGA-AGTT
238919 TAGGGGCCTT
Statistics
Matches: 229, Mismatches: 43, Indels: 26
0.77 0.14 0.09
Matches are distributed among these distances:
28 11 0.05
29 138 0.60
30 75 0.33
31 5 0.02
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.35
Consensus pattern (28 bp):
AAAATGGAATTTTTGGAAGTTCGGGGCA
Found at i:238743 original size:58 final size:58
Alignment explanation
Indices: 238543--238918 Score: 392
Period size: 59 Copynumber: 6.5 Consensus size: 58
238533 TAAAGTTTAG
* * * * * *
238543 AGGTC-AAAATGGAATTTTT-GAACATT-TGGGGTGAAATTGTAATTTTTGAAAGTTTT
1 AGGTCAAAAATGGAATTTTTGGAA-GTTCGGGGGTAAAAATATAATTTTTGGAAGTTTT
* ** * *
238599 AAGGTC-AAAATGG-ATTTTTGGAGGTTCGGGGACAAAAAT-TGAATTTTTGAAAGTTTCG
1 -AGGTCAAAAATGGAATTTTTGGAAGTTCGGGGGTAAAAATAT-AATTTTTGGAAGTTT-T
*
238657 AGGTCAAAAATGGAATTTTTGGAAGTTCGGGGGTAAGAATATAATTTTTGGAAGTTTT
1 AGGTCAAAAATGGAATTTTTGGAAGTTCGGGGGTAAAAATATAATTTTTGGAAGTTTT
* * * * *
238715 ACGGT-TAAAATAGAATTTTTGGAAGTTCGAGGGTTAAAATATAATTTTTGGAAGTTTCG
1 A-GGTCAAAAATGGAATTTTTGGAAGTTCGGGGGTAAAAATATAATTTTTGGAAGTTT-T
* * *
238774 AGG-CTAAAAATGGAATTTTTGGAAGTTTGAGGGTAAAAATAGAATTTTTGGAAG-TTT
1 AGGTC-AAAAATGGAATTTTTGGAAGTTCGGGGGTAAAAATATAATTTTTGGAAGTTTT
* * *
238831 AGGGTCAAAAATGGAATTTTTGGAAGTTCGAGGGTAAAAATATAATTTTTGGAAGCTTC
1 A-GGTCAAAAATGGAATTTTTGGAAGTTCGGGGGTAAAAATATAATTTTTGGAAGTTTT
238890 AGGGTCAAAAATGGAATTTTTGGATAGTT
1 A-GGTCAAAAATGGAATTTTTGGA-AGTT
238919 TAGGGGCCTT
Statistics
Matches: 275, Mismatches: 29, Indels: 27
0.83 0.09 0.08
Matches are distributed among these distances:
56 9 0.03
57 42 0.15
58 108 0.39
59 111 0.40
60 5 0.02
ACGTcount: A:0.34, C:0.05, G:0.26, T:0.36
Consensus pattern (58 bp):
AGGTCAAAAATGGAATTTTTGGAAGTTCGGGGGTAAAAATATAATTTTTGGAAGTTTT
Found at i:238764 original size:117 final size:114
Alignment explanation
Indices: 238528--238918 Score: 427
Period size: 117 Copynumber: 3.4 Consensus size: 114
238518 AAATGGTATT
* * * * * *
238528 TTTTTTAAAGTTTAGAGGTC-AAAATGGAATTTTT-GAACATTTGGGGTGAAATTGTAATTTTTG
1 TTTTTGAAAGTTTCGAGGTCAAAAATGGAATTTTTGGAA-GTTGGGGGT-AAAATATAATTTTTG
* * * * *
238591 AAAGTTTTAAGGTCAAAATGGATTTTTGGAGGTTCG-GGGACAAAAAT-TGAA
64 GAAGTTTTAAGGTAAAAATGAATTTTTGGAAGTTCGAGGG-TAAAAATAT-AA
238642 TTTTTGAAAGTTTCGAGGTCAAAAATGGAATTTTTGGAAGTTCGGGGGTAAGAATATAATTTTTG
1 TTTTTGAAAGTTTCGAGGTCAAAAATGGAATTTTTGGAAGTT-GGGGGTAA-AATATAATTTTTG
* * *
238707 GAAGTTTTACGGTTAAAATAGAATTTTTGGAAGTTCGAGGGTTAAAATATAA
64 GAAGTTTTAAGGTAAAAAT-GAATTTTTGGAAGTTCGAGGGTAAAAATATAA
* * *
238759 TTTTTGGAAGTTTCGAGG-CTAAAAATGGAATTTTTGGAAGTTTGAGGGTAAAAATAGAATTTTT
1 TTTTTGAAAGTTTCGAGGTC-AAAAATGGAATTTTTGGAAG-TTGGGGGT-AAAATATAATTTTT
*
238823 GGAAG-TTTAGGGTCAAAAATGGAATTTTTGGAAGTTCGAGGGTAAAAATATAA
63 GGAAGTTTTAAGGT-AAAAAT-GAATTTTTGGAAGTTCGAGGGTAAAAATATAA
* *
238876 TTTTTGGAAGCTTC-AGGGTCAAAAATGGAATTTTTGGATAGTT
1 TTTTTGAAAGTTTCGA-GGTCAAAAATGGAATTTTTGGA-AGTT
238919 TAGGGGCCTT
Statistics
Matches: 242, Mismatches: 21, Indels: 25
0.84 0.07 0.09
Matches are distributed among these distances:
114 18 0.07
115 18 0.07
116 44 0.18
117 151 0.62
118 11 0.05
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.37
Consensus pattern (114 bp):
TTTTTGAAAGTTTCGAGGTCAAAAATGGAATTTTTGGAAGTTGGGGGTAAAATATAATTTTTGGA
AGTTTTAAGGTAAAAATGAATTTTTGGAAGTTCGAGGGTAAAAATATAA
Found at i:240611 original size:41 final size:41
Alignment explanation
Indices: 240554--240632 Score: 158
Period size: 41 Copynumber: 1.9 Consensus size: 41
240544 TATTGGAAAC
240554 GTACTAAGTATTTCTTATACTTATTTTGGTTGATACTAAAT
1 GTACTAAGTATTTCTTATACTTATTTTGGTTGATACTAAAT
240595 GTACTAAGTATTTCTTATACTTATTTTGGTTGATACTA
1 GTACTAAGTATTTCTTATACTTATTTTGGTTGATACTA
240633 TCTCTGTAAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.28, C:0.10, G:0.13, T:0.49
Consensus pattern (41 bp):
GTACTAAGTATTTCTTATACTTATTTTGGTTGATACTAAAT
Found at i:264843 original size:50 final size:50
Alignment explanation
Indices: 264785--264941 Score: 217
Period size: 50 Copynumber: 3.1 Consensus size: 50
264775 ATTTTACCCT
* *
264785 TAAAGCTATGGAGGTGGAGATTGAAGCCGCAATGGTAAATCTCATACACG
1 TAAAGCTATGGAGGTGGAGATTGAAGCCGCAATGGAAAATCTCATACACC
*
264835 TAAAGCTATGGAGGTGTAGATTGAAGCCGCAATGGAAAATCTCATACACC
1 TAAAGCTATGGAGGTGGAGATTGAAGCCGCAATGGAAAATCTCATACACC
* * * * * *
264885 TAAAGCTGTAGAGG-GGCAAAATGAAGCCGCAATGGCAAATCTCATTCACC
1 TAAAGCTATGGAGGTGG-AGATTGAAGCCGCAATGGAAAATCTCATACACC
264935 TAAAGCT
1 TAAAGCT
264942 GTAGAGGGGC
Statistics
Matches: 96, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
49 1 0.01
50 95 0.99
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (50 bp):
TAAAGCTATGGAGGTGGAGATTGAAGCCGCAATGGAAAATCTCATACACC
Found at i:265150 original size:39 final size:40
Alignment explanation
Indices: 265018--265265 Score: 138
Period size: 39 Copynumber: 6.3 Consensus size: 40
265008 ACAACCTTGA
* * * * *
265018 ATCTTTTACCCCAAGCATGAGGCAGATTGAAGCTAT-CAG
1 ATCTCTTACCCCGACCATGAGGTAGATTGAAGCAATCCAG
* * * * *
265057 ATCT-TTTCCCCTAACCA-AAGGGCAGATTGAAGTAATCCAG
1 ATCTCTTACCCC-GACCATGA-GGTAGATTGAAGCAATCCAG
*
265097 ATCTCTTACCCCGACCATGAGGTAGATTGAAGCCAT-CAG
1 ATCTCTTACCCCGACCATGAGGTAGATTGAAGCAATCCAG
* * * *
265136 ATCT-TTGACTCCGACCATGGGGTAAATTGAAGCAATTCA-
1 ATCTCTT-ACCCCGACCATGAGGTAGATTGAAGCAATCCAG
* * ** * * * *
265175 ATCTTTTATCCTAACCA-GAGGGCAGATTAAAGACCATTC-G
1 ATCTCTTACCCCGACCATGA-GGTAGATTGAAG-CAATCCAG
* *
265215 ATCCCTTACCCCGACCAT-AGGGCAGATTGAAGCAATCCA-
1 ATCTCTTACCCCGACCATGA-GGTAGATTGAAGCAATCCAG
*
265254 ATCTTTTACCCC
1 ATCTCTTACCCC
265266 TAAAGCTATA
Statistics
Matches: 162, Mismatches: 34, Indels: 26
0.73 0.15 0.12
Matches are distributed among these distances:
38 10 0.06
39 87 0.54
40 58 0.36
41 7 0.04
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (40 bp):
ATCTCTTACCCCGACCATGAGGTAGATTGAAGCAATCCAG
Found at i:265165 original size:79 final size:79
Alignment explanation
Indices: 265018--265265 Score: 193
Period size: 79 Copynumber: 3.2 Consensus size: 79
265008 ACAACCTTGA
* * * * *
265018 ATCTTTTACCCCAAGCATGAGGCAGATTGAAGCTATCAGATCTTTTCCCCTAACCAAAGGGCAGA
1 ATCTCTTACCCCAACCATGAGGCAGATTGAAGCCATCAGATCTTTACCCCTAACCAAAGGGCAAA
265083 TTGAAGTAATCCAG
66 TTGAAGTAATCCAG
* * * * ** *
265097 ATCTCTTACCCCGACCATGAGGTAGATTGAAGCCATCAGATCTTTGACTCC-GACCATGGGGTAA
1 ATCTCTTACCCCAACCATGAGGCAGATTGAAGCCATCAGATCTTT-ACCCCTAACCAAAGGGCAA
* *
265161 ATTGAAGCAATTCA-
65 ATTGAAGTAATCCAG
* * * * * * *
265175 ATCTTTTATCCTAACCA-GAGGGCAGATTAAAGACCATTC-GATCCCTTACCCC-GACCATAGGG
1 ATCTCTTACCCCAACCATGA-GGCAGATTGAAG-CCA-TCAGAT-CTTTACCCCTAACCAAAGGG
* *
265237 CAGATTGAAGCAATCCA-
62 CAAATTGAAGTAATCCAG
*
265254 ATCTTTTACCCC
1 ATCTCTTACCCC
265266 TAAAGCTATA
Statistics
Matches: 136, Mismatches: 28, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
77 2 0.01
78 23 0.17
79 103 0.76
80 8 0.06
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (79 bp):
ATCTCTTACCCCAACCATGAGGCAGATTGAAGCCATCAGATCTTTACCCCTAACCAAAGGGCAAA
TTGAAGTAATCCAG
Found at i:265258 original size:118 final size:118
Alignment explanation
Indices: 265043--265259 Score: 273
Period size: 118 Copynumber: 1.8 Consensus size: 118
265033 CATGAGGCAG
* * * *
265043 ATTGAAGCTATCAGATCTTTTCCCCTAACCAAAGGGCAGATTGAAGTAATCCAGATCTCTTACCC
1 ATTGAAGCAATCAGATCTTTTACCCTAACCAAAGGGCAGATTAAAGTAATCCAGATCCCTTACCC
* *
265108 CGACCATGAGGTAGATTGAAGCCATCAGATCTTTGACTCCGACCATGGGGTAA
66 CGACCATGAGGCAGATTGAAGCAATCAGATCTTTGACTCCGACCATGGGGTAA
* * *
265161 ATTGAAGCAATTCA-ATCTTTTATCCTAACCAGAGGGCAGATTAAAG-ACCATTC-GATCCCTTA
1 ATTGAAGCAA-TCAGATCTTTTACCCTAACCAAAGGGCAGATTAAAGTA--ATCCAGATCCCTTA
265223 CCCCGACCAT-AGGGCAGATTGAAGCAATCCA-ATCTTT
63 CCCCGACCATGA-GGCAGATTGAAGCAAT-CAGATCTTT
265260 TACCCCTAAA
Statistics
Matches: 85, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
117 2 0.02
118 75 0.88
119 8 0.09
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (118 bp):
ATTGAAGCAATCAGATCTTTTACCCTAACCAAAGGGCAGATTAAAGTAATCCAGATCCCTTACCC
CGACCATGAGGCAGATTGAAGCAATCAGATCTTTGACTCCGACCATGGGGTAA
Found at i:268085 original size:33 final size:33
Alignment explanation
Indices: 268048--268171 Score: 133
Period size: 33 Copynumber: 3.8 Consensus size: 33
268038 TGTTGACTGC
* ** *
268048 TGGGGAGGGTTATGATGAAGTTGTAGAAGTTTA
1 TGGGGAGGGTGATGATGAAGGGGTAGAAGTTCA
*
268081 TGGGGATGGTGATGATGAAGGGGTAGAAGTTCA
1 TGGGGAGGGTGATGATGAAGGGGTAGAAGTTCA
* * * *
268114 CGGGGAGGATGATG-TAGGAGGGGTAGAAGTTGA
1 TGGGGAGGGTGATGAT-GAAGGGGTAGAAGTTCA
* *
268147 TAGGGAAGGTGATGATGAAGGGGTA
1 TGGGGAGGGTGATGATGAAGGGGTA
268172 TAATCTAATG
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
32 1 0.01
33 72 0.97
34 1 0.01
ACGTcount: A:0.28, C:0.02, G:0.46, T:0.24
Consensus pattern (33 bp):
TGGGGAGGGTGATGATGAAGGGGTAGAAGTTCA
Found at i:268267 original size:33 final size:32
Alignment explanation
Indices: 268070--268267 Score: 100
Period size: 33 Copynumber: 6.0 Consensus size: 32
268060 TGATGAAGTT
* * *
268070 GTAGAAGTTTATGGGGATGGTGAT-GATGAAGGG
1 GTAGAAGTTGAT-GGGAAGGTGATGGA-GGAGGG
* * * *
268103 GTAGAAGTTCACGGGGAGGATGATGTAGGAGGG
1 GTAGAAGTTGATGGGAAGG-TGATGGAGGAGGG
*
268136 GTAGAAGTTGATAGGGAAGGTGAT-GATGAAGGG
1 GTAGAAGTTGAT-GGGAAGGTGATGGA-GGAGGG
* * * *
268169 GTATAA-TCTAATGGTGAATGTGATTTGGA--AAGG
1 GTAGAAGT-TGATGG-GAAGGTGA--TGGAGGAGGG
* * * * *
268202 GTAAAAGTTGTTGAGGAAGATGATGTAAGAGGG
1 GTAGAAGTTGATG-GGAAGGTGATGGAGGAGGG
*
268235 GTAGAAGTTGATGTGGAGGGTGATGGAGGAGGG
1 GTAGAAGTTGATG-GGAAGGTGATGGAGGAGGG
268268 TCTACTGTTG
Statistics
Matches: 123, Mismatches: 29, Indels: 26
0.69 0.16 0.15
Matches are distributed among these distances:
31 3 0.02
32 9 0.07
33 99 0.80
34 9 0.07
35 1 0.01
36 2 0.02
ACGTcount: A:0.30, C:0.02, G:0.44, T:0.24
Consensus pattern (32 bp):
GTAGAAGTTGATGGGAAGGTGATGGAGGAGGG
Found at i:268358 original size:51 final size:51
Alignment explanation
Indices: 268303--268431 Score: 204
Period size: 51 Copynumber: 2.5 Consensus size: 51
268293 GTGAAGTTGC
*
268303 TGCTGATGAATATGCTACTAATTTTGCAACATCAGATGGAGAGAATAATGT
1 TGCTGATGAATATGCTGCTAATTTTGCAACATCAGATGGAGAGAATAATGT
* * *
268354 TGCTGATGAATATGATGCTAATTTTGCAACATCAGATGGAGTGGATAATGT
1 TGCTGATGAATATGCTGCTAATTTTGCAACATCAGATGGAGAGAATAATGT
* *
268405 TGTTGATGAATATGCTGCTGATTTTGC
1 TGCTGATGAATATGCTGCTAATTTTGC
268432 TGATGAAAAT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 71 1.00
ACGTcount: A:0.30, C:0.11, G:0.24, T:0.35
Consensus pattern (51 bp):
TGCTGATGAATATGCTGCTAATTTTGCAACATCAGATGGAGAGAATAATGT
Found at i:271225 original size:17 final size:16
Alignment explanation
Indices: 271191--271230 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 16
271181 TTTTTGGCTG
*
271191 GTATAGAGTGAATGGT
1 GTATAGGGTGAATGGT
271207 GTATAGGGTGAATTGGT
1 GTATAGGGTGAA-TGGT
271224 GTATAGG
1 GTATAGG
271231 CTAATCATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 11 0.50
17 11 0.50
ACGTcount: A:0.28, C:0.00, G:0.40, T:0.33
Consensus pattern (16 bp):
GTATAGGGTGAATGGT
Found at i:274098 original size:18 final size:17
Alignment explanation
Indices: 274060--274099 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
274050 ATTACTTTTT
274060 AAAAATTTTAAAAATCAA
1 AAAAATTTTAAAAAT-AA
274078 AAAATATTTTAAAAAGTAA
1 AAAA-ATTTTAAAAA-TAA
274097 AAA
1 AAA
274100 CCATTAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 4 0.20
19 15 0.75
20 1 0.05
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.28
Consensus pattern (17 bp):
AAAAATTTTAAAAATAA
Found at i:274123 original size:15 final size:15
Alignment explanation
Indices: 274103--274132 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
274093 GTAAAAACCA
*
274103 TTAAAATTATTTTTT
1 TTAAAAATATTTTTT
274118 TTAAAAATATTTTTT
1 TTAAAAATATTTTTT
274133 AATATTTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
TTAAAAATATTTTTT
Done.