Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014122.1 Kokia drynarioides strain JFW-HI SEQ_129155, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7470
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.32


Found at i:2089 original size:21 final size:21

Alignment explanation


    Indices: 2065--2111  Score: 60
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       2055 CTTCATTTCA

                          *       
       2065 TTCTCTTATTCTT-TTTCTTCC
          1 TTCTCTTATTCTTCCTTC-TCC

                   *             
       2086 TTCTCTTCTTCTTCCTTCTCC
          1 TTCTCTTATTCTTCCTTCTCC

                 
       2107 TTCTC
          1 TTCTC

       2112 CTGGTTATCT


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  21   20  0.87
  22    3  0.13

ACGTcount: A:0.02, C:0.36, G:0.00, T:0.62


Consensus pattern (21 bp):   
TTCTCTTATTCTTCCTTCTCC

Found at i:2097 original size:15 final size:15

Alignment explanation


    Indices: 2074--2110  Score: 56
    Period size: 15  Copynumber: 2.4  Consensus size: 15

       2064 ATTCTCTTAT

                *          
       2074 TCTTTTTCTTCCTTC
          1 TCTTCTTCTTCCTTC

                           
       2089 TCTTCTTCTTCCTTC
          1 TCTTCTTCTTCCTTC

                   
       2104 TCCTTCT
          1 T-CTTCT

       2111 CCTGGTTATC


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  15   15  0.75
  16    5  0.25

ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62


Consensus pattern (15 bp):   
TCTTCTTCTTCCTTC
Done.