genome.fa.s14129.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014129.1 Kokia drynarioides strain JFW-HI SEQ_129162, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  188230

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2034--2073	20	2.1	19	85	4	53	17	0	5	77	0.94
2048--2087	19	2.1	19	85	0	53	25	0	5	70	1.08
11530--11641	10	11.5	10	69	18	51	58	5	1	33	1.31
11687--11734	10	5.0	9	82	12	60	62	4	0	33	1.14
12765--12810	24	1.9	24	81	0	56	8	19	13	58	1.60
13468--13507	18	2.2	18	86	8	55	22	2	2	72	1.09
13892--13922	8	3.8	8	91	8	53	67	0	0	32	0.91
14582--14622	17	2.4	16	88	8	55	36	2	7	53	1.42
15313--15384	25	2.9	25	76	12	76	31	1	2	63	1.17
15402--15429	14	2.0	14	100	0	56	35	0	0	64	0.94
15976--16033	30	2.0	30	86	3	82	37	0	5	56	1.21
16892--17197	153	2.0	153	93	0	522	30	14	26	29	1.95
20990--21019	16	1.9	16	93	6	53	16	13	0	70	1.18
20985--21045	22	2.8	22	87	7	72	14	11	1	72	1.20
20999--21045	21	2.2	22	92	3	78	14	8	2	74	1.15
25454--25483	16	1.9	16	93	6	53	60	0	0	40	0.97
30651--30717	25	2.6	26	72	6	66	71	2	11	13	1.25
37930--37982	26	2.0	26	100	0	106	26	37	11	24	1.89
42586--42629	22	2.1	21	84	12	56	36	2	4	56	1.32
42632--42687	29	1.9	29	92	0	94	35	17	7	39	1.78
42949--43005	29	1.9	30	89	7	89	45	3	0	50	1.18
43285--43347	27	2.2	30	83	8	78	34	0	6	58	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44874--44914	6	6.8	6	100	0	82	34	51	14	0	1.43
49530--49592	3	21.0	3	100	0	126	33	0	0	66	0.92
56040--56103	22	2.9	22	75	9	58	48	26	3	21	1.65
56559--56601	21	2.0	21	81	0	50	48	25	2	23	1.62
73358--73526	90	1.9	90	85	3	234	44	15	9	30	1.78
73851--74070	93	2.4	92	83	4	266	30	10	16	43	1.81
79028--79077	20	2.5	21	81	15	61	70	4	6	20	1.25
79035--79073	19	2.1	18	85	9	51	69	2	7	20	1.26
80317--80377	20	2.8	22	75	14	63	1	37	4	55	1.31
80634--80660	2	13.5	2	100	0	54	0	48	0	51	1.00
81523--81902	200	1.9	202	84	7	522	28	10	20	40	1.85
85927--85957	12	2.6	12	100	0	62	19	0	61	19	1.35
90806--90857	18	2.9	18	80	5	52	51	11	0	36	1.38
93256--93308	26	2.0	26	100	0	106	39	3	18	37	1.69
97796--98242	195	2.3	194	80	6	479	26	25	19	28	1.98
101951--102044	48	1.9	48	89	2	143	38	19	28	13	1.90
101967--102105	23	6.0	23	81	9	140	38	23	26	12	1.90
101967--102092	48	2.7	45	84	10	157	38	23	26	11	1.88
102715--102744	10	2.9	10	95	5	51	20	10	3	66	1.35
105249--105296	18	2.6	19	80	12	55	70	0	6	22	1.09
106073--106164	40	2.3	39	81	7	105	41	1	6	51	1.35
107080--107124	23	2.0	23	82	4	56	44	15	6	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114313--114367	28	2.0	28	92	0	92	30	16	29	23	1.96
119602--119629	5	5.6	5	100	0	56	17	82	0	0	0.68
119909--119951	3	14.3	3	90	0	68	32	4	0	62	1.15
129371--129405	9	3.9	9	88	0	52	25	11	14	48	1.77
129371--129405	18	1.9	18	94	0	61	25	11	14	48	1.77
129918--129951	6	5.7	6	100	0	68	32	17	35	14	1.91
134793--134844	26	2.0	26	100	0	104	34	15	0	50	1.45
135666--135716	20	2.5	20	87	0	66	29	23	9	37	1.87
137260--137395	68	2.0	68	83	1	173	53	4	2	39	1.33
138846--138880	8	4.1	8	92	7	52	28	0	0	71	0.86
140243--140499	109	2.4	109	85	2	329	24	20	20	35	1.96
140330--140560	109	2.1	109	80	8	249	23	21	22	33	1.97
146140--146229	41	2.2	41	81	15	98	24	23	11	41	1.87
146219--146406	42	4.4	42	91	6	272	27	26	10	35	1.89
146219--146406	86	2.2	84	87	6	272	27	26	10	35	1.89
146178--146406	128	1.8	126	85	5	327	27	25	10	36	1.89
150323--150360	20	1.9	20	100	0	76	26	0	26	47	1.52
153567--153733	87	1.9	87	86	4	239	37	13	19	30	1.90
154126--154274	29	5.1	29	85	8	187	32	4	30	33	1.76
154380--154665	29	9.8	29	82	10	300	33	3	28	34	1.75
154380--154671	58	5.0	57	86	7	349	33	4	28	34	1.76
155761--155856	3	32.0	3	74	4	59	36	4	5	54	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155781--155856	9	8.1	9	81	8	71	40	2	3	52	1.34
156522--156589	6	12.0	6	77	16	74	51	2	1	44	1.25
156519--156598	11	7.3	11	75	8	65	53	3	1	41	1.27
156522--156589	17	4.0	17	84	7	93	51	2	1	44	1.25
156941--157815	205	4.3	206	88	1	1227	20	21	20	36	1.95
169380--169541	58	2.8	58	78	4	159	33	8	25	31	1.86
169529--169616	38	2.3	38	82	3	106	30	1	27	40	1.64
169567--169671	29	3.6	29	88	6	158	32	1	28	37	1.68
169497--169639	68	2.1	68	83	6	173	32	2	26	38	1.71
178537--178698	58	2.8	58	78	4	159	33	8	25	31	1.86
178686--178773	38	2.3	38	82	3	106	30	1	27	40	1.64
178724--178937	58	3.7	59	87	8	312	34	2	28	35	1.70
178724--178937	29	7.4	28	85	8	268	34	2	28	35	1.70
180069--180094	3	8.7	3	100	0	52	65	0	0	34	0.93
180093--180148	3	18.7	3	100	0	112	33	0	0	66	0.92
180850--180923	6	12.3	6	72	16	64	58	1	1	39	1.15
180850--180923	17	4.1	18	83	11	98	58	1	1	39	1.15
180850--180923	37	2.1	35	90	10	114	58	1	1	39	1.15
180927--180977	24	2.1	24	96	0	93	50	11	7	29	1.67
182959--183066	53	2.0	54	98	1	209	15	22	12	49	1.79
183379--183481	23	4.4	23	96	1	179	43	0	3	52	1.19
184472--184531	8	7.5	8	76	14	61	16	0	3	80	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184472--184532	7	7.9	7	77	18	59	18	0	3	78	0.88
184740--184773	16	2.2	16	89	5	52	26	0	0	73	0.83
185720--185747	14	2.0	14	100	0	56	28	7	21	42	1.79

Tables:   1

The End!